Wall clock time and date at job start Tue Mar 31 2020 20:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35992 * 117.00176 * 2 1 4 4 C 1.38122 * 120.00164 * 0.02562 * 3 2 1 5 5 C 1.39794 * 119.84781 * 179.97438 * 4 3 2 6 6 C 1.47501 * 120.07715 * 179.97438 * 5 4 3 7 7 O 1.21616 * 120.00135 * 52.24467 * 6 5 4 8 8 N 1.34777 * 119.99745 * 232.25488 * 6 5 4 9 9 C 1.36896 * 119.99997 * 174.20361 * 8 6 5 10 10 H 1.08003 * 120.00143 * 348.63595 * 9 8 6 11 11 C 1.39027 * 120.00423 * 168.63903 * 9 8 6 12 12 N 1.31385 * 119.99812 * 0.59565 * 11 9 8 13 13 Si 1.86804 * 120.00154 * 180.59518 * 11 9 8 14 14 H 1.48504 * 109.46862 * 90.00344 * 13 11 9 15 15 H 1.48496 * 109.46966 * 209.99938 * 13 11 9 16 16 H 1.48493 * 109.46983 * 329.99960 * 13 11 9 17 17 C 1.46504 * 119.99968 * 354.18972 * 8 6 5 18 18 C 1.50700 * 109.47251 * 263.05928 * 17 8 6 19 19 O 1.20824 * 120.00162 * 0.02562 * 18 17 8 20 20 O 1.34230 * 119.99802 * 179.97438 * 18 17 8 21 21 C 1.39767 * 119.84680 * 0.02562 * 5 4 3 22 22 C 1.37772 * 119.99399 * 359.72652 * 21 5 4 23 23 C 1.38851 * 120.15821 * 0.54633 * 22 21 5 24 24 O 1.35793 * 119.92339 * 179.72356 * 23 22 21 25 25 C 1.42902 * 117.00460 * 2.57395 * 24 23 22 26 26 C 1.52996 * 109.47355 * 204.09762 * 25 24 23 27 27 C 1.52994 * 109.47347 * 84.09175 * 25 24 23 28 28 H 1.09000 * 109.46840 * 300.00424 * 1 2 3 29 29 H 1.09002 * 109.46765 * 59.99839 * 1 2 3 30 30 H 1.08991 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.07784 * 359.96019 * 4 3 2 32 32 H 0.96998 * 119.99642 * 179.97438 * 12 11 9 33 33 H 1.08991 * 109.46920 * 23.06604 * 17 8 6 34 34 H 1.09004 * 109.46404 * 143.06574 * 17 8 6 35 35 H 0.96701 * 117.00016 * 179.97438 * 20 18 17 36 36 H 1.08000 * 120.00229 * 179.97438 * 21 5 4 37 37 H 1.08002 * 119.92036 * 180.27070 * 22 21 5 38 38 H 1.09002 * 109.46778 * 324.09237 * 25 24 23 39 39 H 1.09004 * 109.47243 * 299.99671 * 26 25 24 40 40 H 1.08997 * 109.47193 * 179.97438 * 26 25 24 41 41 H 1.09002 * 109.47145 * 59.99593 * 26 25 24 42 42 H 1.08996 * 109.47336 * 300.00228 * 27 25 24 43 43 H 1.09004 * 109.46738 * 60.00642 * 27 25 24 44 44 H 1.09007 * 109.47276 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2943 2.3701 0.0005 5 6 1.9323 3.6140 0.0011 6 6 1.1340 4.8543 0.0011 7 8 0.2623 5.0164 0.8335 8 7 1.3705 5.8078 -0.9216 9 6 0.5544 6.9043 -0.9974 10 1 -0.3773 6.9229 -0.4514 11 6 0.9248 7.9940 -1.7772 12 7 2.0525 7.9668 -2.4508 13 14 -0.1809 9.4970 -1.8674 14 1 0.1947 10.4528 -0.7947 15 1 -0.0207 10.1506 -3.1911 16 1 -1.5954 9.0823 -1.6880 17 6 2.5010 5.6710 -1.8432 18 6 3.6760 6.4542 -1.3168 19 8 3.5791 7.0637 -0.2780 20 8 4.8304 6.4738 -2.0013 21 6 3.3284 3.6796 0.0005 22 6 4.0724 2.5200 0.0052 23 6 3.4387 1.2846 -0.0011 24 8 4.1768 0.1447 -0.0022 25 6 5.5969 0.2911 0.0605 26 6 6.2644 -0.9496 -0.5359 27 6 6.0292 0.4514 1.5193 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2156 2.3151 0.0003 32 1 2.3107 8.7269 -2.9951 33 1 2.7744 4.6194 -1.9292 34 1 2.2188 6.0545 -2.8238 35 1 5.5557 6.9903 -1.6242 36 1 3.8240 4.6392 0.0005 37 1 5.1512 2.5721 0.0092 38 1 5.8966 1.1727 -0.5062 39 1 5.9647 -1.8313 0.0307 40 1 7.3476 -0.8377 -0.4885 41 1 5.9564 -1.0637 -1.5753 42 1 5.5537 1.3353 1.9442 43 1 5.7296 -0.4303 2.0860 44 1 7.1124 0.5635 1.5671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737844615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:06 Heat of formation + Delta-G solvation = -148.489286 kcal Electronic energy + Delta-G solvation = -30525.173844 eV Core-core repulsion = 26216.843807 eV Total energy + Delta-G solvation = -4308.330037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.62327 -39.50901 -38.68272 -38.18986 -36.33511 -35.27724 -34.47937 -33.25987 -31.81495 -30.24161 -29.64871 -27.80088 -27.45211 -27.08655 -25.12515 -23.33224 -22.45426 -21.13769 -20.80450 -19.64376 -18.37928 -17.48082 -17.13718 -16.89898 -16.34646 -15.88648 -15.76002 -15.52044 -15.22639 -15.03470 -14.72779 -14.57114 -14.26236 -14.11841 -13.59007 -13.48685 -13.12957 -13.02578 -12.71167 -12.43687 -12.28412 -12.19915 -12.00279 -11.83514 -11.74080 -11.47831 -11.33740 -11.19482 -11.05186 -10.94767 -10.76050 -10.57036 -10.46238 -10.37108 -10.26422 -9.64840 -9.13357 -8.75511 -8.49947 -8.08654 -7.57675 -6.46478 -4.00740 1.37155 1.55815 3.08902 3.19111 3.20353 3.24478 3.37377 3.41956 3.62923 3.94655 4.01066 4.25279 4.62961 4.67486 4.77029 4.87261 5.02766 5.09667 5.12775 5.17835 5.29013 5.36423 5.39537 5.48114 5.50663 5.56522 5.59531 5.64888 5.66518 5.87770 5.92570 5.96940 6.02327 6.26001 6.41618 6.53730 6.74355 6.77419 6.83979 7.18058 7.42008 7.53822 7.70660 7.85034 8.27593 8.97027 9.06703 9.20574 9.71291 10.53582 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.003834 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.246974 B = 7300.518270 C = 8634.218488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.091 3.909 4 C -0.131 4.131 5 C -0.092 4.092 6 C 0.491 3.509 7 O -0.572 6.572 8 N -0.422 5.422 9 C -0.282 4.282 10 H 0.111 0.889 11 C 0.028 3.972 12 N -0.899 5.899 13 Si 0.943 3.057 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.268 1.268 17 C 0.138 3.862 18 C 0.499 3.501 19 O -0.520 6.520 20 O -0.532 6.532 21 C -0.092 4.092 22 C -0.178 4.178 23 C 0.107 3.893 24 O -0.299 6.299 25 C 0.072 3.928 26 C -0.146 4.146 27 C -0.180 4.180 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.140 0.860 32 H 0.273 0.727 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.389 0.611 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.856 -14.139 -0.820 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.046 3.954 4 C -0.150 4.150 5 C -0.095 4.095 6 C 0.280 3.720 7 O -0.457 6.457 8 N -0.140 5.140 9 C -0.409 4.409 10 H 0.128 0.872 11 C -0.171 4.171 12 N -0.543 5.543 13 Si 0.770 3.230 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.193 1.193 17 C 0.012 3.988 18 C 0.341 3.659 19 O -0.407 6.407 20 O -0.343 6.343 21 C -0.112 4.112 22 C -0.196 4.196 23 C 0.062 3.938 24 O -0.214 6.214 25 C 0.016 3.984 26 C -0.203 4.203 27 C -0.237 4.237 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.158 0.842 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.245 0.755 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.132 -14.351 -0.430 16.031 hybrid contribution 0.197 1.728 0.175 1.748 sum 7.330 -12.623 -0.255 14.599 Atomic orbital electron populations 1.23061 0.78712 1.03549 1.01708 1.86122 1.20896 1.25769 1.89459 1.18012 0.88912 0.84972 1.03513 1.21054 1.00247 0.90007 1.03726 1.19909 0.93540 0.94132 1.01957 1.17785 0.86674 0.84380 0.83123 1.90641 1.36229 1.80605 1.38182 1.43351 1.23682 1.19034 1.27964 1.19884 1.01816 0.92418 1.26774 0.87180 1.25278 0.96862 0.99071 0.95937 1.69520 1.22163 1.31944 1.30674 0.85638 0.79569 0.80258 0.77536 1.20254 1.20751 1.19290 1.21136 0.83372 0.96436 0.97821 1.23585 0.81801 0.79566 0.80952 1.90617 1.82092 1.42547 1.25434 1.84537 1.23692 1.69785 1.56250 1.21153 0.92761 0.98229 0.99011 1.20943 1.00242 0.90774 1.07687 1.18231 0.88010 0.85904 1.01683 1.86155 1.18281 1.28403 1.88516 1.22449 0.79123 0.99910 0.96916 1.21821 0.99859 0.96971 1.01667 1.22365 1.01787 1.03314 0.96260 0.92537 0.92582 0.88470 0.84185 0.91565 0.90728 0.83592 0.75505 0.85572 0.84487 0.90696 0.91578 0.90699 0.91633 0.91703 0.91529 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.73 10.28 -34.38 -0.35 -5.08 16 3 C 0.09 1.52 6.69 -39.19 -0.26 1.26 16 4 C -0.13 -2.37 8.73 -39.04 -0.34 -2.71 16 5 C -0.09 -1.89 4.84 -104.97 -0.51 -2.40 16 6 C 0.49 12.35 7.13 -12.49 -0.09 12.26 16 7 O -0.57 -16.16 16.69 5.26 0.09 -16.07 16 8 N -0.42 -10.79 2.18 -117.29 -0.26 -11.04 16 9 C -0.28 -7.71 9.28 -15.00 -0.14 -7.85 16 10 H 0.11 3.12 7.25 -52.48 -0.38 2.74 16 11 C 0.03 0.72 5.29 -17.45 -0.09 0.63 16 12 N -0.90 -22.79 7.87 55.50 0.44 -22.36 16 13 Si 0.94 20.74 29.55 -169.99 -5.02 15.71 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 C 0.14 3.10 4.82 -5.19 -0.03 3.08 16 18 C 0.50 11.20 4.01 36.01 0.14 11.34 16 19 O -0.52 -13.59 16.47 -18.75 -0.31 -13.90 16 20 O -0.53 -9.67 13.42 -39.26 -0.53 -10.20 16 21 C -0.09 -1.71 7.56 -39.18 -0.30 -2.00 16 22 C -0.18 -2.74 8.35 -39.53 -0.33 -3.07 16 23 C 0.11 1.71 6.59 -38.92 -0.26 1.45 16 24 O -0.30 -4.30 9.57 -33.75 -0.32 -4.63 16 25 C 0.07 0.76 2.86 -26.74 -0.08 0.69 16 26 C -0.15 -1.21 9.56 37.16 0.36 -0.85 16 27 C -0.18 -1.72 9.27 37.15 0.34 -1.37 16 28 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 29 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.14 2.40 6.28 -52.48 -0.33 2.07 16 32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.07 1.47 5.43 -51.93 -0.28 1.19 16 34 H 0.15 3.41 6.14 -51.93 -0.32 3.09 16 35 H 0.39 5.42 9.10 45.56 0.41 5.83 16 36 H 0.13 2.47 5.09 -52.49 -0.27 2.20 16 37 H 0.14 1.71 5.66 -52.49 -0.30 1.42 16 38 H 0.08 0.75 5.95 -51.93 -0.31 0.44 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.70 7.38 -51.93 -0.38 0.32 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -34.13 362.91 -6.00 -40.12 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -4.62 Total: 10.24 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -0.58 Total: 11.73 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.18 Total: -33.40 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -1.42 Total: -49.88 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.13 -6.00 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737844615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.365 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds