Wall clock time and date at job start Tue Mar 31 2020 20:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35992 * 117.00176 * 2 1 4 4 C 1.38122 * 120.00164 * 0.02562 * 3 2 1 5 5 C 1.39794 * 119.84781 * 179.97438 * 4 3 2 6 6 C 1.47501 * 120.07715 * 179.97438 * 5 4 3 7 7 O 1.21616 * 120.00135 * 52.24467 * 6 5 4 8 8 N 1.34777 * 119.99745 * 232.25488 * 6 5 4 9 9 C 1.36896 * 119.99997 * 174.20361 * 8 6 5 10 10 H 1.08003 * 120.00143 * 348.63595 * 9 8 6 11 11 C 1.39027 * 120.00423 * 168.63903 * 9 8 6 12 12 N 1.31385 * 119.99812 * 0.59565 * 11 9 8 13 13 Si 1.86804 * 120.00154 * 180.59518 * 11 9 8 14 14 H 1.48504 * 109.46862 * 90.00344 * 13 11 9 15 15 H 1.48496 * 109.46966 * 209.99938 * 13 11 9 16 16 H 1.48493 * 109.46983 * 329.99960 * 13 11 9 17 17 C 1.46504 * 119.99968 * 354.18972 * 8 6 5 18 18 C 1.50700 * 109.47251 * 263.05928 * 17 8 6 19 19 O 1.20824 * 120.00162 * 0.02562 * 18 17 8 20 20 O 1.34230 * 119.99802 * 179.97438 * 18 17 8 21 21 C 1.39767 * 119.84680 * 0.02562 * 5 4 3 22 22 C 1.37772 * 119.99399 * 359.72652 * 21 5 4 23 23 C 1.38851 * 120.15821 * 0.54633 * 22 21 5 24 24 O 1.35793 * 119.92339 * 179.72356 * 23 22 21 25 25 C 1.42902 * 117.00460 * 2.57395 * 24 23 22 26 26 C 1.52996 * 109.47355 * 204.09762 * 25 24 23 27 27 C 1.52994 * 109.47347 * 84.09175 * 25 24 23 28 28 H 1.09000 * 109.46840 * 300.00424 * 1 2 3 29 29 H 1.09002 * 109.46765 * 59.99839 * 1 2 3 30 30 H 1.08991 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.07784 * 359.96019 * 4 3 2 32 32 H 0.96998 * 119.99642 * 179.97438 * 12 11 9 33 33 H 1.08991 * 109.46920 * 23.06604 * 17 8 6 34 34 H 1.09004 * 109.46404 * 143.06574 * 17 8 6 35 35 H 0.96701 * 117.00016 * 179.97438 * 20 18 17 36 36 H 1.08000 * 120.00229 * 179.97438 * 21 5 4 37 37 H 1.08002 * 119.92036 * 180.27070 * 22 21 5 38 38 H 1.09002 * 109.46778 * 324.09237 * 25 24 23 39 39 H 1.09004 * 109.47243 * 299.99671 * 26 25 24 40 40 H 1.08997 * 109.47193 * 179.97438 * 26 25 24 41 41 H 1.09002 * 109.47145 * 59.99593 * 26 25 24 42 42 H 1.08996 * 109.47336 * 300.00228 * 27 25 24 43 43 H 1.09004 * 109.46738 * 60.00642 * 27 25 24 44 44 H 1.09007 * 109.47276 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2943 2.3701 0.0005 5 6 1.9323 3.6140 0.0011 6 6 1.1340 4.8543 0.0011 7 8 0.2623 5.0164 0.8335 8 7 1.3705 5.8078 -0.9216 9 6 0.5544 6.9043 -0.9974 10 1 -0.3773 6.9229 -0.4514 11 6 0.9248 7.9940 -1.7772 12 7 2.0525 7.9668 -2.4508 13 14 -0.1809 9.4970 -1.8674 14 1 0.1947 10.4528 -0.7947 15 1 -0.0207 10.1506 -3.1911 16 1 -1.5954 9.0823 -1.6880 17 6 2.5010 5.6710 -1.8432 18 6 3.6760 6.4542 -1.3168 19 8 3.5791 7.0637 -0.2780 20 8 4.8304 6.4738 -2.0013 21 6 3.3284 3.6796 0.0005 22 6 4.0724 2.5200 0.0052 23 6 3.4387 1.2846 -0.0011 24 8 4.1768 0.1447 -0.0022 25 6 5.5969 0.2911 0.0605 26 6 6.2644 -0.9496 -0.5359 27 6 6.0292 0.4514 1.5193 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2156 2.3151 0.0003 32 1 2.3107 8.7269 -2.9951 33 1 2.7744 4.6194 -1.9292 34 1 2.2188 6.0545 -2.8238 35 1 5.5557 6.9903 -1.6242 36 1 3.8240 4.6392 0.0005 37 1 5.1512 2.5721 0.0092 38 1 5.8966 1.1727 -0.5062 39 1 5.9647 -1.8313 0.0307 40 1 7.3476 -0.8377 -0.4885 41 1 5.9564 -1.0637 -1.5753 42 1 5.5537 1.3353 1.9442 43 1 5.7296 -0.4303 2.0860 44 1 7.1124 0.5635 1.5671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737844615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:06 Heat of formation + Delta-G solvation = -171.181257 kcal Electronic energy + Delta-G solvation = -30526.157841 eV Core-core repulsion = 26216.843807 eV Total energy + Delta-G solvation = -4309.314035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.99154 -41.15234 -40.06326 -39.68322 -37.71730 -37.08881 -36.34401 -34.20086 -33.70517 -31.59450 -31.00483 -29.56001 -28.33202 -28.08673 -26.92271 -24.63505 -23.79602 -22.83887 -21.99140 -21.14443 -19.63083 -19.14960 -18.83418 -18.61779 -17.61033 -17.54455 -17.17527 -16.94291 -16.71432 -16.37669 -16.12277 -15.96602 -15.66557 -15.61450 -15.23352 -14.88781 -14.42084 -14.19823 -13.79278 -13.77514 -13.65502 -13.44895 -13.23744 -13.21135 -13.03710 -12.81949 -12.73793 -12.55311 -12.47000 -12.35565 -12.16863 -12.12723 -11.98742 -11.74962 -11.56191 -11.48090 -11.03692 -10.67053 -10.05785 -9.84805 -8.88666 -8.42035 -6.05026 -0.03686 0.20783 1.31321 1.39158 1.50922 1.66054 1.88464 2.11891 2.17146 2.28336 2.48558 2.55715 2.90238 3.16856 3.67090 3.70467 3.80195 3.92419 4.04987 4.11856 4.16428 4.22427 4.27165 4.38267 4.42283 4.54282 4.71174 4.75128 4.81777 4.83820 4.88486 4.91620 4.96209 5.01283 5.06236 5.27507 5.32496 5.34898 5.35730 5.44578 5.89665 5.96030 6.07339 6.31182 6.53794 6.98977 7.20399 7.44897 7.78190 8.55011 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.003834 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.246974 B = 7300.518270 C = 8634.218488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.316 6.316 3 C 0.091 3.909 4 C -0.132 4.132 5 C -0.119 4.119 6 C 0.482 3.518 7 O -0.621 6.621 8 N -0.431 5.431 9 C -0.324 4.324 10 H 0.085 0.915 11 C 0.001 3.999 12 N -0.901 5.901 13 Si 1.000 3.000 14 H -0.284 1.284 15 H -0.262 1.262 16 H -0.267 1.267 17 C 0.139 3.861 18 C 0.510 3.490 19 O -0.562 6.562 20 O -0.515 6.515 21 C -0.095 4.095 22 C -0.163 4.163 23 C 0.119 3.881 24 O -0.308 6.308 25 C 0.059 3.941 26 C -0.143 4.143 27 C -0.178 4.178 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.130 0.870 31 H 0.141 0.859 32 H 0.278 0.722 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.412 0.588 36 H 0.114 0.886 37 H 0.171 0.829 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.093 -15.527 -1.870 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.230 6.230 3 C 0.045 3.955 4 C -0.152 4.152 5 C -0.122 4.122 6 C 0.272 3.728 7 O -0.509 6.509 8 N -0.148 5.148 9 C -0.451 4.451 10 H 0.102 0.898 11 C -0.198 4.198 12 N -0.543 5.543 13 Si 0.824 3.176 14 H -0.211 1.211 15 H -0.186 1.186 16 H -0.191 1.191 17 C 0.014 3.986 18 C 0.354 3.646 19 O -0.453 6.453 20 O -0.327 6.327 21 C -0.114 4.114 22 C -0.181 4.181 23 C 0.072 3.928 24 O -0.222 6.222 25 C 0.004 3.996 26 C -0.199 4.199 27 C -0.236 4.236 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.155 0.845 35 H 0.271 0.729 36 H 0.132 0.868 37 H 0.188 0.812 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.433 -15.763 -1.534 18.434 hybrid contribution -0.357 2.004 0.483 2.092 sum 9.075 -13.760 -1.051 16.517 Atomic orbital electron populations 1.23358 0.76796 1.05773 1.01850 1.86122 1.22873 1.24852 1.89133 1.18081 0.89550 0.84946 1.02924 1.21002 1.00489 0.89766 1.03961 1.19593 0.94145 0.92752 1.05748 1.18516 0.86405 0.85586 0.82246 1.90575 1.38452 1.81849 1.40001 1.43485 1.24252 1.18730 1.28363 1.19827 1.02211 0.94478 1.28600 0.89751 1.25998 0.98168 1.00720 0.94908 1.69599 1.22407 1.32391 1.29942 0.84821 0.78053 0.76812 0.77958 1.21070 1.18596 1.19127 1.21155 0.82807 0.98070 0.96533 1.23408 0.82585 0.78434 0.80196 1.90607 1.83098 1.44304 1.27241 1.84453 1.23197 1.69847 1.55180 1.21027 0.91823 0.98814 0.99783 1.21137 1.01594 0.89381 1.06034 1.18344 0.88039 0.86612 0.99768 1.86179 1.20458 1.27684 1.87887 1.22879 0.77037 1.01663 0.98015 1.21855 1.01216 0.95683 1.01195 1.22372 1.03412 1.02499 0.95271 0.92688 0.92203 0.85210 0.84180 0.91130 0.88124 0.84513 0.72867 0.86797 0.81181 0.89648 0.91737 0.88030 0.91874 0.93165 0.91771 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.32 -9.26 10.28 -79.44 -0.82 -10.08 16 3 C 0.09 2.96 6.69 22.53 0.15 3.11 16 4 C -0.13 -4.88 8.73 22.62 0.20 -4.68 16 5 C -0.12 -5.03 4.84 -20.09 -0.10 -5.12 16 6 C 0.48 25.47 7.13 86.69 0.62 26.08 16 7 O -0.62 -37.38 16.69 -4.08 -0.07 -37.44 16 8 N -0.43 -22.94 2.18 -643.24 -1.40 -24.35 16 9 C -0.32 -18.53 9.28 84.09 0.78 -17.75 16 10 H 0.08 5.12 7.25 -2.91 -0.02 5.10 16 11 C 0.00 0.05 5.29 84.95 0.45 0.50 16 12 N -0.90 -45.56 7.87 21.68 0.17 -45.39 16 13 Si 1.00 42.83 29.55 68.60 2.03 44.86 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 15 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 C 0.14 6.32 4.82 85.63 0.41 6.74 16 18 C 0.51 22.73 4.01 71.24 0.29 23.02 16 19 O -0.56 -29.73 16.47 21.97 0.36 -29.36 16 20 O -0.51 -17.69 13.42 -51.42 -0.69 -18.38 16 21 C -0.10 -3.49 7.56 22.53 0.17 -3.32 16 22 C -0.16 -4.70 8.35 22.31 0.19 -4.52 16 23 C 0.12 3.56 6.59 22.70 0.15 3.71 16 24 O -0.31 -8.08 9.57 -77.21 -0.74 -8.82 16 25 C 0.06 1.06 2.86 30.59 0.09 1.15 16 26 C -0.14 -1.86 9.56 71.98 0.69 -1.17 16 27 C -0.18 -2.85 9.27 71.98 0.67 -2.19 16 28 H 0.05 1.22 7.66 -2.39 -0.02 1.20 16 29 H 0.06 1.26 7.66 -2.39 -0.02 1.24 16 30 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.14 5.00 6.28 -2.91 -0.02 4.98 16 32 H 0.28 13.27 8.31 -92.71 -0.77 12.50 16 33 H 0.10 3.98 5.43 -2.39 -0.01 3.96 16 34 H 0.14 6.44 6.14 -2.38 -0.01 6.43 16 35 H 0.41 10.43 9.10 -74.06 -0.67 9.75 16 36 H 0.11 4.46 5.09 -2.91 -0.01 4.44 16 37 H 0.17 3.68 5.66 -2.91 -0.02 3.66 16 38 H 0.09 1.36 5.95 -2.39 -0.01 1.35 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.05 0.96 7.38 -2.39 -0.02 0.94 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -76.97 362.91 5.10 -71.87 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.39 Total: 30.06 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: 5.86 Total: 27.03 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -1.23 Total: -69.74 kcal Atomic # 8 Polarization: -102.13 SS G_CDS: -1.95 Total: -104.08 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -76.97 5.10 -71.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737844615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.309 kcal (2) G-P(sol) polarization free energy of solvation -76.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds