Wall clock time and date at job start Tue Mar 31 2020 20:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00363 * 2 1 4 4 C 1.52995 * 109.47009 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47504 * 60.00286 * 4 3 2 6 6 O 1.42899 * 109.47191 * 299.99704 * 4 3 2 7 7 C 1.50709 * 109.46989 * 179.97438 * 4 3 2 8 8 O 1.20821 * 119.99621 * 335.00435 * 7 4 3 9 9 O 1.34230 * 119.99634 * 154.99571 * 7 4 3 10 10 C 1.45207 * 116.99247 * 180.02562 * 9 7 4 11 11 C 1.50701 * 109.46662 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00208 * 359.72502 * 11 10 9 13 13 N 1.34771 * 120.00034 * 179.97438 * 11 10 9 14 14 C 1.39242 * 120.00283 * 175.70147 * 13 11 10 15 15 C 1.39478 * 119.83626 * 214.99647 * 14 13 11 16 16 C 1.36371 * 120.16900 * 179.76076 * 15 14 13 17 17 C 1.40871 * 119.82814 * 0.51466 * 16 15 14 18 18 C 1.41151 * 120.16332 * 179.71947 * 17 16 15 19 19 H 1.08008 * 119.99993 * 214.80476 * 18 17 16 20 20 C 1.39908 * 120.00071 * 34.80442 * 18 17 16 21 21 N 1.30860 * 120.00207 * 355.55453 * 20 18 17 22 22 Si 1.86802 * 119.99797 * 175.55254 * 20 18 17 23 23 H 1.48502 * 109.47125 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46723 * 119.99806 * 22 20 18 25 25 H 1.48497 * 109.47173 * 239.99773 * 22 20 18 26 26 C 1.40861 * 119.67150 * 359.73935 * 17 16 15 27 27 C 1.36375 * 119.83011 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47801 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47162 * 300.00341 * 1 2 3 30 30 H 1.08998 * 109.47080 * 59.99555 * 1 2 3 31 31 H 1.08999 * 109.46943 * 60.00144 * 3 2 1 32 32 H 1.08997 * 109.46803 * 300.00227 * 3 2 1 33 33 H 1.09001 * 109.47675 * 179.97438 * 5 4 3 34 34 H 1.09009 * 109.47254 * 300.00074 * 5 4 3 35 35 H 1.09002 * 109.47606 * 59.99425 * 5 4 3 36 36 H 0.96700 * 114.00187 * 300.00403 * 6 4 3 37 37 H 1.09000 * 109.47262 * 60.00533 * 10 9 7 38 38 H 1.08998 * 109.47264 * 300.00254 * 10 9 7 39 39 H 0.97002 * 120.00323 * 355.71108 * 13 11 10 40 40 H 1.08002 * 119.91712 * 0.02562 * 15 14 13 41 41 H 1.08005 * 120.08599 * 180.25484 * 16 15 14 42 42 H 0.97000 * 120.00407 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.08717 * 179.97438 * 26 17 16 44 44 H 1.08003 * 119.91537 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9864 0.4255 -1.2501 6 8 3.9575 0.4752 1.1658 7 6 4.1485 2.5613 -0.0013 8 8 3.5277 3.4987 -0.4434 9 8 5.3842 2.7458 0.4895 10 6 5.9108 4.0987 0.4573 11 6 7.2986 4.1115 1.0446 12 8 7.7930 3.0828 1.4550 13 7 7.9884 5.2669 1.1185 14 6 9.2332 5.2960 1.7417 15 6 9.6212 6.4240 2.4645 16 6 10.8369 6.4579 3.0816 17 6 11.7059 5.3540 2.9786 18 6 12.9682 5.3839 3.6096 19 1 13.8154 4.9004 3.1457 20 6 13.1220 6.0396 4.8358 21 7 12.1183 6.6991 5.3556 22 14 14.7602 5.9739 5.7311 23 1 15.7256 5.1707 4.9385 24 1 15.2864 7.3520 5.9022 25 1 14.5710 5.3473 7.0641 26 6 11.3092 4.2205 2.2425 27 6 10.0885 4.1994 1.6348 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 5.0730 0.3398 -1.2509 34 1 3.5430 -0.5703 -1.2502 35 1 3.6645 0.9666 -2.1400 36 1 3.7053 0.8998 1.9972 37 1 5.2635 4.7546 1.0394 38 1 5.9499 4.4489 -0.5742 39 1 7.6177 6.0784 0.7377 40 1 8.9555 7.2712 2.5392 41 1 11.1342 7.3304 3.6444 42 1 12.2250 7.1541 6.2056 43 1 11.9704 3.3706 2.1588 44 1 9.7831 3.3311 1.0697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745318017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:35 Heat of formation + Delta-G solvation = -182.731202 kcal Electronic energy + Delta-G solvation = -28175.762465 eV Core-core repulsion = 23865.947587 eV Total energy + Delta-G solvation = -4309.814878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24129 -39.74198 -38.76083 -37.41814 -36.89357 -36.61556 -34.50395 -33.01362 -32.20283 -29.94239 -29.53960 -28.29921 -27.91997 -26.32381 -24.98463 -23.85905 -21.74323 -20.92783 -20.70619 -19.83373 -18.98838 -17.68330 -17.36582 -17.13877 -16.79574 -16.74596 -16.35108 -16.23719 -15.91507 -15.21019 -15.03068 -14.55846 -14.28961 -14.05744 -13.93467 -13.38987 -13.16488 -12.87120 -12.80342 -12.70039 -12.68092 -12.39880 -12.16292 -12.13639 -11.88443 -11.75363 -11.42061 -11.21338 -11.09227 -11.06912 -10.93841 -10.76565 -10.41850 -10.15916 -10.05192 -9.53494 -9.50896 -9.19768 -8.94775 -7.59206 -6.92666 -6.65384 -4.38037 1.65328 1.86427 2.44050 2.92956 3.05364 3.08689 3.13898 3.17585 3.30588 3.60892 3.76460 3.96035 4.09416 4.29155 4.41023 4.65623 4.75725 4.83036 4.87769 4.90105 4.92796 4.97281 5.04921 5.23512 5.35301 5.41834 5.61169 5.80135 5.96179 6.14447 6.39544 6.55520 6.66574 6.84586 7.01921 7.03382 7.14587 7.24755 7.34680 7.59677 7.66748 7.80487 8.02351 8.16412 8.27306 8.54761 8.63879 8.89352 8.95069 10.25713 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.001837 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.263716 B =15239.178299 C =15501.881028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.156 3.844 5 C -0.139 4.139 6 O -0.522 6.522 7 C 0.441 3.559 8 O -0.504 6.504 9 O -0.311 6.311 10 C 0.047 3.953 11 C 0.498 3.502 12 O -0.504 6.504 13 N -0.645 5.645 14 C 0.000 4.000 15 C -0.118 4.118 16 C -0.142 4.142 17 C 0.101 3.899 18 C -0.459 4.459 19 H 0.077 0.923 20 C 0.069 3.931 21 N -0.811 5.811 22 Si 0.916 3.084 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.205 4.205 27 C -0.084 4.084 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.384 0.616 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.397 0.603 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.278 0.722 43 H 0.097 0.903 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.265 -5.460 -9.858 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.030 4.030 4 C 0.113 3.887 5 C -0.196 4.196 6 O -0.327 6.327 7 C 0.282 3.718 8 O -0.392 6.392 9 O -0.225 6.225 10 C -0.030 4.030 11 C 0.282 3.718 12 O -0.379 6.379 13 N -0.290 5.290 14 C -0.092 4.092 15 C -0.138 4.138 16 C -0.162 4.162 17 C 0.098 3.902 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.146 4.146 21 N -0.438 5.438 22 Si 0.741 3.259 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.225 4.225 27 C -0.104 4.104 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.232 0.768 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.231 0.769 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.779 -6.359 -9.910 23.018 hybrid contribution -0.146 1.374 0.788 1.590 sum -19.925 -4.985 -9.122 22.473 Atomic orbital electron populations 1.22809 0.80361 1.03168 1.00233 1.87906 1.19962 1.26007 1.95475 1.22927 0.91593 0.85892 1.02623 1.20956 0.91443 0.85274 0.91058 1.21764 1.03602 1.01771 0.92498 1.86717 1.80621 1.50564 1.14808 1.24645 0.80291 0.92257 0.74608 1.90688 1.62251 1.43318 1.42932 1.86657 1.30606 1.31545 1.73651 1.22829 0.94539 0.82186 1.03482 1.19881 0.86019 0.84967 0.80920 1.90763 1.69122 1.31821 1.46169 1.42776 1.18798 1.10281 1.57124 1.17218 0.85578 0.99204 1.07198 1.20303 0.98064 0.96342 0.99100 1.21195 0.93970 0.99855 1.01135 1.17755 0.93375 0.89641 0.89428 1.19559 0.95842 1.29903 1.03682 0.90464 1.25893 0.98062 0.92891 0.97750 1.69759 1.31200 1.25357 1.17475 0.86136 0.81666 0.78704 0.79418 1.18537 1.19983 1.19955 1.20813 0.96516 0.98321 1.06820 1.20410 0.93289 0.96842 0.99845 0.89110 0.93861 0.93827 0.92237 0.90702 0.90260 0.88889 0.90469 0.76778 0.88161 0.88255 0.76892 0.88984 0.84953 0.91140 0.88454 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.31 9.92 -44.85 -0.44 -3.75 16 3 C 0.05 0.39 4.56 37.16 0.17 0.56 16 4 C 0.16 1.57 1.13 -91.77 -0.10 1.46 16 5 C -0.14 -1.27 8.68 37.15 0.32 -0.95 16 6 O -0.52 -5.73 12.66 -57.99 -0.73 -6.47 16 7 C 0.44 5.18 6.80 36.01 0.24 5.43 16 8 O -0.50 -6.35 15.84 -18.75 -0.30 -6.64 16 9 O -0.31 -4.32 9.51 -48.34 -0.46 -4.78 16 10 C 0.05 0.59 5.95 36.01 0.21 0.81 16 11 C 0.50 8.49 7.74 -10.99 -0.09 8.40 16 12 O -0.50 -10.98 13.93 -14.11 -0.20 -11.17 16 13 N -0.64 -10.81 5.30 -9.74 -0.05 -10.86 16 14 C 0.00 0.00 6.30 -83.57 -0.53 -0.53 16 15 C -0.12 -2.62 9.90 -39.79 -0.39 -3.02 16 16 C -0.14 -3.58 8.62 -39.26 -0.34 -3.92 16 17 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 18 C -0.46 -12.16 9.02 -37.85 -0.34 -12.50 16 19 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 20 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 21 N -0.81 -20.90 10.60 55.55 0.59 -20.31 16 22 Si 0.92 18.87 29.56 -169.99 -5.03 13.85 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 C -0.20 -5.15 9.74 -39.26 -0.38 -5.53 16 27 C -0.08 -1.99 8.61 -39.79 -0.34 -2.34 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.82 7.68 -51.92 -0.40 0.42 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.38 2.97 9.04 45.56 0.41 3.38 16 37 H 0.10 1.05 8.13 -51.93 -0.42 0.62 16 38 H 0.10 1.01 8.13 -51.93 -0.42 0.59 16 39 H 0.40 4.97 8.82 -40.82 -0.36 4.61 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.13 3.46 6.13 -52.48 -0.32 3.14 16 42 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 43 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 44 H 0.11 2.53 6.23 -52.48 -0.33 2.21 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -33.36 380.83 -7.20 -40.55 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -5.18 Total: 10.96 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.14 Total: -7.11 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.54 Total: -31.17 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -2.13 Total: -32.81 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.36 -7.20 -40.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745318017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.178 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds