Wall clock time and date at job start Tue Mar 31 2020 20:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00363 * 2 1 4 4 C 1.52995 * 109.47009 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47504 * 60.00286 * 4 3 2 6 6 O 1.42899 * 109.47191 * 299.99704 * 4 3 2 7 7 C 1.50709 * 109.46989 * 179.97438 * 4 3 2 8 8 O 1.20821 * 119.99621 * 335.00435 * 7 4 3 9 9 O 1.34230 * 119.99634 * 154.99571 * 7 4 3 10 10 C 1.45207 * 116.99247 * 180.02562 * 9 7 4 11 11 C 1.50701 * 109.46662 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00208 * 359.72502 * 11 10 9 13 13 N 1.34771 * 120.00034 * 179.97438 * 11 10 9 14 14 C 1.39242 * 120.00283 * 175.70147 * 13 11 10 15 15 C 1.39478 * 119.83626 * 214.99647 * 14 13 11 16 16 C 1.36371 * 120.16900 * 179.76076 * 15 14 13 17 17 C 1.40871 * 119.82814 * 0.51466 * 16 15 14 18 18 C 1.41151 * 120.16332 * 179.71947 * 17 16 15 19 19 H 1.08008 * 119.99993 * 214.80476 * 18 17 16 20 20 C 1.39908 * 120.00071 * 34.80442 * 18 17 16 21 21 N 1.30860 * 120.00207 * 355.55453 * 20 18 17 22 22 Si 1.86802 * 119.99797 * 175.55254 * 20 18 17 23 23 H 1.48502 * 109.47125 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46723 * 119.99806 * 22 20 18 25 25 H 1.48497 * 109.47173 * 239.99773 * 22 20 18 26 26 C 1.40861 * 119.67150 * 359.73935 * 17 16 15 27 27 C 1.36375 * 119.83011 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47801 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47162 * 300.00341 * 1 2 3 30 30 H 1.08998 * 109.47080 * 59.99555 * 1 2 3 31 31 H 1.08999 * 109.46943 * 60.00144 * 3 2 1 32 32 H 1.08997 * 109.46803 * 300.00227 * 3 2 1 33 33 H 1.09001 * 109.47675 * 179.97438 * 5 4 3 34 34 H 1.09009 * 109.47254 * 300.00074 * 5 4 3 35 35 H 1.09002 * 109.47606 * 59.99425 * 5 4 3 36 36 H 0.96700 * 114.00187 * 300.00403 * 6 4 3 37 37 H 1.09000 * 109.47262 * 60.00533 * 10 9 7 38 38 H 1.08998 * 109.47264 * 300.00254 * 10 9 7 39 39 H 0.97002 * 120.00323 * 355.71108 * 13 11 10 40 40 H 1.08002 * 119.91712 * 0.02562 * 15 14 13 41 41 H 1.08005 * 120.08599 * 180.25484 * 16 15 14 42 42 H 0.97000 * 120.00407 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.08717 * 179.97438 * 26 17 16 44 44 H 1.08003 * 119.91537 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9864 0.4255 -1.2501 6 8 3.9575 0.4752 1.1658 7 6 4.1485 2.5613 -0.0013 8 8 3.5277 3.4987 -0.4434 9 8 5.3842 2.7458 0.4895 10 6 5.9108 4.0987 0.4573 11 6 7.2986 4.1115 1.0446 12 8 7.7930 3.0828 1.4550 13 7 7.9884 5.2669 1.1185 14 6 9.2332 5.2960 1.7417 15 6 9.6212 6.4240 2.4645 16 6 10.8369 6.4579 3.0816 17 6 11.7059 5.3540 2.9786 18 6 12.9682 5.3839 3.6096 19 1 13.8154 4.9004 3.1457 20 6 13.1220 6.0396 4.8358 21 7 12.1183 6.6991 5.3556 22 14 14.7602 5.9739 5.7311 23 1 15.7256 5.1707 4.9385 24 1 15.2864 7.3520 5.9022 25 1 14.5710 5.3473 7.0641 26 6 11.3092 4.2205 2.2425 27 6 10.0885 4.1994 1.6348 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 5.0730 0.3398 -1.2509 34 1 3.5430 -0.5703 -1.2502 35 1 3.6645 0.9666 -2.1400 36 1 3.7053 0.8998 1.9972 37 1 5.2635 4.7546 1.0394 38 1 5.9499 4.4489 -0.5742 39 1 7.6177 6.0784 0.7377 40 1 8.9555 7.2712 2.5392 41 1 11.1342 7.3304 3.6444 42 1 12.2250 7.1541 6.2056 43 1 11.9704 3.3706 2.1588 44 1 9.7831 3.3311 1.0697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745318017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:34 Heat of formation + Delta-G solvation = -205.556414 kcal Electronic energy + Delta-G solvation = -28176.752241 eV Core-core repulsion = 23865.947587 eV Total energy + Delta-G solvation = -4310.804653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18713 -41.18717 -39.57119 -39.03259 -37.70022 -37.61147 -36.19671 -34.78268 -32.95630 -31.59368 -31.29736 -29.73060 -28.51848 -26.98613 -26.60918 -24.81652 -23.44835 -22.66421 -21.57841 -21.38185 -19.86319 -19.29157 -18.89269 -18.06504 -17.89027 -17.80201 -17.34091 -17.04165 -16.98983 -16.74757 -16.23951 -15.73089 -15.61633 -15.21676 -14.94320 -14.78690 -14.51233 -14.19415 -14.10843 -13.92220 -13.60436 -13.52324 -13.34776 -13.26532 -13.17491 -12.89605 -12.85910 -12.77558 -12.49197 -12.43430 -12.00600 -11.80635 -11.78589 -11.40362 -11.26187 -11.22287 -10.87400 -10.72750 -10.65332 -9.48449 -8.77289 -8.52049 -6.34799 0.72278 0.76086 0.96144 1.12355 1.39641 1.40411 1.54451 1.66049 2.19314 2.24515 2.77863 2.80492 3.03535 3.33111 3.51968 3.62084 3.65254 3.69316 3.97107 3.99808 4.28547 4.36281 4.38682 4.50695 4.53075 4.56382 4.67506 4.70005 4.87684 4.91470 4.99806 5.10313 5.12641 5.14071 5.30568 5.40345 5.68157 5.87188 5.98305 6.02738 6.11447 6.26178 6.37305 6.55407 6.61538 6.67045 6.95543 6.97368 7.25674 8.40926 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.001837 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.263716 B =15239.178299 C =15501.881028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.052 3.948 4 C 0.154 3.846 5 C -0.140 4.140 6 O -0.540 6.540 7 C 0.448 3.552 8 O -0.510 6.510 9 O -0.334 6.334 10 C 0.055 3.945 11 C 0.499 3.501 12 O -0.556 6.556 13 N -0.635 5.635 14 C 0.018 3.982 15 C -0.114 4.114 16 C -0.159 4.159 17 C 0.068 3.932 18 C -0.497 4.497 19 H 0.072 0.928 20 C 0.028 3.972 21 N -0.840 5.840 22 Si 0.988 3.012 23 H -0.261 1.261 24 H -0.262 1.262 25 H -0.270 1.270 26 C -0.221 4.221 27 C -0.097 4.097 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.395 0.605 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.423 0.577 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.285 0.715 43 H 0.095 0.905 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.287 -4.690 -10.406 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.025 4.025 4 C 0.111 3.889 5 C -0.197 4.197 6 O -0.347 6.347 7 C 0.290 3.710 8 O -0.398 6.398 9 O -0.249 6.249 10 C -0.021 4.021 11 C 0.286 3.714 12 O -0.433 6.433 13 N -0.282 5.282 14 C -0.075 4.075 15 C -0.134 4.134 16 C -0.179 4.179 17 C 0.065 3.935 18 C -0.527 4.527 19 H 0.091 0.909 20 C -0.184 4.184 21 N -0.468 5.468 22 Si 0.809 3.191 23 H -0.185 1.185 24 H -0.187 1.187 25 H -0.195 1.195 26 C -0.241 4.241 27 C -0.117 4.117 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.245 0.755 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.261 0.739 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.856 -5.552 -10.490 24.870 hybrid contribution 0.297 1.088 0.862 1.419 sum -21.559 -4.464 -9.628 24.029 Atomic orbital electron populations 1.23001 0.78796 1.04213 1.01149 1.87875 1.21695 1.26252 1.95642 1.22872 0.90198 0.86017 1.03389 1.21116 0.92549 0.84303 0.90959 1.21800 1.02803 1.02101 0.92952 1.86689 1.81052 1.51237 1.15771 1.24896 0.79430 0.92733 0.73949 1.90681 1.62197 1.43653 1.43308 1.86649 1.31749 1.32261 1.74245 1.22824 0.91597 0.82458 1.05268 1.20666 0.87434 0.83782 0.79495 1.90752 1.70656 1.33651 1.48250 1.42637 1.17134 1.11753 1.56629 1.17253 0.86861 0.97852 1.05552 1.20568 0.97471 0.97593 0.97774 1.21185 0.95312 0.99249 1.02157 1.18067 0.94313 0.90573 0.90523 1.19766 0.96018 1.31807 1.05142 0.90949 1.26728 1.01752 0.92037 0.97875 1.69813 1.32995 1.25860 1.18102 0.85060 0.76996 0.79155 0.77858 1.18453 1.18658 1.19462 1.20926 0.97394 0.98265 1.07516 1.20526 0.93266 0.97743 1.00137 0.88110 0.93078 0.92751 0.91319 0.90027 0.91493 0.88747 0.88833 0.75500 0.85252 0.85182 0.73931 0.85300 0.86192 0.90410 0.88651 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.40 -6.32 9.92 -139.78 -1.39 -7.71 16 3 C 0.05 0.78 4.56 71.98 0.33 1.10 16 4 C 0.15 2.87 1.13 -11.54 -0.01 2.85 16 5 C -0.14 -2.39 8.68 71.98 0.62 -1.77 16 6 O -0.54 -11.44 12.66 -127.22 -1.61 -13.06 16 7 C 0.45 9.59 6.80 71.24 0.48 10.07 16 8 O -0.51 -11.36 15.84 21.98 0.35 -11.01 16 9 O -0.33 -8.66 9.51 -42.72 -0.41 -9.07 16 10 C 0.06 1.21 5.95 71.24 0.42 1.63 16 11 C 0.50 16.05 7.74 87.66 0.68 16.73 16 12 O -0.56 -23.99 13.93 15.74 0.22 -23.77 16 13 N -0.63 -19.68 5.30 -303.11 -1.61 -21.29 16 14 C 0.02 0.77 6.30 38.56 0.24 1.01 16 15 C -0.11 -4.95 9.90 22.13 0.22 -4.73 16 16 C -0.16 -8.17 8.62 22.48 0.19 -7.98 16 17 C 0.07 3.72 5.55 -21.28 -0.12 3.60 16 18 C -0.50 -27.31 9.02 23.39 0.21 -27.10 16 19 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 20 C 0.03 1.44 5.42 85.24 0.46 1.90 16 21 N -0.84 -44.04 10.60 21.82 0.23 -43.81 16 22 Si 0.99 39.11 29.56 68.60 2.03 41.14 16 23 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 25 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 26 C -0.22 -11.54 9.74 22.48 0.22 -11.32 16 27 C -0.10 -4.65 8.61 22.13 0.19 -4.46 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 1.09 7.87 -2.39 -0.02 1.07 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.58 7.68 -2.38 -0.02 1.56 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 36 H 0.39 5.81 9.04 -74.06 -0.67 5.14 16 37 H 0.13 2.15 8.13 -2.39 -0.02 2.13 16 38 H 0.13 2.11 8.13 -2.39 -0.02 2.09 16 39 H 0.42 8.95 8.82 -92.71 -0.82 8.14 16 40 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 41 H 0.12 6.42 6.13 -2.91 -0.02 6.40 16 42 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 43 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 44 H 0.11 5.13 6.23 -2.91 -0.02 5.11 16 Total: -1.00 -74.17 380.83 2.78 -71.40 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.43 Total: 34.17 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 5.39 Total: -16.99 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -1.38 Total: -65.10 kcal Atomic # 8 Polarization: -61.78 SS G_CDS: -2.84 Total: -64.61 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -74.17 2.78 -71.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745318017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.159 kcal (2) G-P(sol) polarization free energy of solvation -74.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds