Wall clock time and date at job start Tue Mar 31 2020 20:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99516 * 2 1 4 4 C 1.52991 * 109.46990 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.47385 * 305.00365 * 4 3 2 6 6 O 1.42909 * 109.47337 * 64.99981 * 4 3 2 7 7 C 1.50701 * 109.47421 * 185.00087 * 4 3 2 8 8 O 1.20821 * 119.99631 * 25.00135 * 7 4 3 9 9 O 1.34228 * 120.00170 * 204.99961 * 7 4 3 10 10 C 1.45201 * 116.99819 * 179.97438 * 9 7 4 11 11 C 1.50705 * 109.46838 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99768 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99595 * 179.97438 * 11 10 9 14 14 C 1.39235 * 119.99732 * 175.70736 * 13 11 10 15 15 C 1.39478 * 119.83326 * 215.01399 * 14 13 11 16 16 C 1.36376 * 120.17196 * 179.75912 * 15 14 13 17 17 C 1.40875 * 119.82416 * 0.51108 * 16 15 14 18 18 C 1.41146 * 120.16342 * 179.71351 * 17 16 15 19 19 H 1.08000 * 120.00365 * 214.80567 * 18 17 16 20 20 C 1.39911 * 119.99926 * 34.81111 * 18 17 16 21 21 N 1.30869 * 119.99708 * 355.55781 * 20 18 17 22 22 Si 1.86800 * 120.00021 * 175.55670 * 20 18 17 23 23 H 1.48496 * 109.47202 * 59.99929 * 22 20 18 24 24 H 1.48501 * 109.47160 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47005 * 299.99884 * 22 20 18 26 26 C 1.40876 * 119.67263 * 359.74701 * 17 16 15 27 27 C 1.36376 * 119.82573 * 359.97438 * 26 17 16 28 28 H 1.09004 * 109.46913 * 299.99121 * 1 2 3 29 29 H 1.08990 * 109.47549 * 59.99776 * 1 2 3 30 30 H 1.09010 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46831 * 300.00070 * 3 2 1 32 32 H 1.08997 * 109.47078 * 60.00189 * 3 2 1 33 33 H 1.09000 * 109.46813 * 59.99530 * 5 4 3 34 34 H 1.08995 * 109.47203 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.46759 * 299.99941 * 5 4 3 36 36 H 0.96700 * 113.99659 * 59.99832 * 6 4 3 37 37 H 1.09005 * 109.47001 * 300.00148 * 10 9 7 38 38 H 1.08993 * 109.46862 * 60.00019 * 10 9 7 39 39 H 0.97002 * 119.99935 * 355.71042 * 13 11 10 40 40 H 1.07999 * 119.91676 * 0.02562 * 15 14 13 41 41 H 1.08002 * 120.08998 * 180.25427 * 16 15 14 42 42 H 0.97000 * 119.99737 * 180.02562 * 21 20 18 43 43 H 1.07993 * 120.08632 * 179.97438 * 26 17 16 44 44 H 1.07998 * 119.91295 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1849 -0.0006 5 6 3.9790 0.3195 1.1806 6 8 3.9648 0.5799 -1.2220 7 6 4.1479 2.5562 0.1232 8 8 3.5241 3.4518 0.6414 9 8 5.3864 2.7825 -0.3421 10 6 5.9124 4.1273 -0.1894 11 6 7.3033 4.1911 -0.7661 12 8 7.8022 3.2007 -1.2569 13 7 7.9926 5.3489 -0.7363 14 6 9.3094 5.3869 -1.1871 15 6 10.2333 6.2236 -0.5612 16 6 11.5259 6.2626 -0.9940 17 6 11.9246 5.4629 -2.0831 18 6 13.2592 5.5022 -2.5408 19 1 13.4722 5.3953 -3.5942 20 6 14.3062 5.6795 -1.6299 21 7 14.0443 5.8957 -0.3660 22 14 16.0779 5.6074 -2.2176 23 1 16.3051 6.6645 -3.2355 24 1 16.9905 5.8237 -1.0663 25 1 16.3464 4.2761 -2.8182 26 6 10.9844 4.6244 -2.7137 27 6 9.6967 4.5920 -2.2659 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6884 1.8464 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 3.5359 -0.6724 1.0910 34 1 5.0656 0.2339 1.1804 35 1 3.6515 0.7809 2.1122 36 1 3.7174 1.0755 -2.0147 37 1 5.2683 4.8314 -0.7163 38 1 5.9451 4.3866 0.8688 39 1 7.5714 6.1557 -0.4007 40 1 9.9252 6.8390 0.2711 41 1 12.2412 6.9079 -0.5058 42 1 14.7702 6.0190 0.2655 43 1 11.2826 4.0089 -3.5494 44 1 8.9746 3.9500 -2.7484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745318019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:37 Heat of formation + Delta-G solvation = -182.536269 kcal Electronic energy + Delta-G solvation = -28170.895812 eV Core-core repulsion = 23861.089387 eV Total energy + Delta-G solvation = -4309.806425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24416 -39.74253 -38.76401 -37.41564 -36.91113 -36.61561 -34.50270 -33.01108 -32.18978 -29.93999 -29.53691 -28.29794 -27.90703 -26.35045 -24.98040 -23.85131 -21.74027 -20.92505 -20.70389 -19.83416 -18.99505 -17.68364 -17.36830 -17.11184 -16.83647 -16.76436 -16.35168 -16.22710 -15.89871 -15.20228 -15.04466 -14.56897 -14.29190 -14.05668 -13.92218 -13.36763 -13.21529 -12.83559 -12.79328 -12.68196 -12.67765 -12.38985 -12.17221 -12.13013 -11.88807 -11.75164 -11.40878 -11.18845 -11.10220 -11.07258 -10.96198 -10.75812 -10.43464 -10.15630 -10.07656 -9.53683 -9.50568 -9.18960 -8.94165 -7.58907 -6.92475 -6.64922 -4.37778 1.65227 1.86532 2.44703 2.95253 3.05926 3.08236 3.10731 3.18539 3.30912 3.61512 3.74213 3.96088 4.09621 4.30021 4.40449 4.65917 4.75857 4.82768 4.87319 4.88803 4.94213 4.97269 5.04586 5.23030 5.37402 5.44613 5.61391 5.82868 5.96653 6.14832 6.39705 6.55207 6.66881 6.84763 7.01274 7.02869 7.14762 7.24967 7.34310 7.59732 7.67007 7.80699 8.02123 8.16656 8.27553 8.54815 8.63838 8.89376 8.95283 10.26080 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.032491 B = 0.001825 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.577903 B =15338.278347 C =15651.998516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.156 3.844 5 C -0.139 4.139 6 O -0.522 6.522 7 C 0.441 3.559 8 O -0.504 6.504 9 O -0.311 6.311 10 C 0.047 3.953 11 C 0.498 3.502 12 O -0.504 6.504 13 N -0.645 5.645 14 C -0.001 4.001 15 C -0.118 4.118 16 C -0.142 4.142 17 C 0.101 3.899 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.811 5.811 22 Si 0.917 3.083 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.205 4.205 27 C -0.084 4.084 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.383 0.617 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.397 0.603 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.279 0.721 43 H 0.097 0.903 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.776 -4.636 3.411 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C -0.031 4.031 4 C 0.113 3.887 5 C -0.196 4.196 6 O -0.328 6.328 7 C 0.282 3.718 8 O -0.392 6.392 9 O -0.225 6.225 10 C -0.030 4.030 11 C 0.282 3.718 12 O -0.379 6.379 13 N -0.290 5.290 14 C -0.093 4.093 15 C -0.138 4.138 16 C -0.162 4.162 17 C 0.099 3.901 18 C -0.491 4.491 19 H 0.094 0.906 20 C -0.146 4.146 21 N -0.438 5.438 22 Si 0.742 3.258 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.225 4.225 27 C -0.104 4.104 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.231 0.769 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.100 -5.659 3.853 23.136 hybrid contribution 0.086 1.280 -0.179 1.295 sum -22.014 -4.379 3.673 22.744 Atomic orbital electron populations 1.22809 0.80363 1.03169 1.00228 1.87905 1.19978 1.26037 1.95478 1.22939 0.91584 0.85913 1.02626 1.20959 0.91424 0.86467 0.89900 1.21749 1.03594 1.00764 0.93473 1.86729 1.80615 1.51246 1.14198 1.24631 0.80312 0.91572 0.75268 1.90687 1.62262 1.45657 1.40581 1.86654 1.30367 1.32454 1.72983 1.22831 0.94445 0.82430 1.03333 1.19881 0.86392 0.84151 0.81361 1.90759 1.69042 1.34761 1.43310 1.42774 1.13076 1.09822 1.63303 1.17215 0.82504 1.08760 1.00775 1.20306 0.93848 1.00655 0.98984 1.21195 0.93345 1.01223 1.00411 1.17745 0.92649 0.88406 0.91335 1.19487 0.90672 1.43842 0.95065 0.90557 1.25893 1.01647 0.92456 0.94577 1.69747 1.34459 1.36619 1.02940 0.86230 0.80871 0.79796 0.78944 1.19025 1.20412 1.19056 1.20812 0.93832 1.03293 1.04595 1.20407 0.96572 0.98603 0.94787 0.93805 0.93876 0.89117 0.92234 0.90594 0.88820 0.90274 0.90463 0.76866 0.88312 0.88107 0.76892 0.88982 0.84956 0.91022 0.88467 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.28 9.79 -40.08 -0.39 -3.68 16 3 C 0.05 0.39 4.70 37.15 0.17 0.56 16 4 C 0.16 1.57 1.15 -91.77 -0.11 1.46 16 5 C -0.14 -1.31 8.63 37.16 0.32 -0.99 16 6 O -0.52 -5.64 12.74 -55.81 -0.71 -6.35 16 7 C 0.44 5.19 6.80 36.01 0.24 5.44 16 8 O -0.50 -6.35 15.74 -18.75 -0.29 -6.64 16 9 O -0.31 -4.32 9.51 -48.34 -0.46 -4.78 16 10 C 0.05 0.59 5.95 36.01 0.21 0.80 16 11 C 0.50 8.49 7.74 -10.98 -0.08 8.41 16 12 O -0.50 -10.98 13.92 -14.10 -0.20 -11.18 16 13 N -0.64 -10.82 5.30 -9.74 -0.05 -10.87 16 14 C 0.00 -0.02 6.31 -83.57 -0.53 -0.54 16 15 C -0.12 -2.62 9.90 -39.79 -0.39 -3.02 16 16 C -0.14 -3.59 8.62 -39.26 -0.34 -3.93 16 17 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 18 C -0.46 -12.18 9.02 -37.85 -0.34 -12.52 16 19 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 20 C 0.07 1.75 5.42 -17.34 -0.09 1.65 16 21 N -0.81 -20.91 10.60 55.55 0.59 -20.33 16 22 Si 0.92 18.88 29.56 -169.99 -5.03 13.86 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.21 -5.16 9.74 -39.26 -0.38 -5.55 16 27 C -0.08 -1.99 8.61 -39.79 -0.34 -2.33 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.61 7.69 -51.93 -0.40 0.21 16 33 H 0.09 0.86 7.56 -51.93 -0.39 0.46 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.38 2.79 9.04 45.56 0.41 3.20 16 37 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 38 H 0.10 1.08 8.13 -51.93 -0.42 0.65 16 39 H 0.40 4.97 8.82 -40.82 -0.36 4.61 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.13 3.46 6.13 -52.49 -0.32 3.14 16 42 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 43 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 44 H 0.11 2.53 6.22 -52.49 -0.33 2.20 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -33.35 380.44 -7.11 -40.45 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.16 Total: 10.95 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.14 Total: -7.17 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.54 Total: -31.19 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -2.05 Total: -32.63 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.35 -7.11 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745318019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.084 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds