Wall clock time and date at job start Tue Mar 31 2020 20:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99516 * 2 1 4 4 C 1.52991 * 109.46990 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.47385 * 305.00365 * 4 3 2 6 6 O 1.42909 * 109.47337 * 64.99981 * 4 3 2 7 7 C 1.50701 * 109.47421 * 185.00087 * 4 3 2 8 8 O 1.20821 * 119.99631 * 25.00135 * 7 4 3 9 9 O 1.34228 * 120.00170 * 204.99961 * 7 4 3 10 10 C 1.45201 * 116.99819 * 179.97438 * 9 7 4 11 11 C 1.50705 * 109.46838 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99768 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99595 * 179.97438 * 11 10 9 14 14 C 1.39235 * 119.99732 * 175.70736 * 13 11 10 15 15 C 1.39478 * 119.83326 * 215.01399 * 14 13 11 16 16 C 1.36376 * 120.17196 * 179.75912 * 15 14 13 17 17 C 1.40875 * 119.82416 * 0.51108 * 16 15 14 18 18 C 1.41146 * 120.16342 * 179.71351 * 17 16 15 19 19 H 1.08000 * 120.00365 * 214.80567 * 18 17 16 20 20 C 1.39911 * 119.99926 * 34.81111 * 18 17 16 21 21 N 1.30869 * 119.99708 * 355.55781 * 20 18 17 22 22 Si 1.86800 * 120.00021 * 175.55670 * 20 18 17 23 23 H 1.48496 * 109.47202 * 59.99929 * 22 20 18 24 24 H 1.48501 * 109.47160 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47005 * 299.99884 * 22 20 18 26 26 C 1.40876 * 119.67263 * 359.74701 * 17 16 15 27 27 C 1.36376 * 119.82573 * 359.97438 * 26 17 16 28 28 H 1.09004 * 109.46913 * 299.99121 * 1 2 3 29 29 H 1.08990 * 109.47549 * 59.99776 * 1 2 3 30 30 H 1.09010 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46831 * 300.00070 * 3 2 1 32 32 H 1.08997 * 109.47078 * 60.00189 * 3 2 1 33 33 H 1.09000 * 109.46813 * 59.99530 * 5 4 3 34 34 H 1.08995 * 109.47203 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.46759 * 299.99941 * 5 4 3 36 36 H 0.96700 * 113.99659 * 59.99832 * 6 4 3 37 37 H 1.09005 * 109.47001 * 300.00148 * 10 9 7 38 38 H 1.08993 * 109.46862 * 60.00019 * 10 9 7 39 39 H 0.97002 * 119.99935 * 355.71042 * 13 11 10 40 40 H 1.07999 * 119.91676 * 0.02562 * 15 14 13 41 41 H 1.08002 * 120.08998 * 180.25427 * 16 15 14 42 42 H 0.97000 * 119.99737 * 180.02562 * 21 20 18 43 43 H 1.07993 * 120.08632 * 179.97438 * 26 17 16 44 44 H 1.07998 * 119.91295 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1849 -0.0006 5 6 3.9790 0.3195 1.1806 6 8 3.9648 0.5799 -1.2220 7 6 4.1479 2.5562 0.1232 8 8 3.5241 3.4518 0.6414 9 8 5.3864 2.7825 -0.3421 10 6 5.9124 4.1273 -0.1894 11 6 7.3033 4.1911 -0.7661 12 8 7.8022 3.2007 -1.2569 13 7 7.9926 5.3489 -0.7363 14 6 9.3094 5.3869 -1.1871 15 6 10.2333 6.2236 -0.5612 16 6 11.5259 6.2626 -0.9940 17 6 11.9246 5.4629 -2.0831 18 6 13.2592 5.5022 -2.5408 19 1 13.4722 5.3953 -3.5942 20 6 14.3062 5.6795 -1.6299 21 7 14.0443 5.8957 -0.3660 22 14 16.0779 5.6074 -2.2176 23 1 16.3051 6.6645 -3.2355 24 1 16.9905 5.8237 -1.0663 25 1 16.3464 4.2761 -2.8182 26 6 10.9844 4.6244 -2.7137 27 6 9.6967 4.5920 -2.2659 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6884 1.8464 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 3.5359 -0.6724 1.0910 34 1 5.0656 0.2339 1.1804 35 1 3.6515 0.7809 2.1122 36 1 3.7174 1.0755 -2.0147 37 1 5.2683 4.8314 -0.7163 38 1 5.9451 4.3866 0.8688 39 1 7.5714 6.1557 -0.4007 40 1 9.9252 6.8390 0.2711 41 1 12.2412 6.9079 -0.5058 42 1 14.7702 6.0190 0.2655 43 1 11.2826 4.0089 -3.5494 44 1 8.9746 3.9500 -2.7484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745318019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:37 Heat of formation + Delta-G solvation = -205.507108 kcal Electronic energy + Delta-G solvation = -28171.891902 eV Core-core repulsion = 23861.089387 eV Total energy + Delta-G solvation = -4310.802515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18994 -41.18753 -39.57111 -39.02972 -37.69964 -37.62277 -36.19536 -34.78007 -32.94500 -31.59080 -31.29524 -29.72907 -28.51076 -27.00633 -26.61019 -24.80879 -23.44550 -22.66173 -21.57566 -21.38206 -19.86758 -19.28685 -18.89135 -18.04098 -17.92857 -17.79760 -17.34888 -17.04837 -16.99079 -16.71483 -16.23583 -15.76606 -15.59748 -15.23851 -14.86697 -14.83270 -14.50311 -14.23237 -14.05613 -13.93687 -13.60843 -13.52945 -13.35037 -13.25174 -13.15183 -12.88708 -12.87584 -12.77278 -12.48825 -12.43395 -12.00706 -11.80954 -11.80515 -11.41044 -11.25366 -11.22621 -10.86991 -10.72093 -10.65014 -9.48208 -8.77098 -8.51607 -6.34514 0.73006 0.75789 0.96270 1.12627 1.39929 1.42765 1.51452 1.66648 2.19539 2.24626 2.78525 2.81921 3.01656 3.33175 3.51910 3.62612 3.65223 3.69110 3.96593 4.00359 4.29040 4.35806 4.38837 4.51078 4.53285 4.56699 4.67379 4.70281 4.87911 4.91646 4.99793 5.10591 5.12705 5.14412 5.30683 5.40481 5.68310 5.87380 5.98473 6.03188 6.11391 6.26225 6.37559 6.55991 6.61783 6.67029 6.95617 6.97540 7.25768 8.40968 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.032491 B = 0.001825 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.577903 B =15338.278347 C =15651.998516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.052 3.948 4 C 0.154 3.846 5 C -0.139 4.139 6 O -0.540 6.540 7 C 0.448 3.552 8 O -0.510 6.510 9 O -0.334 6.334 10 C 0.055 3.945 11 C 0.499 3.501 12 O -0.555 6.555 13 N -0.635 5.635 14 C 0.017 3.983 15 C -0.114 4.114 16 C -0.159 4.159 17 C 0.068 3.932 18 C -0.498 4.498 19 H 0.073 0.927 20 C 0.028 3.972 21 N -0.840 5.840 22 Si 0.988 3.012 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.266 1.266 26 C -0.221 4.221 27 C -0.096 4.096 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.395 0.605 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.423 0.577 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.285 0.715 43 H 0.096 0.904 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.620 -4.060 4.388 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.025 4.025 4 C 0.111 3.889 5 C -0.196 4.196 6 O -0.348 6.348 7 C 0.290 3.710 8 O -0.398 6.398 9 O -0.249 6.249 10 C -0.022 4.022 11 C 0.286 3.714 12 O -0.433 6.433 13 N -0.282 5.282 14 C -0.076 4.076 15 C -0.134 4.134 16 C -0.179 4.179 17 C 0.066 3.934 18 C -0.529 4.529 19 H 0.091 0.909 20 C -0.184 4.184 21 N -0.467 5.467 22 Si 0.809 3.191 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.191 1.191 26 C -0.241 4.241 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.246 0.754 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.261 0.739 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.006 -5.043 4.843 25.004 hybrid contribution 0.444 1.061 -0.455 1.237 sum -23.562 -3.982 4.388 24.296 Atomic orbital electron populations 1.23001 0.78788 1.04216 1.01152 1.87874 1.21718 1.26278 1.95649 1.22883 0.90116 0.86050 1.03440 1.21094 0.92578 0.85491 0.89730 1.21777 1.02686 1.01035 0.94130 1.86700 1.81040 1.51960 1.15105 1.24882 0.79450 0.92008 0.74650 1.90680 1.62210 1.45992 1.40952 1.86646 1.31511 1.33153 1.73587 1.22825 0.91620 0.82884 1.04821 1.20665 0.87796 0.83038 0.79874 1.90748 1.70575 1.36541 1.45435 1.42635 1.11286 1.11343 1.62889 1.17253 0.84613 1.06570 0.99151 1.20570 0.92721 1.00684 0.99463 1.21185 0.94594 1.01502 1.00658 1.18063 0.93292 0.89507 0.92577 1.19720 0.91614 1.46111 0.95408 0.90875 1.26734 1.05629 0.91525 0.94494 1.69809 1.35941 1.37114 1.03870 0.85158 0.75433 0.79729 0.78775 1.18170 1.19206 1.19101 1.20929 0.94615 1.03632 1.04972 1.20530 0.96072 0.99273 0.95765 0.92823 0.92984 0.88119 0.90994 0.90147 0.88689 0.91659 0.89003 0.75417 0.84945 0.85493 0.73933 0.85347 0.86213 0.90404 0.88626 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.40 -6.26 9.79 -144.34 -1.41 -7.67 16 3 C 0.05 0.76 4.70 71.98 0.34 1.10 16 4 C 0.15 2.88 1.15 -11.54 -0.01 2.86 16 5 C -0.14 -2.49 8.63 71.99 0.62 -1.87 16 6 O -0.54 -11.20 12.74 -129.31 -1.65 -12.84 16 7 C 0.45 9.60 6.80 71.24 0.48 10.08 16 8 O -0.51 -11.37 15.74 21.98 0.35 -11.03 16 9 O -0.33 -8.66 9.51 -42.71 -0.41 -9.06 16 10 C 0.06 1.21 5.95 71.24 0.42 1.63 16 11 C 0.50 16.05 7.74 87.66 0.68 16.73 16 12 O -0.56 -23.97 13.92 15.78 0.22 -23.75 16 13 N -0.63 -19.69 5.30 -303.11 -1.61 -21.30 16 14 C 0.02 0.74 6.31 38.56 0.24 0.98 16 15 C -0.11 -4.98 9.90 22.13 0.22 -4.76 16 16 C -0.16 -8.21 8.62 22.48 0.19 -8.01 16 17 C 0.07 3.74 5.55 -21.27 -0.12 3.62 16 18 C -0.50 -27.36 9.02 23.39 0.21 -27.15 16 19 H 0.07 3.88 7.85 -2.91 -0.02 3.85 16 20 C 0.03 1.45 5.42 85.24 0.46 1.91 16 21 N -0.84 -44.13 10.60 21.82 0.23 -43.90 16 22 Si 0.99 39.08 29.56 68.60 2.03 41.11 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 25 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 26 C -0.22 -11.55 9.74 22.48 0.22 -11.33 16 27 C -0.10 -4.63 8.61 22.13 0.19 -4.44 16 28 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 1.09 7.69 -2.39 -0.02 1.08 16 33 H 0.09 1.66 7.56 -2.39 -0.02 1.64 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.40 5.40 9.04 -74.06 -0.67 4.73 16 37 H 0.13 2.07 8.13 -2.38 -0.02 2.05 16 38 H 0.13 2.19 8.13 -2.39 -0.02 2.17 16 39 H 0.42 8.96 8.82 -92.71 -0.82 8.14 16 40 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 41 H 0.12 6.42 6.13 -2.91 -0.02 6.40 16 42 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 43 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 44 H 0.11 5.14 6.22 -2.91 -0.02 5.12 16 Total: -1.00 -74.17 380.44 2.72 -71.46 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -0.43 Total: 34.15 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 5.40 Total: -17.17 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -1.38 Total: -65.20 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -2.90 Total: -64.36 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -74.17 2.72 -71.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745318019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.052 kcal (2) G-P(sol) polarization free energy of solvation -74.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds