Wall clock time and date at job start Tue Mar 31 2020 20:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99772 * 2 1 4 4 C 1.53001 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47041 * 60.00110 * 4 3 2 6 6 O 1.42904 * 109.47334 * 300.00120 * 4 3 2 7 7 C 1.50696 * 109.47237 * 179.97438 * 4 3 2 8 8 O 1.20828 * 120.00019 * 335.00178 * 7 4 3 9 9 O 1.34233 * 120.00142 * 155.00071 * 7 4 3 10 10 C 1.45200 * 116.99875 * 180.02562 * 9 7 4 11 11 C 1.50699 * 109.46910 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00163 * 4.97627 * 11 10 9 13 13 N 1.34783 * 120.00032 * 184.97604 * 11 10 9 14 14 C 1.37136 * 120.00011 * 4.58711 * 13 11 10 15 15 H 1.08005 * 119.99474 * 311.70725 * 14 13 11 16 16 C 1.38881 * 120.00187 * 131.70550 * 14 13 11 17 17 N 1.31422 * 120.00056 * 352.02591 * 16 14 13 18 18 Si 1.86799 * 120.00267 * 172.02438 * 16 14 13 19 19 H 1.48502 * 109.46939 * 60.00003 * 18 16 14 20 20 H 1.48500 * 109.47260 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47404 * 300.00285 * 18 16 14 22 22 C 1.39790 * 119.99651 * 184.58482 * 13 11 10 23 23 C 1.38962 * 120.07085 * 172.06215 * 22 13 11 24 24 C 1.38085 * 119.91753 * 180.23266 * 23 22 13 25 25 C 1.38311 * 120.07844 * 359.47693 * 24 23 22 26 26 C 1.38311 * 120.15482 * 0.54699 * 25 24 23 27 27 C 1.38082 * 120.07765 * 359.70627 * 26 25 24 28 28 H 1.08999 * 109.47192 * 300.00524 * 1 2 3 29 29 H 1.09002 * 109.47056 * 59.99859 * 1 2 3 30 30 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47160 * 60.00231 * 3 2 1 32 32 H 1.09004 * 109.47224 * 299.99765 * 3 2 1 33 33 H 1.08998 * 109.46948 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47117 * 299.99515 * 5 4 3 35 35 H 1.08996 * 109.47749 * 59.99970 * 5 4 3 36 36 H 0.96696 * 113.99582 * 299.99840 * 6 4 3 37 37 H 1.09000 * 109.47475 * 59.99864 * 10 9 7 38 38 H 1.08999 * 109.47119 * 299.99706 * 10 9 7 39 39 H 0.97003 * 120.00634 * 185.01140 * 17 16 14 40 40 H 1.07995 * 120.04514 * 359.96373 * 23 22 13 41 41 H 1.08006 * 119.96156 * 179.75187 * 24 23 22 42 42 H 1.08003 * 119.92239 * 180.25406 * 25 24 23 43 43 H 1.07994 * 119.96000 * 179.72467 * 26 25 24 44 44 H 1.07997 * 120.03878 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9863 0.4256 -1.2502 6 8 3.9576 0.4753 1.1658 7 6 4.1484 2.5613 -0.0013 8 8 3.5276 3.4989 -0.4434 9 8 5.3841 2.7461 0.4894 10 6 5.9107 4.0988 0.4572 11 6 7.2980 4.1119 1.0456 12 8 7.8295 3.0708 1.3688 13 7 7.9482 5.2807 1.2126 14 6 7.3133 6.4642 0.9356 15 1 6.7777 6.5849 0.0055 16 6 7.3589 7.5076 1.8511 17 7 7.8731 7.3124 3.0447 18 14 6.6895 9.1883 1.3860 19 1 5.2483 9.0708 1.0476 20 1 6.8555 10.1211 2.5295 21 1 7.4329 9.7094 0.2109 22 6 9.2698 5.2863 1.6682 23 6 9.9956 6.4712 1.6846 24 6 11.3024 6.4723 2.1308 25 6 11.8855 5.2979 2.5711 26 6 11.1662 4.1167 2.5557 27 6 9.8607 4.1072 2.1060 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 5.0729 0.3392 -1.2504 34 1 3.5430 -0.5702 -1.2502 35 1 3.6644 0.9666 -2.1400 36 1 3.7054 0.8999 1.9971 37 1 5.2634 4.7547 1.0393 38 1 5.9498 4.4490 -0.5743 39 1 7.8395 8.0187 3.7088 40 1 9.5397 7.3893 1.3448 41 1 11.8684 7.3921 2.1401 42 1 12.9064 5.3024 2.9234 43 1 11.6260 3.2007 2.8960 44 1 9.2997 3.1845 2.0938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745318661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:40 Heat of formation + Delta-G solvation = -155.407694 kcal Electronic energy + Delta-G solvation = -29599.046471 eV Core-core repulsion = 25290.416429 eV Total energy + Delta-G solvation = -4308.630042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.81802 -39.74703 -38.53406 -37.31231 -36.64328 -36.19144 -35.09853 -32.04386 -31.94209 -29.85826 -29.58338 -27.84647 -27.45283 -26.08610 -25.29542 -23.70472 -21.78504 -21.20914 -20.35284 -19.62227 -18.62849 -18.02332 -16.78177 -16.70876 -16.52959 -16.21092 -16.07038 -15.74991 -15.51243 -15.19184 -14.72499 -14.49965 -14.12345 -13.95546 -13.71030 -13.12553 -13.03462 -12.85670 -12.60977 -12.56415 -12.46015 -12.29690 -12.11177 -11.92767 -11.80149 -11.63879 -11.52407 -11.36068 -11.07522 -10.86246 -10.79376 -10.56972 -10.43578 -10.12608 -10.07128 -9.90734 -9.42911 -8.86166 -8.25731 -7.79904 -6.96202 -6.43990 -4.58307 2.07191 2.30951 2.37702 2.56215 2.98771 3.06565 3.07634 3.52105 3.61184 3.88266 3.97274 4.24024 4.41744 4.54361 4.66582 4.88525 5.03002 5.04902 5.10576 5.18361 5.27719 5.37553 5.46689 5.58918 5.62559 5.64820 5.78176 5.87152 6.01096 6.01994 6.15381 6.49840 6.67222 6.70754 6.74995 6.84819 7.07608 7.16122 7.31019 7.47027 7.58584 7.60835 7.69459 7.77070 7.96756 8.36634 8.72273 9.08795 9.45182 10.38409 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.003138 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.196234 B = 8920.175382 C =10431.977556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.047 3.953 4 C 0.156 3.844 5 C -0.138 4.138 6 O -0.524 6.524 7 C 0.437 3.563 8 O -0.504 6.504 9 O -0.318 6.318 10 C 0.066 3.934 11 C 0.489 3.511 12 O -0.543 6.543 13 N -0.376 5.376 14 C -0.383 4.383 15 H 0.096 0.904 16 C 0.057 3.943 17 N -0.835 5.835 18 Si 0.919 3.081 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.267 1.267 22 C 0.189 3.811 23 C -0.095 4.095 24 C -0.123 4.123 25 C -0.171 4.171 26 C -0.120 4.120 27 C -0.186 4.186 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.383 0.617 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.278 0.722 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.392 -7.103 -4.789 12.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C -0.031 4.031 4 C 0.113 3.887 5 C -0.195 4.195 6 O -0.329 6.329 7 C 0.278 3.722 8 O -0.393 6.393 9 O -0.232 6.232 10 C -0.010 4.010 11 C 0.279 3.721 12 O -0.426 6.426 13 N -0.085 5.085 14 C -0.509 4.509 15 H 0.114 0.886 16 C -0.154 4.154 17 N -0.466 5.466 18 Si 0.744 3.256 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.192 1.192 22 C 0.092 3.908 23 C -0.116 4.116 24 C -0.142 4.142 25 C -0.190 4.190 26 C -0.139 4.139 27 C -0.206 4.206 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.231 0.769 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.142 0.858 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.920 -7.757 -5.037 12.849 hybrid contribution -0.819 2.146 0.449 2.340 sum -9.739 -5.611 -4.587 12.140 Atomic orbital electron populations 1.22791 0.80599 1.02962 1.00204 1.87897 1.19779 1.26258 1.95482 1.22945 0.91844 0.85629 1.02649 1.20923 0.91279 0.85728 0.90799 1.21739 1.03536 1.01530 0.92691 1.86677 1.80749 1.50637 1.14861 1.24452 0.80732 0.91934 0.75052 1.90687 1.62340 1.43318 1.42961 1.86567 1.30086 1.33226 1.73280 1.22707 0.95031 0.80023 1.03234 1.20082 0.86335 0.84156 0.81478 1.90273 1.66761 1.33189 1.52371 1.40844 1.07966 1.05294 1.54429 1.19402 1.36127 0.90260 1.05137 0.88606 1.25562 0.94950 1.00422 0.94469 1.69976 1.38711 1.34703 1.03245 0.86114 0.79875 0.80974 0.78666 1.19234 1.20411 1.19161 1.18040 0.83456 0.93733 0.95534 1.20777 0.92657 0.97503 1.00634 1.20717 0.95112 0.97060 1.01330 1.20782 0.99205 0.93586 1.05430 1.20847 0.94943 0.96968 1.01145 1.22657 0.96020 1.00557 1.01334 0.93931 0.93890 0.89272 0.92224 0.90716 0.90315 0.89173 0.90553 0.76853 0.87620 0.88782 0.91171 0.85785 0.87790 0.88153 0.87652 0.81095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.05 9.92 -44.85 -0.44 -4.50 16 3 C 0.05 0.51 4.56 37.16 0.17 0.68 16 4 C 0.16 2.01 1.13 -91.77 -0.10 1.91 16 5 C -0.14 -1.60 8.68 37.16 0.32 -1.27 16 6 O -0.52 -7.02 12.67 -57.99 -0.73 -7.76 16 7 C 0.44 6.91 6.80 36.00 0.24 7.16 16 8 O -0.50 -8.64 15.84 -18.75 -0.30 -8.93 16 9 O -0.32 -5.91 9.51 -48.34 -0.46 -6.37 16 10 C 0.07 1.31 4.71 36.01 0.17 1.48 16 11 C 0.49 11.48 7.65 -10.98 -0.08 11.40 16 12 O -0.54 -13.58 12.92 -14.05 -0.18 -13.76 16 13 N -0.38 -9.28 2.70 -58.98 -0.16 -9.44 16 14 C -0.38 -9.13 7.65 -14.94 -0.11 -9.25 16 15 H 0.10 2.13 7.55 -52.48 -0.40 1.74 16 16 C 0.06 1.35 3.62 -17.49 -0.06 1.29 16 17 N -0.84 -21.23 11.12 55.49 0.62 -20.61 16 18 Si 0.92 18.24 29.56 -169.99 -5.03 13.21 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 22 C 0.19 4.71 5.72 -83.69 -0.48 4.23 16 23 C -0.09 -2.24 7.56 -39.37 -0.30 -2.54 16 24 C -0.12 -2.58 10.04 -39.61 -0.40 -2.97 16 25 C -0.17 -3.39 10.04 -39.53 -0.40 -3.79 16 26 C -0.12 -2.52 10.04 -39.61 -0.40 -2.91 16 27 C -0.19 -4.45 9.04 -39.37 -0.36 -4.80 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.97 7.68 -51.93 -0.40 0.57 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.38 3.96 9.04 45.56 0.41 4.37 16 37 H 0.11 2.08 7.88 -51.93 -0.41 1.67 16 38 H 0.09 1.72 8.08 -51.93 -0.42 1.30 16 39 H 0.28 6.70 8.32 -40.82 -0.34 6.37 16 40 H 0.12 3.00 5.69 -52.49 -0.30 2.70 16 41 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 43 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.17 4.26 4.56 -56.10 -0.26 4.01 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -30.37 373.52 -6.84 -37.21 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.12 Total: 13.37 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -0.67 Total: 1.94 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.46 Total: -30.04 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -2.12 Total: -41.32 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.37 -6.84 -37.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745318661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.197 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds