Wall clock time and date at job start Tue Mar 31 2020 20:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99772 * 2 1 4 4 C 1.53001 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47041 * 60.00110 * 4 3 2 6 6 O 1.42904 * 109.47334 * 300.00120 * 4 3 2 7 7 C 1.50696 * 109.47237 * 179.97438 * 4 3 2 8 8 O 1.20828 * 120.00019 * 335.00178 * 7 4 3 9 9 O 1.34233 * 120.00142 * 155.00071 * 7 4 3 10 10 C 1.45200 * 116.99875 * 180.02562 * 9 7 4 11 11 C 1.50699 * 109.46910 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00163 * 4.97627 * 11 10 9 13 13 N 1.34783 * 120.00032 * 184.97604 * 11 10 9 14 14 C 1.37136 * 120.00011 * 4.58711 * 13 11 10 15 15 H 1.08005 * 119.99474 * 311.70725 * 14 13 11 16 16 C 1.38881 * 120.00187 * 131.70550 * 14 13 11 17 17 N 1.31422 * 120.00056 * 352.02591 * 16 14 13 18 18 Si 1.86799 * 120.00267 * 172.02438 * 16 14 13 19 19 H 1.48502 * 109.46939 * 60.00003 * 18 16 14 20 20 H 1.48500 * 109.47260 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47404 * 300.00285 * 18 16 14 22 22 C 1.39790 * 119.99651 * 184.58482 * 13 11 10 23 23 C 1.38962 * 120.07085 * 172.06215 * 22 13 11 24 24 C 1.38085 * 119.91753 * 180.23266 * 23 22 13 25 25 C 1.38311 * 120.07844 * 359.47693 * 24 23 22 26 26 C 1.38311 * 120.15482 * 0.54699 * 25 24 23 27 27 C 1.38082 * 120.07765 * 359.70627 * 26 25 24 28 28 H 1.08999 * 109.47192 * 300.00524 * 1 2 3 29 29 H 1.09002 * 109.47056 * 59.99859 * 1 2 3 30 30 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47160 * 60.00231 * 3 2 1 32 32 H 1.09004 * 109.47224 * 299.99765 * 3 2 1 33 33 H 1.08998 * 109.46948 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47117 * 299.99515 * 5 4 3 35 35 H 1.08996 * 109.47749 * 59.99970 * 5 4 3 36 36 H 0.96696 * 113.99582 * 299.99840 * 6 4 3 37 37 H 1.09000 * 109.47475 * 59.99864 * 10 9 7 38 38 H 1.08999 * 109.47119 * 299.99706 * 10 9 7 39 39 H 0.97003 * 120.00634 * 185.01140 * 17 16 14 40 40 H 1.07995 * 120.04514 * 359.96373 * 23 22 13 41 41 H 1.08006 * 119.96156 * 179.75187 * 24 23 22 42 42 H 1.08003 * 119.92239 * 180.25406 * 25 24 23 43 43 H 1.07994 * 119.96000 * 179.72467 * 26 25 24 44 44 H 1.07997 * 120.03878 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9863 0.4256 -1.2502 6 8 3.9576 0.4753 1.1658 7 6 4.1484 2.5613 -0.0013 8 8 3.5276 3.4989 -0.4434 9 8 5.3841 2.7461 0.4894 10 6 5.9107 4.0988 0.4572 11 6 7.2980 4.1119 1.0456 12 8 7.8295 3.0708 1.3688 13 7 7.9482 5.2807 1.2126 14 6 7.3133 6.4642 0.9356 15 1 6.7777 6.5849 0.0055 16 6 7.3589 7.5076 1.8511 17 7 7.8731 7.3124 3.0447 18 14 6.6895 9.1883 1.3860 19 1 5.2483 9.0708 1.0476 20 1 6.8555 10.1211 2.5295 21 1 7.4329 9.7094 0.2109 22 6 9.2698 5.2863 1.6682 23 6 9.9956 6.4712 1.6846 24 6 11.3024 6.4723 2.1308 25 6 11.8855 5.2979 2.5711 26 6 11.1662 4.1167 2.5557 27 6 9.8607 4.1072 2.1060 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 5.0729 0.3392 -1.2504 34 1 3.5430 -0.5702 -1.2502 35 1 3.6644 0.9666 -2.1400 36 1 3.7054 0.8999 1.9971 37 1 5.2634 4.7547 1.0393 38 1 5.9498 4.4490 -0.5743 39 1 7.8395 8.0187 3.7088 40 1 9.5397 7.3893 1.3448 41 1 11.8684 7.3921 2.1401 42 1 12.9064 5.3024 2.9234 43 1 11.6260 3.2007 2.8960 44 1 9.2997 3.1845 2.0938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745318661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:39 Heat of formation + Delta-G solvation = -173.978446 kcal Electronic energy + Delta-G solvation = -29599.851759 eV Core-core repulsion = 25290.416429 eV Total energy + Delta-G solvation = -4309.435330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.15888 -41.44317 -39.56553 -38.92370 -37.63594 -37.59396 -36.89373 -33.87463 -32.94138 -31.53325 -31.28246 -29.17149 -28.49499 -27.13832 -26.85435 -24.89744 -23.45333 -22.89912 -21.53581 -21.38323 -19.82161 -19.74163 -18.11986 -18.02040 -17.92999 -17.33363 -17.32249 -17.02678 -16.89711 -16.71801 -16.31331 -15.95301 -15.47216 -15.15104 -14.87856 -14.77285 -14.58507 -14.32590 -14.06625 -13.97154 -13.61002 -13.50025 -13.32859 -13.29377 -13.15965 -13.04295 -12.84542 -12.75334 -12.47973 -12.42321 -12.17192 -11.94263 -11.79098 -11.75843 -11.20965 -11.18615 -10.72444 -10.63094 -10.05669 -9.52325 -8.76124 -8.23221 -6.44591 0.63320 0.80255 0.82581 1.04651 1.40473 1.44840 1.53549 1.83920 2.20258 2.50776 2.86543 2.88275 3.06079 3.33397 3.36505 3.62781 3.64809 3.79388 4.05382 4.17339 4.29172 4.33025 4.36171 4.36500 4.54432 4.56724 4.59604 4.68563 4.72160 4.87358 4.92736 4.97858 5.07865 5.11416 5.17678 5.29656 5.41398 5.76240 5.83751 5.88186 5.98224 6.02495 6.19045 6.28524 6.56201 6.59951 6.90228 7.28208 7.64516 8.59283 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.003138 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.196234 B = 8920.175382 C =10431.977556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.054 3.946 4 C 0.158 3.842 5 C -0.138 4.138 6 O -0.537 6.537 7 C 0.439 3.561 8 O -0.517 6.517 9 O -0.333 6.333 10 C 0.078 3.922 11 C 0.476 3.524 12 O -0.568 6.568 13 N -0.388 5.388 14 C -0.396 4.396 15 H 0.107 0.893 16 C 0.023 3.977 17 N -0.870 5.870 18 Si 0.984 3.016 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.260 1.260 22 C 0.157 3.843 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.162 4.162 26 C -0.120 4.120 27 C -0.212 4.212 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.394 0.606 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.277 0.723 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.574 -6.667 -5.166 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C -0.023 4.023 4 C 0.115 3.885 5 C -0.194 4.194 6 O -0.344 6.344 7 C 0.282 3.718 8 O -0.406 6.406 9 O -0.248 6.248 10 C 0.002 3.998 11 C 0.267 3.733 12 O -0.453 6.453 13 N -0.097 5.097 14 C -0.522 4.522 15 H 0.124 0.876 16 C -0.185 4.185 17 N -0.502 5.502 18 Si 0.806 3.194 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.185 1.185 22 C 0.061 3.939 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.181 4.181 26 C -0.139 4.139 27 C -0.232 4.232 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.244 0.756 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.152 0.848 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.116 -7.328 -5.423 12.892 hybrid contribution -0.724 1.932 0.590 2.146 sum -9.840 -5.396 -4.832 12.218 Atomic orbital electron populations 1.23014 0.78806 1.04296 1.01082 1.87867 1.21689 1.25913 1.95630 1.22834 0.90174 0.86089 1.03253 1.21092 0.92493 0.83776 0.91138 1.21793 1.02853 1.02102 0.92694 1.86653 1.81142 1.50963 1.15683 1.25154 0.79582 0.93055 0.74038 1.90670 1.62314 1.44066 1.43501 1.86586 1.31715 1.32381 1.74070 1.22455 0.92934 0.80940 1.03461 1.20673 0.87557 0.83710 0.81360 1.90253 1.67689 1.33829 1.53488 1.41090 1.08319 1.05820 1.54436 1.19781 1.36228 0.90407 1.05748 0.87575 1.26325 0.94736 1.03416 0.94012 1.70106 1.40137 1.35669 1.04321 0.85131 0.79473 0.76523 0.78298 1.18497 1.20556 1.18453 1.18409 0.84056 0.94652 0.96758 1.20823 0.93992 0.96593 1.01948 1.21119 0.94225 0.98907 0.99955 1.21217 1.00805 0.92430 1.03628 1.21213 0.93841 0.98892 0.99947 1.22674 0.97603 0.99836 1.03095 0.93216 0.92843 0.87785 0.91591 0.90169 0.91492 0.88203 0.89059 0.75596 0.87767 0.87491 0.91334 0.87039 0.84794 0.83980 0.84749 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.55 16 2 O -0.39 -7.82 9.92 -139.78 -1.39 -9.21 16 3 C 0.05 1.11 4.56 71.98 0.33 1.44 16 4 C 0.16 3.98 1.13 -11.54 -0.01 3.97 16 5 C -0.14 -3.07 8.68 71.98 0.62 -2.45 16 6 O -0.54 -14.26 12.67 -127.22 -1.61 -15.87 16 7 C 0.44 13.84 6.80 71.23 0.48 14.33 16 8 O -0.52 -17.42 15.84 21.96 0.35 -17.07 16 9 O -0.33 -12.63 9.51 -42.77 -0.41 -13.04 16 10 C 0.08 3.17 4.71 71.24 0.34 3.51 16 11 C 0.48 23.18 7.65 87.66 0.67 23.85 16 12 O -0.57 -29.70 12.92 15.71 0.20 -29.49 16 13 N -0.39 -19.71 2.70 -458.89 -1.24 -20.95 16 14 C -0.40 -19.20 7.65 84.02 0.64 -18.55 16 15 H 0.11 4.76 7.55 -2.91 -0.02 4.74 16 16 C 0.02 1.08 3.62 84.91 0.31 1.38 16 17 N -0.87 -44.95 11.12 21.65 0.24 -44.71 16 18 Si 0.98 37.18 29.56 68.60 2.03 39.21 16 19 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 20 H -0.28 -10.57 7.11 99.48 0.71 -9.87 16 21 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 22 C 0.16 8.04 5.72 38.22 0.22 8.26 16 23 C -0.11 -5.36 7.56 22.41 0.17 -5.19 16 24 C -0.12 -4.95 10.04 22.25 0.22 -4.73 16 25 C -0.16 -6.00 10.04 22.30 0.22 -5.78 16 26 C -0.12 -4.89 10.04 22.25 0.22 -4.67 16 27 C -0.21 -10.36 9.04 22.41 0.20 -10.16 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.56 7.87 -2.38 -0.02 1.54 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 2.04 7.68 -2.39 -0.02 2.02 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.39 8.12 9.04 -74.06 -0.67 7.45 16 37 H 0.10 4.20 7.88 -2.39 -0.02 4.18 16 38 H 0.11 3.97 8.08 -2.39 -0.02 3.95 16 39 H 0.28 13.56 8.32 -92.71 -0.77 12.79 16 40 H 0.11 5.48 5.69 -2.91 -0.02 5.46 16 41 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 42 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 43 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 44 H 0.16 8.06 4.56 -60.07 -0.27 7.79 16 Total: -1.00 -66.32 373.52 4.17 -62.15 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: 0.11 Total: 42.22 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.89 Total: 6.76 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -1.00 Total: -65.66 kcal Atomic # 8 Polarization: -81.83 SS G_CDS: -2.85 Total: -84.69 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -66.32 4.17 -62.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745318661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.827 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds