Wall clock time and date at job start Tue Mar 31 2020 20:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00203 * 2 1 4 4 C 1.53001 * 109.47424 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47321 * 305.00528 * 4 3 2 6 6 O 1.42907 * 109.46709 * 65.00212 * 4 3 2 7 7 C 1.50692 * 109.47289 * 184.99987 * 4 3 2 8 8 O 1.20831 * 119.99969 * 25.00232 * 7 4 3 9 9 O 1.34228 * 120.00341 * 205.00592 * 7 4 3 10 10 C 1.45200 * 117.00520 * 185.08467 * 9 7 4 11 11 C 1.50697 * 109.47537 * 184.90887 * 10 9 7 12 12 O 1.21277 * 119.99690 * 355.00398 * 11 10 9 13 13 N 1.34769 * 120.00176 * 174.99618 * 11 10 9 14 14 C 1.37139 * 120.00008 * 3.38353 * 13 11 10 15 15 H 1.08003 * 120.00294 * 305.54779 * 14 13 11 16 16 C 1.38896 * 120.00327 * 125.54590 * 14 13 11 17 17 N 1.31414 * 120.00312 * 181.40619 * 16 14 13 18 18 Si 1.86800 * 119.99589 * 1.40450 * 16 14 13 19 19 H 1.48499 * 109.47248 * 95.25658 * 18 16 14 20 20 H 1.48503 * 109.47228 * 215.25511 * 18 16 14 21 21 H 1.48503 * 109.47494 * 335.25822 * 18 16 14 22 22 C 1.39785 * 120.00278 * 183.37661 * 13 11 10 23 23 C 1.38958 * 120.08276 * 171.68140 * 22 13 11 24 24 C 1.38083 * 119.92779 * 179.97438 * 23 22 13 25 25 C 1.38310 * 120.07222 * 359.97438 * 24 23 22 26 26 C 1.38303 * 120.16063 * 0.02562 * 25 24 23 27 27 C 1.38080 * 120.07621 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.46958 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46973 * 300.00246 * 1 2 3 30 30 H 1.09000 * 109.47030 * 60.00135 * 1 2 3 31 31 H 1.09003 * 109.47054 * 59.99707 * 3 2 1 32 32 H 1.09001 * 109.47388 * 300.00364 * 3 2 1 33 33 H 1.09004 * 109.46727 * 299.99632 * 5 4 3 34 34 H 1.09004 * 109.47619 * 59.99069 * 5 4 3 35 35 H 1.08997 * 109.47153 * 179.97438 * 5 4 3 36 36 H 0.96696 * 114.00141 * 59.99898 * 6 4 3 37 37 H 1.08998 * 109.46937 * 64.90809 * 10 9 7 38 38 H 1.09003 * 109.46944 * 304.91016 * 10 9 7 39 39 H 0.96997 * 120.00195 * 179.97438 * 17 16 14 40 40 H 1.08002 * 120.03940 * 359.70778 * 23 22 13 41 41 H 1.07991 * 119.96600 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.91556 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.96251 * 180.02562 * 26 25 24 44 44 H 1.08002 * 120.04211 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9781 0.3197 1.1825 6 8 3.9658 0.5792 -1.2202 7 6 4.1480 2.5559 0.1245 8 8 3.5238 3.4519 0.6418 9 8 5.3868 2.7821 -0.3400 10 6 5.9569 4.0932 -0.0863 11 6 7.2906 4.2038 -0.7790 12 8 7.7605 3.2408 -1.3470 13 7 7.9611 5.3728 -0.7675 14 6 7.4635 6.4418 -0.0672 15 1 6.4579 6.7888 -0.2539 16 6 8.2527 7.0783 0.8821 17 7 7.7665 8.0851 1.5727 18 14 10.0052 6.5031 1.1773 19 1 10.9397 7.3291 0.3713 20 1 10.3366 6.6442 2.6180 21 1 10.1328 5.0787 0.7772 22 6 9.1639 5.4957 -1.4691 23 6 9.7680 6.7399 -1.6033 24 6 10.9563 6.8576 -2.2966 25 6 11.5456 5.7387 -2.8567 26 6 10.9472 4.4988 -2.7253 27 6 9.7589 4.3738 -2.0333 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.6499 0.7815 2.1137 34 1 3.5351 -0.6722 1.0930 35 1 5.0647 0.2333 1.1826 36 1 3.7191 1.0745 -2.0132 37 1 6.0924 4.2290 0.9867 38 1 5.2845 4.8617 -0.4677 39 1 8.3175 8.5294 2.2360 40 1 9.3064 7.6147 -1.1695 41 1 11.4261 7.8243 -2.4016 42 1 12.4749 5.8337 -3.3988 43 1 11.4104 3.6271 -3.1636 44 1 9.2919 3.4053 -1.9313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745318665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:43 Heat of formation + Delta-G solvation = -150.887729 kcal Electronic energy + Delta-G solvation = -29705.867652 eV Core-core repulsion = 25397.433611 eV Total energy + Delta-G solvation = -4308.434041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86900 -40.12113 -38.58488 -37.65311 -36.68810 -36.27246 -35.24311 -32.34058 -31.94699 -30.22655 -30.01532 -27.91268 -27.59589 -26.12466 -25.36873 -23.74594 -22.08047 -21.46450 -20.38066 -19.63573 -18.66296 -18.33005 -16.87210 -16.76443 -16.59482 -16.32278 -16.12640 -15.88401 -15.77230 -15.52025 -14.73695 -14.46312 -14.17098 -13.98067 -13.84165 -13.38917 -13.23926 -12.96025 -12.88743 -12.63662 -12.57402 -12.51431 -12.30208 -12.11617 -12.02178 -11.88919 -11.62003 -11.43149 -11.08344 -10.81566 -10.74137 -10.49226 -10.37848 -10.17208 -10.13505 -9.91127 -9.50718 -9.10477 -8.54412 -8.10733 -7.18932 -6.66414 -4.65765 1.93818 2.04962 2.08696 2.27740 3.07990 3.18017 3.27478 3.34025 3.51357 3.91032 3.99074 4.06088 4.35950 4.50194 4.53839 4.73414 4.81362 5.02347 5.04677 5.18298 5.25226 5.26850 5.37168 5.55385 5.57360 5.60254 5.64544 5.65020 5.75651 5.83611 6.02540 6.21147 6.30859 6.45225 6.47461 6.72237 6.74241 7.08597 7.14604 7.21881 7.27151 7.27636 7.61583 7.72704 7.83959 8.05217 8.62044 8.90917 9.17822 10.35151 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.003047 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.028848 B = 9186.209129 C =10161.428449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.046 3.954 4 C 0.156 3.844 5 C -0.137 4.137 6 O -0.525 6.525 7 C 0.437 3.563 8 O -0.499 6.499 9 O -0.321 6.321 10 C 0.068 3.932 11 C 0.501 3.499 12 O -0.537 6.537 13 N -0.402 5.402 14 C -0.382 4.382 15 H 0.111 0.889 16 C 0.085 3.915 17 N -0.851 5.851 18 Si 0.873 3.127 19 H -0.252 1.252 20 H -0.289 1.289 21 H -0.256 1.256 22 C 0.159 3.841 23 C -0.158 4.158 24 C -0.105 4.105 25 C -0.169 4.169 26 C -0.108 4.108 27 C -0.183 4.183 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.383 0.617 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.281 0.719 40 H 0.139 0.861 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 -10.008 -2.675 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C -0.031 4.031 4 C 0.113 3.887 5 C -0.194 4.194 6 O -0.331 6.331 7 C 0.278 3.722 8 O -0.388 6.388 9 O -0.236 6.236 10 C -0.009 4.009 11 C 0.292 3.708 12 O -0.418 6.418 13 N -0.113 5.113 14 C -0.507 4.507 15 H 0.129 0.871 16 C -0.126 4.126 17 N -0.483 5.483 18 Si 0.699 3.301 19 H -0.177 1.177 20 H -0.216 1.216 21 H -0.180 1.180 22 C 0.063 3.937 23 C -0.179 4.179 24 C -0.124 4.124 25 C -0.188 4.188 26 C -0.127 4.127 27 C -0.202 4.202 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.231 0.769 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.157 0.843 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.378 -10.635 -2.204 13.130 hybrid contribution 0.412 1.210 0.001 1.278 sum -6.966 -9.425 -2.203 11.925 Atomic orbital electron populations 1.22789 0.80569 1.02962 1.00232 1.87888 1.19823 1.26294 1.95492 1.22959 0.91807 0.85667 1.02712 1.20933 0.91317 0.86823 0.89623 1.21725 1.03445 1.00579 0.93694 1.86679 1.80734 1.51352 1.14303 1.24436 0.80814 0.91237 0.75731 1.90711 1.62367 1.45337 1.40338 1.86538 1.29676 1.36520 1.70834 1.22668 0.93760 0.81643 1.02781 1.20173 0.86702 0.82336 0.81588 1.90279 1.68115 1.37594 1.45856 1.41229 1.18122 1.10448 1.41501 1.19081 1.02887 1.10245 1.18534 0.87121 1.25489 0.99245 0.94499 0.93353 1.69641 1.37626 1.19619 1.21459 0.86957 0.83974 0.81737 0.77466 1.17699 1.21587 1.18013 1.18439 0.88240 0.93939 0.93109 1.21024 0.96885 0.97401 1.02566 1.20827 0.95430 0.98159 0.97936 1.20943 1.00773 0.93361 1.03743 1.21030 0.95623 0.96821 0.99195 1.22770 0.96400 1.01397 0.99635 0.89283 0.93833 0.93942 0.90539 0.92221 0.90458 0.89074 0.90403 0.76924 0.87392 0.87976 0.90819 0.84292 0.86749 0.87234 0.86795 0.80452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.00 9.79 -40.08 -0.39 -4.39 16 3 C 0.05 0.50 4.70 37.16 0.17 0.67 16 4 C 0.16 1.98 1.15 -91.78 -0.11 1.88 16 5 C -0.14 -1.60 8.63 37.15 0.32 -1.27 16 6 O -0.53 -6.76 12.74 -55.81 -0.71 -7.47 16 7 C 0.44 6.85 6.79 36.00 0.24 7.09 16 8 O -0.50 -8.66 15.64 -18.75 -0.29 -8.95 16 9 O -0.32 -5.82 9.51 -48.33 -0.46 -6.28 16 10 C 0.07 1.32 4.87 36.00 0.18 1.50 16 11 C 0.50 11.26 7.65 -10.99 -0.08 11.18 16 12 O -0.54 -12.59 12.92 -14.05 -0.18 -12.77 16 13 N -0.40 -9.52 2.30 -58.98 -0.14 -9.66 16 14 C -0.38 -9.46 8.01 -14.93 -0.12 -9.58 16 15 H 0.11 2.84 7.70 -52.48 -0.40 2.44 16 16 C 0.09 2.16 4.61 -17.49 -0.08 2.08 16 17 N -0.85 -22.36 13.96 55.49 0.77 -21.59 16 18 Si 0.87 20.49 23.84 -169.99 -4.05 16.43 16 19 H -0.25 -5.68 6.14 56.52 0.35 -5.33 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.26 -6.33 6.48 56.52 0.37 -5.97 16 22 C 0.16 3.67 4.12 -83.70 -0.35 3.32 16 23 C -0.16 -3.48 5.57 -39.37 -0.22 -3.70 16 24 C -0.10 -1.99 9.76 -39.61 -0.39 -2.38 16 25 C -0.17 -2.98 10.04 -39.53 -0.40 -3.38 16 26 C -0.11 -2.01 10.04 -39.62 -0.40 -2.41 16 27 C -0.18 -3.97 9.03 -39.37 -0.36 -4.33 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.82 7.69 -51.93 -0.40 0.43 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.99 7.56 -51.93 -0.39 0.60 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.38 3.66 9.04 45.56 0.41 4.08 16 37 H 0.11 2.10 8.14 -51.93 -0.42 1.67 16 38 H 0.10 1.94 7.57 -51.93 -0.39 1.55 16 39 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.14 3.20 5.70 -52.49 -0.30 2.90 16 41 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.18 4.02 4.58 -55.99 -0.26 3.77 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -30.39 365.73 -5.59 -35.98 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.19 Total: 11.16 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.46 Total: 2.01 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.64 Total: -31.24 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -2.04 Total: -39.85 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.05 Total: 16.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.39 -5.59 -35.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745318665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.911 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds