Wall clock time and date at job start Tue Mar 31 2020 20:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46802 * 2 1 4 4 O 1.42902 * 109.47163 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46772 * 240.00402 * 2 1 3 6 6 O 1.42901 * 109.47393 * 59.99921 * 5 2 1 7 7 C 1.50695 * 109.47042 * 120.00072 * 2 1 3 8 8 O 1.20829 * 119.99507 * 120.00027 * 7 2 1 9 9 O 1.34221 * 120.00534 * 299.99898 * 7 2 1 10 10 C 1.45200 * 117.00344 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47426 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99951 * 354.93908 * 11 10 9 13 13 N 1.34770 * 120.00462 * 174.94275 * 11 10 9 14 14 C 1.37148 * 119.99684 * 5.67552 * 13 11 10 15 15 H 1.07991 * 119.99849 * 55.67002 * 14 13 11 16 16 C 1.38895 * 119.99574 * 235.66975 * 14 13 11 17 17 N 1.31415 * 120.00325 * 9.24657 * 16 14 13 18 18 Si 1.86803 * 119.99354 * 189.24263 * 16 14 13 19 19 H 1.48504 * 109.46985 * 60.00699 * 18 16 14 20 20 H 1.48500 * 109.46757 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47564 * 300.00388 * 18 16 14 22 22 C 1.39787 * 120.00306 * 185.67775 * 13 11 10 23 23 C 1.38961 * 120.07792 * 175.18913 * 22 13 11 24 24 C 1.38082 * 119.92435 * 179.97438 * 23 22 13 25 25 C 1.38311 * 120.07409 * 359.97438 * 24 23 22 26 26 C 1.38302 * 120.15721 * 0.02562 * 25 24 23 27 27 C 1.38085 * 120.08210 * 359.97438 * 26 25 24 28 28 H 1.09008 * 109.46900 * 299.99738 * 1 2 3 29 29 H 1.08996 * 109.47523 * 59.99657 * 1 2 3 30 30 H 1.09001 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47362 * 300.00442 * 3 2 1 32 32 H 1.09008 * 109.47179 * 60.00433 * 3 2 1 33 33 H 0.96690 * 114.00209 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.46580 * 179.97438 * 5 2 1 35 35 H 1.09006 * 109.47275 * 299.99771 * 5 2 1 36 36 H 0.96694 * 114.00375 * 180.02562 * 6 5 2 37 37 H 1.09000 * 109.46805 * 60.00461 * 10 9 7 38 38 H 1.08994 * 109.47175 * 300.00102 * 10 9 7 39 39 H 0.96994 * 119.99788 * 184.97940 * 17 16 14 40 40 H 1.08007 * 120.03887 * 359.70095 * 23 22 13 41 41 H 1.08001 * 119.96344 * 179.97438 * 24 23 22 42 42 H 1.07996 * 119.92050 * 179.97438 * 25 24 23 43 43 H 1.08006 * 119.96364 * 180.02562 * 26 25 24 44 44 H 1.07990 * 120.04576 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 2.0399 -0.7212 -1.2493 6 8 1.5636 -0.0475 -2.4160 7 6 2.0323 -0.7104 1.2304 8 8 2.7270 -1.6928 1.1194 9 8 1.7082 -0.2519 2.4495 10 6 2.2268 -0.9865 3.5896 11 6 1.7620 -0.3301 4.8639 12 8 1.1401 0.7101 4.8183 13 7 2.0374 -0.8988 6.0543 14 6 2.8386 -2.0103 6.1142 15 1 3.8294 -1.9855 5.6853 16 6 2.3756 -3.1679 6.7265 17 7 1.1150 -3.2622 7.0856 18 14 3.5450 -4.5906 7.0394 19 1 4.6517 -4.1372 7.9197 20 1 2.8101 -5.6990 7.7002 21 1 4.1028 -5.0663 5.7480 22 6 1.5065 -0.3559 7.2279 23 6 1.7063 -0.9971 8.4445 24 6 1.1809 -0.4577 9.6019 25 6 0.4568 0.7197 9.5514 26 6 0.2560 1.3605 8.3424 27 6 0.7785 0.8269 7.1809 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 3.8622 2.3259 0.0010 34 1 3.1300 -0.7207 -1.2495 35 1 1.6766 -1.7489 -1.2493 36 1 1.8485 -0.4511 -3.2472 37 1 3.3164 -0.9862 3.5568 38 1 1.8626 -2.0133 3.5564 39 1 0.8077 -4.0397 7.5773 40 1 2.2682 -1.9186 8.4840 41 1 1.3354 -0.9557 10.5477 42 1 0.0466 1.1391 10.4581 43 1 -0.3096 2.2800 8.3066 44 1 0.6210 1.3275 6.2372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759839691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:00 Heat of formation + Delta-G solvation = -166.858671 kcal Electronic energy + Delta-G solvation = -29968.829268 eV Core-core repulsion = 25659.702675 eV Total energy + Delta-G solvation = -4309.126593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.66631 -39.72188 -38.06938 -37.22212 -36.35386 -35.95603 -35.09824 -33.73383 -32.06717 -29.81668 -29.58613 -27.43643 -26.69304 -25.94406 -25.26729 -23.37417 -21.75387 -21.18781 -19.65254 -19.46573 -18.01799 -17.96330 -17.42112 -16.89777 -16.31606 -16.22408 -15.75343 -15.57861 -15.26963 -15.09320 -14.84336 -14.40324 -14.21602 -13.76695 -13.48782 -13.19124 -13.07236 -12.87774 -12.69411 -12.48559 -12.37477 -12.29083 -11.98397 -11.85711 -11.65881 -11.54056 -11.30891 -11.14933 -10.89054 -10.82393 -10.55450 -10.32198 -10.29138 -10.13202 -10.09150 -9.92249 -9.32560 -8.81833 -8.23887 -7.84558 -6.96939 -6.40784 -4.66437 2.33834 2.40977 2.51527 2.58943 3.02262 3.09514 3.10538 3.59546 3.86454 3.94242 4.21171 4.27903 4.61795 4.65957 4.72673 5.04403 5.06302 5.12805 5.38577 5.44157 5.51460 5.55070 5.62720 5.71551 5.78834 5.80624 5.83463 5.91387 6.00184 6.11091 6.13241 6.64872 6.67077 6.72109 6.83406 7.07806 7.16509 7.38923 7.45175 7.50443 7.55414 7.61930 7.69107 7.95665 7.98291 8.35148 8.74166 9.09637 9.47005 10.38134 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.003483 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.265092 B = 8036.041608 C = 9483.888603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 C 0.089 3.911 4 O -0.572 6.572 5 C 0.100 3.900 6 O -0.570 6.570 7 C 0.479 3.521 8 O -0.507 6.507 9 O -0.332 6.332 10 C 0.073 3.927 11 C 0.497 3.503 12 O -0.548 6.548 13 N -0.377 5.377 14 C -0.381 4.381 15 H 0.096 0.904 16 C 0.059 3.941 17 N -0.838 5.838 18 Si 0.915 3.085 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.266 1.266 22 C 0.184 3.816 23 C -0.103 4.103 24 C -0.123 4.123 25 C -0.171 4.171 26 C -0.120 4.120 27 C -0.191 4.191 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.383 0.617 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.383 0.617 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.277 0.723 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 5.025 -11.118 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 C 0.011 3.989 4 O -0.378 6.378 5 C 0.022 3.978 6 O -0.376 6.376 7 C 0.321 3.679 8 O -0.395 6.395 9 O -0.246 6.246 10 C -0.003 4.003 11 C 0.287 3.713 12 O -0.431 6.431 13 N -0.086 5.086 14 C -0.508 4.508 15 H 0.113 0.887 16 C -0.151 4.151 17 N -0.469 5.469 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.190 1.190 22 C 0.088 3.912 23 C -0.124 4.124 24 C -0.142 4.142 25 C -0.190 4.190 26 C -0.139 4.139 27 C -0.210 4.210 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.231 0.769 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.150 0.850 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.163 4.756 -10.722 11.730 hybrid contribution 0.895 -1.002 0.159 1.353 sum 1.059 3.754 -10.563 11.260 Atomic orbital electron populations 1.21783 0.90130 1.03649 1.04170 1.20400 0.98477 0.95762 0.90077 1.22122 0.81389 0.93671 1.01707 1.86453 1.19415 1.34099 1.97806 1.21809 0.98699 0.93908 0.83389 1.86332 1.77649 1.57596 1.16005 1.23016 0.77419 0.82528 0.84904 1.90653 1.35438 1.26065 1.87364 1.86421 1.69006 1.55058 1.14163 1.22583 1.00021 0.96031 0.81669 1.20222 0.80653 0.85405 0.84984 1.90213 1.42383 1.24257 1.86234 1.40774 1.41450 1.24790 1.01552 1.19373 0.97827 0.88246 1.45359 0.88687 1.25631 0.95589 0.98296 0.95631 1.70016 1.13500 1.30281 1.33099 0.86177 0.80193 0.80137 0.79528 1.19145 1.20404 1.19031 1.18233 0.94656 0.91662 0.86679 1.21028 1.01234 0.99673 0.90462 1.20778 0.99804 0.96331 0.97331 1.20811 1.03455 0.97628 0.97145 1.20872 1.00697 0.99532 0.92789 1.22787 0.99971 0.96814 1.01462 0.90451 0.90082 0.91467 0.91374 0.91750 0.76941 0.91653 0.92648 0.76943 0.88734 0.87787 0.91211 0.85018 0.87667 0.88083 0.87608 0.80848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.26 37.16 0.31 -1.34 16 2 C -0.05 -0.62 0.63 -155.66 -0.10 -0.72 16 3 C 0.09 1.07 5.71 37.16 0.21 1.28 16 4 O -0.57 -7.11 12.61 -35.23 -0.44 -7.55 16 5 C 0.10 1.20 5.06 37.16 0.19 1.39 16 6 O -0.57 -5.48 12.31 -35.23 -0.43 -5.91 16 7 C 0.48 8.41 6.20 36.00 0.22 8.63 16 8 O -0.51 -9.92 15.73 -18.75 -0.29 -10.22 16 9 O -0.33 -6.46 9.56 -45.86 -0.44 -6.90 16 10 C 0.07 1.53 4.77 36.01 0.17 1.71 16 11 C 0.50 11.86 7.65 -10.99 -0.08 11.77 16 12 O -0.55 -13.58 12.90 -14.05 -0.18 -13.76 16 13 N -0.38 -9.39 2.62 -58.98 -0.15 -9.55 16 14 C -0.38 -9.26 7.61 -14.93 -0.11 -9.38 16 15 H 0.10 2.19 7.85 -52.49 -0.41 1.78 16 16 C 0.06 1.42 3.49 -17.49 -0.06 1.36 16 17 N -0.84 -21.34 11.39 55.49 0.63 -20.70 16 18 Si 0.92 18.48 29.57 -169.99 -5.03 13.45 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 C 0.18 4.58 6.05 -83.70 -0.51 4.08 16 23 C -0.10 -2.44 7.87 -39.37 -0.31 -2.75 16 24 C -0.12 -2.56 10.04 -39.61 -0.40 -2.96 16 25 C -0.17 -3.35 10.04 -39.53 -0.40 -3.75 16 26 C -0.12 -2.47 10.04 -39.61 -0.40 -2.86 16 27 C -0.19 -4.49 9.06 -39.37 -0.36 -4.84 16 28 H 0.08 0.95 8.11 -51.92 -0.42 0.53 16 29 H 0.08 0.82 7.68 -51.93 -0.40 0.42 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 32 H 0.06 0.80 8.11 -51.92 -0.42 0.38 16 33 H 0.38 2.92 9.12 45.56 0.42 3.33 16 34 H 0.07 0.86 7.64 -51.93 -0.40 0.46 16 35 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.38 1.97 9.12 45.56 0.42 2.38 16 37 H 0.09 1.89 8.13 -51.93 -0.42 1.46 16 38 H 0.10 2.23 8.04 -51.93 -0.42 1.81 16 39 H 0.28 6.69 8.32 -40.82 -0.34 6.35 16 40 H 0.13 3.21 5.15 -52.48 -0.27 2.94 16 41 H 0.11 1.89 8.06 -52.49 -0.42 1.46 16 42 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.11 1.86 8.06 -52.48 -0.42 1.43 16 44 H 0.18 4.23 4.50 -56.38 -0.25 3.98 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -31.57 370.36 -6.61 -38.18 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -4.23 Total: 15.78 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.62 Total: 1.61 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.48 Total: -30.25 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -1.79 Total: -44.35 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.57 -6.61 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759839691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.678 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds