Wall clock time and date at job start Tue Mar 31 2020 20:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.50845 * 2 1 4 4 C 1.53140 * 109.51410 * 120.09916 * 2 1 3 5 5 C 1.53096 * 108.98802 * 190.83380 * 4 2 1 6 6 C 1.51713 * 108.74972 * 309.90362 * 5 4 2 7 7 S 1.70755 * 124.55777 * 196.56311 * 6 5 4 8 8 C 1.75603 * 91.77603 * 179.97438 * 7 6 5 9 9 C 1.46589 * 125.45674 * 180.02562 * 8 7 6 10 10 O 1.21694 * 120.00310 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99737 * 359.97438 * 9 8 7 12 12 N 1.40100 * 120.00113 * 179.97438 * 11 9 8 13 13 C 1.34778 * 120.00113 * 180.02562 * 12 11 9 14 14 O 1.21586 * 119.99692 * 180.02562 * 13 12 11 15 15 N 1.34777 * 119.99897 * 0.02562 * 13 12 11 16 16 C 1.46506 * 119.99742 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.46622 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00790 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99700 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99951 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00055 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46788 * 60.00372 * 21 19 17 23 23 H 1.48494 * 109.47095 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46970 * 300.00323 * 21 19 17 25 25 C 1.36112 * 109.09115 * 0.02562 * 8 7 6 26 26 C 1.35237 * 124.33363 * 16.56181 * 6 5 4 27 27 C 1.52336 * 122.99689 * 0.02562 * 26 6 5 28 28 H 1.09000 * 109.46986 * 299.89612 * 1 2 3 29 29 H 1.08996 * 109.47227 * 59.89910 * 1 2 3 30 30 H 1.09006 * 109.46624 * 179.90354 * 1 2 3 31 31 H 1.09000 * 109.55315 * 70.98394 * 4 2 1 32 32 H 1.08998 * 109.55328 * 310.68308 * 4 2 1 33 33 H 1.09000 * 109.59317 * 69.68310 * 5 4 2 34 34 H 1.09001 * 109.59013 * 190.12663 * 5 4 2 35 35 H 0.97007 * 119.99958 * 359.97438 * 11 9 8 36 36 H 0.96997 * 119.99732 * 0.02562 * 12 11 9 37 37 H 0.96996 * 120.00250 * 0.02562 * 15 13 12 38 38 H 1.09000 * 109.46847 * 300.00199 * 16 15 13 39 39 H 1.09000 * 109.46920 * 60.00552 * 16 15 13 40 40 H 0.96996 * 119.99854 * 180.02562 * 20 19 17 41 41 H 1.07997 * 122.95386 * 179.97438 * 25 8 7 42 42 H 1.08994 * 109.58635 * 257.53947 * 27 26 6 43 43 H 1.09000 * 109.57829 * 137.13709 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0416 -0.7239 1.2488 5 6 3.5481 -0.4857 1.3806 6 6 4.2098 -0.8016 0.0523 7 16 5.8835 -1.0672 -0.1571 8 6 5.6812 -1.3322 -1.8812 9 6 6.7584 -1.6412 -2.8262 10 8 6.5050 -1.8070 -4.0048 11 7 8.0296 -1.7418 -2.3896 12 7 9.0591 -2.0377 -3.2925 13 6 10.3301 -2.1389 -2.8558 14 8 11.2236 -2.3952 -3.6396 15 7 10.6107 -1.9558 -1.5504 16 6 11.9923 -2.0663 -1.0756 17 6 12.0338 -1.8201 0.4105 18 1 11.1224 -1.6035 0.9478 19 6 13.2355 -1.8725 1.0846 20 7 14.3454 -2.1368 0.4305 21 14 13.2872 -1.5667 2.9267 22 1 12.4432 -2.5731 3.6194 23 1 14.6876 -1.6788 3.4080 24 1 12.7721 -0.2044 3.2170 25 6 4.3641 -1.2046 -2.1997 26 6 3.5487 -0.9097 -1.1225 27 6 2.0420 -0.7230 -1.2468 28 1 -0.3633 0.5122 0.8909 29 1 -0.3633 0.5154 -0.8890 30 1 -0.3633 -1.0277 -0.0017 31 1 1.8480 -1.7925 1.1560 32 1 1.5323 -0.3346 2.1304 33 1 3.7320 0.5564 1.6417 34 1 3.9546 -1.1361 2.1551 35 1 8.2316 -1.6094 -1.4501 36 1 8.8570 -2.1698 -4.2320 37 1 9.8979 -1.7517 -0.9250 38 1 12.3708 -3.0660 -1.2888 39 1 12.6114 -1.3272 -1.5841 40 1 15.1907 -2.1740 0.9048 41 1 3.9887 -1.3233 -3.2054 42 1 1.5587 -1.6965 -1.3283 43 1 1.8196 -0.1274 -2.1322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787352311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:11 Heat of formation + Delta-G solvation = -19.379768 kcal Electronic energy + Delta-G solvation = -25669.066263 eV Core-core repulsion = 21841.380457 eV Total energy + Delta-G solvation = -3827.685806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.37818 -39.73601 -38.80800 -36.04994 -35.41441 -34.34487 -32.45916 -32.33194 -31.28194 -29.49035 -27.25619 -27.05571 -24.76812 -23.35158 -23.01241 -21.69524 -20.62790 -20.29356 -19.32882 -18.46329 -18.29165 -16.99253 -16.40718 -15.80338 -15.62110 -15.32500 -15.07416 -14.89539 -14.72846 -14.60692 -14.55650 -14.18216 -13.92080 -13.47243 -13.23127 -13.08523 -12.79384 -12.55152 -12.32532 -12.18213 -12.04887 -11.72870 -11.48517 -11.19388 -11.08129 -11.06018 -10.96850 -10.90326 -10.79313 -10.53928 -10.34492 -9.76908 -9.47652 -8.98791 -8.83839 -8.69028 -8.35377 -7.89012 -6.21526 -4.29250 0.20749 1.12110 1.56068 1.91035 2.00090 2.91216 3.21640 3.26362 3.28016 3.63624 3.66868 4.10780 4.19689 4.29345 4.33538 4.42281 4.61781 4.68211 4.94951 4.99686 5.08542 5.14684 5.21399 5.21839 5.26628 5.35573 5.38088 5.42949 5.52136 5.56398 5.66780 5.74483 5.93877 5.98429 6.12420 6.47780 6.64500 7.23436 7.32996 7.41420 7.46007 7.58011 7.87164 8.02371 8.60515 8.77078 9.03067 9.37136 10.88495 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.002662 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.232264 B =10515.152097 C =12651.197718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.052 4.052 6 C -0.189 4.189 7 S 0.208 5.792 8 C -0.265 4.265 9 C 0.594 3.406 10 O -0.530 6.530 11 N -0.519 5.519 12 N -0.539 5.539 13 C 0.702 3.298 14 O -0.575 6.575 15 N -0.725 5.725 16 C 0.264 3.736 17 C -0.546 4.546 18 H 0.062 0.938 19 C 0.065 3.935 20 N -0.883 5.883 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.040 4.040 26 C -0.121 4.121 27 C -0.050 4.050 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.419 0.581 36 H 0.437 0.563 37 H 0.380 0.620 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.267 0.733 41 H 0.153 0.847 42 H 0.078 0.922 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.118 4.579 3.148 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.091 4.091 6 C -0.309 4.309 7 S 0.479 5.521 8 C -0.387 4.387 9 C 0.380 3.620 10 O -0.407 6.407 11 N -0.269 5.269 12 N -0.299 5.299 13 C 0.401 3.599 14 O -0.449 6.449 15 N -0.379 5.379 16 C 0.143 3.857 17 C -0.584 4.584 18 H 0.080 0.920 19 C -0.139 4.139 20 N -0.520 5.520 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.073 4.073 26 C -0.133 4.133 27 C -0.089 4.089 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.260 0.740 36 H 0.282 0.718 37 H 0.213 0.787 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.170 0.830 42 H 0.096 0.904 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -26.912 4.237 2.912 27.399 hybrid contribution -1.356 0.266 0.433 1.448 sum -28.268 4.503 3.344 28.819 Atomic orbital electron populations 1.21830 0.94701 1.02020 1.01929 1.21155 0.95663 0.99903 0.94487 0.90742 1.21637 0.93932 1.01296 0.98050 1.20436 0.95175 1.02403 0.91086 1.24694 0.98243 1.07747 1.00186 1.83192 1.03708 1.64735 1.00467 1.23879 0.97616 1.19401 0.97802 1.16815 0.79985 0.77658 0.87558 1.90847 1.82408 1.51226 1.16186 1.44629 1.01704 1.72591 1.08002 1.44818 0.98496 1.78993 1.07556 1.15995 0.80428 0.79129 0.84354 1.90991 1.41710 1.57140 1.55036 1.45829 1.13235 1.73700 1.05127 1.19115 0.74600 0.97975 0.93989 1.21127 0.94111 1.51057 0.92146 0.91960 1.24938 0.95227 0.94674 0.99055 1.69959 0.98586 1.47036 1.36406 0.86460 0.77314 0.78838 0.84217 1.20020 1.21030 1.20020 1.20550 0.90283 0.95937 1.00575 1.19476 0.97343 1.05464 0.91046 1.20596 0.88876 1.01063 0.98373 0.92483 0.92476 0.92509 0.91282 0.90905 0.89718 0.89940 0.73956 0.71809 0.78705 0.95241 0.95232 0.92278 0.82978 0.90380 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.17 37.16 0.34 -0.28 16 2 C -0.09 -0.49 2.68 -90.57 -0.24 -0.74 16 3 H 0.07 0.43 8.10 -51.92 -0.42 0.01 16 4 C -0.11 -0.56 5.24 -26.61 -0.14 -0.70 16 5 C -0.05 -0.32 6.22 -27.33 -0.17 -0.49 16 6 C -0.19 -1.58 6.15 -34.88 -0.21 -1.79 16 7 S 0.21 1.93 22.09 -107.50 -2.37 -0.44 16 8 C -0.27 -3.05 6.43 -36.98 -0.24 -3.28 16 9 C 0.59 8.39 7.90 -12.89 -0.10 8.29 16 10 O -0.53 -8.88 16.67 5.19 0.09 -8.79 16 11 N -0.52 -7.38 6.25 30.24 0.19 -7.19 16 12 N -0.54 -9.11 6.26 27.63 0.17 -8.94 16 13 C 0.70 14.60 8.68 -86.92 -0.75 13.85 16 14 O -0.57 -14.24 17.18 5.29 0.09 -14.15 16 15 N -0.72 -15.14 5.51 -66.41 -0.37 -15.51 16 16 C 0.26 6.84 5.43 -5.19 -0.03 6.81 16 17 C -0.55 -14.30 9.28 -34.44 -0.32 -14.62 16 18 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 19 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.42 13.29 55.43 0.74 -24.69 16 21 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C -0.04 -0.41 9.80 -40.33 -0.40 -0.80 16 26 C -0.12 -1.04 5.75 -104.86 -0.60 -1.64 16 27 C -0.05 -0.31 5.42 -27.09 -0.15 -0.46 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.38 8.10 -51.93 -0.42 -0.05 16 32 H 0.07 0.29 8.11 -51.93 -0.42 -0.13 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.42 5.28 5.81 -182.59 -1.06 4.21 16 36 H 0.44 7.16 8.10 -182.60 -1.48 5.69 16 37 H 0.38 6.69 6.24 -40.82 -0.25 6.44 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.15 1.48 8.05 -52.49 -0.42 1.06 16 42 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -32.84 373.39 -11.79 -44.63 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.82 Total: 8.47 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -3.11 Total: 5.81 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.73 Total: -56.33 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.18 Total: -22.94 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.37 Total: -0.44 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.84 -11.79 -44.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.247 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds