Wall clock time and date at job start Tue Mar 31 2020 20:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35644 * 116.99549 * 180.02562 * 4 3 2 6 6 C 1.38474 * 120.18768 * 359.72863 * 5 4 3 7 7 C 1.38713 * 119.90688 * 179.76725 * 6 5 4 8 8 O 1.35701 * 119.85664 * 180.20983 * 7 6 5 9 9 C 1.42901 * 117.00213 * 180.27403 * 8 7 6 10 10 C 1.39196 * 120.28737 * 0.48756 * 7 6 5 11 11 C 1.36519 * 120.37401 * 359.76528 * 10 7 6 12 12 C 1.39903 * 120.08707 * 0.02562 * 11 10 7 13 13 C 1.47150 * 120.14442 * 179.97438 * 12 11 10 14 14 O 1.21541 * 120.00159 * 180.02562 * 13 12 11 15 15 O 1.34792 * 119.99924 * 0.02562 * 13 12 11 16 16 C 1.45201 * 116.99847 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.46649 * 180.02562 * 16 15 13 18 18 O 1.21283 * 120.00411 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99435 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99721 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00082 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00017 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99873 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99898 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46899 * 90.00074 * 24 22 20 26 26 H 1.48495 * 109.47109 * 209.99702 * 24 22 20 27 27 H 1.48502 * 109.47117 * 329.99811 * 24 22 20 28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 30 30 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 31 31 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 32 32 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 35 35 H 1.07990 * 120.04516 * 359.97438 * 6 5 4 36 36 H 1.09002 * 109.47093 * 59.99855 * 9 8 7 37 37 H 1.09003 * 109.47364 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47141 * 300.00144 * 9 8 7 39 39 H 1.08003 * 119.81008 * 179.75049 * 10 7 6 40 40 H 1.08004 * 119.95827 * 179.97438 * 11 10 7 41 41 H 1.08997 * 109.47460 * 300.00128 * 16 15 13 42 42 H 1.09004 * 109.46859 * 60.00809 * 16 15 13 43 43 H 0.96997 * 120.00808 * 0.02562 * 19 17 16 44 44 H 0.96995 * 120.00151 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0847 2.6511 -0.0001 6 6 3.3343 3.8149 -0.0048 7 6 3.9700 5.0477 0.0006 8 8 3.2336 6.1876 0.0003 9 6 3.9509 7.4235 -0.0001 10 6 5.3600 5.1209 0.0004 11 6 6.1113 3.9809 -0.0002 12 6 5.4864 2.7292 -0.0012 13 6 6.2949 1.4997 -0.0025 14 8 5.7493 0.4136 -0.0038 15 8 7.6405 1.5779 -0.0021 16 6 8.3737 0.3246 -0.0028 17 6 9.8537 0.6086 -0.0016 18 8 10.2515 1.7543 0.0002 19 7 10.7353 -0.4108 -0.0015 20 6 12.0818 -0.1526 0.0001 21 1 12.4360 0.8677 0.0017 22 6 12.9908 -1.2035 -0.0003 23 7 14.2814 -0.9560 0.0008 24 14 12.3783 -2.9683 -0.0037 25 1 12.2178 -3.4337 -1.4047 26 1 13.3605 -3.8346 0.6962 27 1 11.0696 -3.0393 0.6945 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.2557 3.7627 -0.0092 36 1 4.5777 7.4795 -0.8901 37 1 3.2445 8.2536 -0.0007 38 1 4.5778 7.4800 0.8899 39 1 5.8470 6.0849 0.0006 40 1 7.1894 4.0455 -0.0007 41 1 8.1134 -0.2491 0.8867 42 1 8.1139 -0.2477 -0.8934 43 1 10.4173 -1.3272 -0.0025 44 1 14.9159 -1.6896 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789212731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:56 Heat of formation + Delta-G solvation = -166.622933 kcal Electronic energy + Delta-G solvation = -28344.273425 eV Core-core repulsion = 24035.157054 eV Total energy + Delta-G solvation = -4309.116371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06332 -39.90213 -39.36253 -38.21208 -36.89599 -35.88326 -34.18094 -34.00540 -31.76551 -31.41980 -30.27306 -28.57509 -27.67380 -26.89450 -24.64327 -23.74267 -22.73345 -21.69550 -20.75095 -19.57987 -19.07416 -18.52018 -17.83021 -17.09800 -16.74521 -16.70917 -16.15700 -16.10341 -16.07095 -15.60711 -15.09804 -14.92227 -14.50008 -14.45966 -13.95959 -13.84658 -13.66378 -13.17042 -12.88621 -12.82417 -12.77440 -12.50242 -12.34731 -12.31330 -12.17999 -12.00434 -11.95586 -11.42021 -11.26113 -11.23356 -11.21382 -10.79912 -10.61219 -10.35844 -10.23840 -10.01068 -9.63224 -8.97015 -8.60803 -8.44263 -8.25054 -6.35575 -3.88120 0.62821 1.11344 2.61882 2.65129 2.76043 2.92576 3.02666 3.07132 3.15345 3.56885 3.63045 4.07554 4.39169 4.47391 4.51092 4.53766 4.66745 4.67867 4.77785 4.84345 4.84706 4.99455 5.02840 5.04376 5.09553 5.13006 5.16064 5.31358 5.39121 5.46998 5.62506 5.65032 5.73226 5.73291 5.77761 5.86266 5.93974 6.05422 6.20001 6.65832 6.85629 7.09867 7.49683 8.01777 8.07284 8.52584 8.87817 9.34381 9.70818 10.76823 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.002537 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.531456 B =11035.994977 C =13261.171358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.050 3.950 4 O -0.276 6.276 5 C 0.231 3.769 6 C -0.264 4.264 7 C 0.200 3.800 8 O -0.313 6.313 9 C 0.024 3.976 10 C -0.258 4.258 11 C 0.022 3.978 12 C -0.196 4.196 13 C 0.508 3.492 14 O -0.499 6.499 15 O -0.326 6.326 16 C 0.061 3.939 17 C 0.450 3.550 18 O -0.558 6.558 19 N -0.581 5.581 20 C -0.307 4.307 21 H 0.122 0.878 22 C 0.044 3.956 23 N -0.877 5.877 24 Si 0.879 3.121 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.268 1.268 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.144 0.856 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.373 0.627 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.152 9.255 -0.021 29.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.025 4.025 4 O -0.186 6.186 5 C 0.183 3.817 6 C -0.284 4.284 7 C 0.153 3.847 8 O -0.225 6.225 9 C -0.071 4.071 10 C -0.277 4.277 11 C 0.004 3.996 12 C -0.198 4.198 13 C 0.353 3.647 14 O -0.388 6.388 15 O -0.241 6.241 16 C -0.017 4.017 17 C 0.235 3.765 18 O -0.440 6.440 19 N -0.221 5.221 20 C -0.435 4.435 21 H 0.140 0.860 22 C -0.159 4.159 23 N -0.516 5.516 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.193 1.193 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.161 0.839 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.157 0.843 40 H 0.173 0.827 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.206 0.794 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -27.921 9.439 -0.022 29.474 hybrid contribution -0.233 -1.295 0.017 1.316 sum -28.154 8.144 -0.005 29.308 Atomic orbital electron populations 1.21693 0.94282 1.02567 1.02072 1.21467 0.95737 0.94577 1.04297 1.23047 0.78377 0.99402 1.01636 1.86371 1.21147 1.25061 1.86052 1.18563 0.90081 0.84364 0.88714 1.20247 1.00727 0.89088 1.18290 1.18974 0.89855 0.85981 0.89860 1.86019 1.35915 1.13165 1.87396 1.23184 0.98403 0.83375 1.02162 1.20925 0.92207 1.00330 1.14204 1.21032 1.01440 0.89483 0.87666 1.18346 0.89209 0.92383 1.19867 1.20729 0.81285 0.89064 0.73617 1.90859 1.72841 1.29332 1.45771 1.86584 1.18374 1.35269 1.83882 1.22696 0.91424 0.84042 1.03557 1.19222 0.85746 0.86334 0.85181 1.90586 1.79327 1.20549 1.53505 1.42040 1.06884 1.06486 1.66727 1.19422 0.78182 0.97369 1.48528 0.86032 1.25034 0.95080 0.98485 0.97339 1.69611 1.00536 1.32808 1.48639 0.86681 0.79064 0.84706 0.79087 1.19430 1.20003 1.19303 0.91674 0.92425 0.92416 0.90535 0.90537 0.91681 0.91677 0.83855 0.91984 0.87953 0.91978 0.84326 0.82693 0.89485 0.89471 0.79378 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.99 6.30 -26.73 -0.17 -1.16 16 3 C 0.05 0.45 4.74 37.16 0.18 0.63 16 4 O -0.28 -3.67 8.21 -40.54 -0.33 -4.00 16 5 C 0.23 3.04 6.70 -38.69 -0.26 2.78 16 6 C -0.26 -2.85 8.97 -39.32 -0.35 -3.20 16 7 C 0.20 2.08 6.69 -39.05 -0.26 1.81 16 8 O -0.31 -2.80 10.48 -18.81 -0.20 -3.00 16 9 C 0.02 0.13 9.80 101.05 0.99 1.12 16 10 C -0.26 -2.65 8.96 -39.85 -0.36 -3.01 16 11 C 0.02 0.28 9.55 -39.58 -0.38 -0.10 16 12 C -0.20 -2.88 5.89 -104.85 -0.62 -3.49 16 13 C 0.51 8.89 7.88 34.35 0.27 9.16 16 14 O -0.50 -9.45 14.95 -26.63 -0.40 -9.84 16 15 O -0.33 -6.20 8.99 -47.43 -0.43 -6.63 16 16 C 0.06 1.14 5.96 36.01 0.21 1.36 16 17 C 0.45 10.63 7.86 -10.98 -0.09 10.55 16 18 O -0.56 -15.41 16.08 -14.11 -0.23 -15.63 16 19 N -0.58 -14.05 5.09 -10.96 -0.06 -14.10 16 20 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 21 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 22 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 23 N -0.88 -25.39 13.96 55.50 0.77 -24.62 16 24 Si 0.88 19.32 27.74 -169.99 -4.72 14.61 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 34 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 35 H 0.14 1.24 6.31 -52.49 -0.33 0.91 16 36 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 37 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 39 H 0.14 1.07 6.26 -52.48 -0.33 0.74 16 40 H 0.16 1.98 7.60 -52.48 -0.40 1.59 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 44 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -35.41 378.47 -6.40 -41.81 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.82 Total: 7.44 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -0.71 Total: 8.26 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.72 Total: -38.72 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.58 Total: -39.10 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.72 Total: 14.61 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.41 -6.40 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789212731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.815 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds