Wall clock time and date at job start Tue Mar 31 2020 20:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35644 * 116.99549 * 180.02562 * 4 3 2 6 6 C 1.38474 * 120.18768 * 359.72863 * 5 4 3 7 7 C 1.38713 * 119.90688 * 179.76725 * 6 5 4 8 8 O 1.35701 * 119.85664 * 180.20983 * 7 6 5 9 9 C 1.42901 * 117.00213 * 180.27403 * 8 7 6 10 10 C 1.39196 * 120.28737 * 0.48756 * 7 6 5 11 11 C 1.36519 * 120.37401 * 359.76528 * 10 7 6 12 12 C 1.39903 * 120.08707 * 0.02562 * 11 10 7 13 13 C 1.47150 * 120.14442 * 179.97438 * 12 11 10 14 14 O 1.21541 * 120.00159 * 180.02562 * 13 12 11 15 15 O 1.34792 * 119.99924 * 0.02562 * 13 12 11 16 16 C 1.45201 * 116.99847 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.46649 * 180.02562 * 16 15 13 18 18 O 1.21283 * 120.00411 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99435 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99721 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00082 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00017 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99873 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99898 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46899 * 90.00074 * 24 22 20 26 26 H 1.48495 * 109.47109 * 209.99702 * 24 22 20 27 27 H 1.48502 * 109.47117 * 329.99811 * 24 22 20 28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 30 30 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 31 31 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 32 32 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 35 35 H 1.07990 * 120.04516 * 359.97438 * 6 5 4 36 36 H 1.09002 * 109.47093 * 59.99855 * 9 8 7 37 37 H 1.09003 * 109.47364 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47141 * 300.00144 * 9 8 7 39 39 H 1.08003 * 119.81008 * 179.75049 * 10 7 6 40 40 H 1.08004 * 119.95827 * 179.97438 * 11 10 7 41 41 H 1.08997 * 109.47460 * 300.00128 * 16 15 13 42 42 H 1.09004 * 109.46859 * 60.00809 * 16 15 13 43 43 H 0.96997 * 120.00808 * 0.02562 * 19 17 16 44 44 H 0.96995 * 120.00151 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0847 2.6511 -0.0001 6 6 3.3343 3.8149 -0.0048 7 6 3.9700 5.0477 0.0006 8 8 3.2336 6.1876 0.0003 9 6 3.9509 7.4235 -0.0001 10 6 5.3600 5.1209 0.0004 11 6 6.1113 3.9809 -0.0002 12 6 5.4864 2.7292 -0.0012 13 6 6.2949 1.4997 -0.0025 14 8 5.7493 0.4136 -0.0038 15 8 7.6405 1.5779 -0.0021 16 6 8.3737 0.3246 -0.0028 17 6 9.8537 0.6086 -0.0016 18 8 10.2515 1.7543 0.0002 19 7 10.7353 -0.4108 -0.0015 20 6 12.0818 -0.1526 0.0001 21 1 12.4360 0.8677 0.0017 22 6 12.9908 -1.2035 -0.0003 23 7 14.2814 -0.9560 0.0008 24 14 12.3783 -2.9683 -0.0037 25 1 12.2178 -3.4337 -1.4047 26 1 13.3605 -3.8346 0.6962 27 1 11.0696 -3.0393 0.6945 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.2557 3.7627 -0.0092 36 1 4.5777 7.4795 -0.8901 37 1 3.2445 8.2536 -0.0007 38 1 4.5778 7.4800 0.8899 39 1 5.8470 6.0849 0.0006 40 1 7.1894 4.0455 -0.0007 41 1 8.1134 -0.2491 0.8867 42 1 8.1139 -0.2477 -0.8934 43 1 10.4173 -1.3272 -0.0025 44 1 14.9159 -1.6896 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789212731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:55 Heat of formation + Delta-G solvation = -189.700978 kcal Electronic energy + Delta-G solvation = -28345.274164 eV Core-core repulsion = 24035.157054 eV Total energy + Delta-G solvation = -4310.117110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.04571 -41.14626 -40.26641 -39.99642 -37.76845 -37.30990 -36.07749 -34.80151 -33.86780 -32.32873 -31.19958 -30.08785 -28.31150 -27.54610 -26.49094 -24.82464 -23.61003 -22.44110 -21.82285 -21.53212 -20.51565 -19.88248 -19.04513 -18.15168 -17.74845 -17.73663 -17.43168 -17.30655 -17.08243 -16.75146 -16.70813 -15.84549 -15.79312 -15.62318 -15.19852 -15.05685 -14.73369 -14.50594 -14.25067 -14.08930 -14.02292 -13.56914 -13.43653 -13.29941 -13.12911 -13.00405 -12.91050 -12.54158 -12.46260 -12.08636 -12.00558 -11.92509 -11.91369 -11.82430 -11.59041 -11.53918 -11.49779 -10.60455 -10.34269 -9.80676 -9.34743 -8.46267 -6.09069 -0.35971 0.23975 1.29253 1.33192 1.36586 1.45404 1.45435 1.75394 1.92598 2.19880 2.21966 2.59557 2.82723 3.08081 3.57281 3.69797 3.85653 3.87820 3.91508 3.93163 3.98630 4.10774 4.14522 4.23518 4.27963 4.34584 4.42161 4.44501 4.54495 4.57903 4.76823 4.80309 4.83610 5.06359 5.14009 5.14437 5.17775 5.29115 5.32073 5.38117 5.48081 5.84993 6.13775 6.28428 6.47030 6.70454 6.77947 7.25413 7.76781 8.70292 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.002537 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.531456 B =11035.994977 C =13261.171358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.043 3.957 4 O -0.302 6.302 5 C 0.227 3.773 6 C -0.262 4.262 7 C 0.209 3.791 8 O -0.316 6.316 9 C 0.011 3.989 10 C -0.251 4.251 11 C 0.015 3.985 12 C -0.228 4.228 13 C 0.508 3.492 14 O -0.519 6.519 15 O -0.343 6.343 16 C 0.069 3.931 17 C 0.451 3.549 18 O -0.606 6.606 19 N -0.576 5.576 20 C -0.332 4.332 21 H 0.062 0.938 22 C -0.007 4.007 23 N -0.925 5.925 24 Si 0.960 3.040 25 H -0.255 1.255 26 H -0.271 1.271 27 H -0.233 1.233 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.166 0.834 36 H 0.070 0.930 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.165 0.835 40 H 0.145 0.855 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.393 0.607 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.486 8.761 0.005 32.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C -0.031 4.031 4 O -0.214 6.214 5 C 0.179 3.821 6 C -0.281 4.281 7 C 0.162 3.838 8 O -0.228 6.228 9 C -0.083 4.083 10 C -0.269 4.269 11 C -0.003 4.003 12 C -0.230 4.230 13 C 0.355 3.645 14 O -0.410 6.410 15 O -0.259 6.259 16 C -0.008 4.008 17 C 0.238 3.762 18 O -0.490 6.490 19 N -0.218 5.218 20 C -0.461 4.461 21 H 0.080 0.920 22 C -0.207 4.207 23 N -0.564 5.564 24 Si 0.780 3.220 25 H -0.179 1.179 26 H -0.195 1.195 27 H -0.157 1.157 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.184 0.816 36 H 0.089 0.911 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.183 0.817 40 H 0.163 0.837 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.229 0.771 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -31.285 8.958 0.005 32.542 hybrid contribution 0.762 -0.901 0.006 1.180 sum -30.524 8.057 0.011 31.569 Atomic orbital electron populations 1.21668 0.92184 1.03214 1.02969 1.21490 0.97447 0.94000 1.03109 1.23346 0.76420 1.00210 1.03153 1.86338 1.23426 1.25581 1.86022 1.18634 0.89625 0.85151 0.88717 1.20435 1.01701 0.88458 1.17484 1.19068 0.89833 0.86624 0.88309 1.86034 1.36453 1.13668 1.86682 1.23538 0.99407 0.82304 1.03016 1.21147 0.92365 1.00576 1.12828 1.20981 1.01173 0.89761 0.88382 1.18397 0.89873 0.91768 1.22974 1.21214 0.80469 0.89977 0.72823 1.90829 1.72790 1.30192 1.47196 1.86587 1.19578 1.35354 1.84362 1.22563 0.87674 0.84564 1.06002 1.20097 0.87792 0.85411 0.82879 1.90561 1.80742 1.22645 1.55083 1.41816 1.05432 1.07701 1.66890 1.19010 0.80580 0.95447 1.51068 0.91975 1.26069 0.94783 1.04253 0.95609 1.69773 1.02392 1.35153 1.49103 0.85433 0.79995 0.76442 0.80175 1.17926 1.19533 1.15672 0.91205 0.91508 0.91496 0.91748 0.91753 0.90066 0.90069 0.81614 0.91116 0.85563 0.91110 0.81726 0.83729 0.86955 0.86848 0.77136 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.91 71.98 0.71 -0.62 16 2 C -0.12 -1.87 6.30 30.59 0.19 -1.67 16 3 C 0.04 0.70 4.74 71.98 0.34 1.04 16 4 O -0.30 -7.90 8.21 -68.63 -0.56 -8.47 16 5 C 0.23 5.82 6.70 22.85 0.15 5.97 16 6 C -0.26 -5.12 8.97 22.44 0.20 -4.92 16 7 C 0.21 3.86 6.69 22.61 0.15 4.01 16 8 O -0.32 -4.69 10.48 -90.21 -0.95 -5.63 16 9 C 0.01 0.08 9.80 113.37 1.11 1.19 16 10 C -0.25 -4.75 8.96 22.10 0.20 -4.55 16 11 C 0.02 0.39 9.55 22.27 0.21 0.60 16 12 C -0.23 -6.74 5.89 -20.01 -0.12 -6.86 16 13 C 0.51 17.98 7.88 70.16 0.55 18.54 16 14 O -0.52 -19.67 14.95 26.71 0.40 -19.27 16 15 O -0.34 -13.23 8.99 -50.64 -0.46 -13.69 16 16 C 0.07 2.56 5.96 71.24 0.42 2.99 16 17 C 0.45 21.69 7.86 87.66 0.69 22.38 16 18 O -0.61 -35.05 16.08 15.76 0.25 -34.80 16 19 N -0.58 -27.96 5.09 -306.99 -1.56 -29.52 16 20 C -0.33 -19.53 10.16 84.04 0.85 -18.68 16 21 H 0.06 4.31 7.39 -2.91 -0.02 4.29 16 22 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 23 N -0.92 -55.12 13.96 21.66 0.30 -54.82 16 24 Si 0.96 38.77 27.74 68.60 1.90 40.67 16 25 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 26 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 27 H -0.23 -8.08 6.52 99.48 0.65 -7.43 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.04 7.65 -2.39 -0.02 1.02 16 34 H 0.08 1.04 7.67 -2.39 -0.02 1.03 16 35 H 0.17 2.38 6.31 -2.92 -0.02 2.36 16 36 H 0.07 0.43 7.65 -2.39 -0.02 0.42 16 37 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.07 0.43 7.65 -2.39 -0.02 0.42 16 39 H 0.17 2.15 6.26 -2.91 -0.02 2.13 16 40 H 0.14 3.87 7.60 -2.91 -0.02 3.85 16 41 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 42 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 43 H 0.39 15.80 5.76 -92.71 -0.53 15.26 16 44 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -81.90 378.47 5.93 -75.97 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.45 Total: 30.07 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 6.15 Total: 19.49 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -1.26 Total: -84.35 kcal Atomic # 8 Polarization: -80.54 SS G_CDS: -1.31 Total: -81.86 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 1.90 Total: 40.67 kcal Total: -81.90 5.93 -75.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789212731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.727 kcal (2) G-P(sol) polarization free energy of solvation -81.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds