Wall clock time and date at job start Tue Mar 31 2020 20:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35701 * 116.99902 * 2 1 4 4 C 1.39196 * 119.85813 * 0.02562 * 3 2 1 5 5 C 1.36520 * 120.37582 * 180.02562 * 4 3 2 6 6 C 1.39906 * 120.09006 * 0.02562 * 5 4 3 7 7 C 1.47142 * 120.14493 * 179.97438 * 6 5 4 8 8 O 1.21540 * 119.99698 * 180.02562 * 7 6 5 9 9 O 1.34778 * 120.00331 * 0.02562 * 7 6 5 10 10 C 1.45199 * 117.00358 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47368 * 180.02562 * 10 9 7 12 12 O 1.21300 * 119.99965 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00322 * 179.97438 * 11 10 9 14 14 C 1.37101 * 120.00404 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99876 * 359.97438 * 14 13 11 16 16 C 1.38951 * 120.00137 * 180.02562 * 14 13 11 17 17 N 1.31411 * 120.00203 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99879 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47025 * 60.00163 * 18 16 14 20 20 H 1.48504 * 109.47041 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47284 * 300.00035 * 18 16 14 22 22 C 1.40386 * 119.70885 * 359.97067 * 6 5 4 23 23 O 1.35646 * 120.18092 * 180.02562 * 22 6 5 24 24 C 1.42904 * 116.99683 * 185.69874 * 23 22 6 25 25 C 1.53002 * 109.46919 * 275.10793 * 24 23 22 26 26 C 1.52997 * 109.46892 * 155.10981 * 24 23 22 27 27 C 1.38468 * 119.63314 * 0.28266 * 22 6 5 28 28 H 1.08993 * 109.47488 * 59.99928 * 1 2 3 29 29 H 1.09003 * 109.46804 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47286 * 299.99322 * 1 2 3 31 31 H 1.07997 * 119.80695 * 0.02562 * 4 3 2 32 32 H 1.08007 * 119.95615 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47302 * 299.99696 * 10 9 7 34 34 H 1.08997 * 109.47490 * 59.99962 * 10 9 7 35 35 H 0.97001 * 120.00134 * 359.97438 * 13 11 10 36 36 H 0.96994 * 120.00271 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.46921 * 35.10954 * 24 23 22 38 38 H 1.09003 * 109.47455 * 299.99833 * 25 24 23 39 39 H 1.09001 * 109.46562 * 180.02562 * 25 24 23 40 40 H 1.09002 * 109.47146 * 60.00446 * 25 24 23 41 41 H 1.09001 * 109.47260 * 180.02562 * 26 24 23 42 42 H 1.09003 * 109.47434 * 299.99852 * 26 24 23 43 43 H 1.09003 * 109.47360 * 60.00241 * 26 24 23 44 44 H 1.07998 * 120.04824 * 179.72267 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2840 2.3746 0.0005 5 6 1.8928 3.5966 0.0000 6 6 3.2891 3.6846 -0.0016 7 6 3.9464 5.0011 -0.0027 8 8 5.1596 5.0744 -0.0046 9 8 3.2033 6.1255 -0.0017 10 6 3.9191 7.3888 -0.0035 11 6 2.9306 8.5263 -0.0013 12 8 1.7399 8.2950 0.0010 13 7 3.3696 9.8005 -0.0020 14 6 2.4703 10.8354 -0.0005 15 1 1.4101 10.6295 0.0007 16 6 2.9229 12.1491 -0.0017 17 7 4.2129 12.3997 -0.0047 18 14 1.6976 13.5591 -0.0005 19 1 0.8463 13.4740 1.2133 20 1 2.4297 14.8511 -0.0015 21 1 0.8427 13.4730 -1.2117 22 6 4.0602 2.5115 -0.0021 23 8 5.4146 2.5858 -0.0031 24 6 6.1316 1.3561 -0.1300 25 6 6.2852 0.7108 1.2488 26 6 7.5155 1.6314 -0.7213 27 6 3.4305 1.2783 -0.0069 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 0.2059 2.3118 0.0014 32 1 1.2957 4.4966 0.0000 33 1 4.5470 7.4519 0.8853 34 1 4.5436 7.4513 -0.8946 35 1 4.3218 9.9855 -0.0034 36 1 4.5288 13.3167 -0.0052 37 1 5.5829 0.6819 -0.7877 38 1 6.8338 1.3851 1.9065 39 1 6.8325 -0.2269 1.1520 40 1 5.2992 0.5147 1.6701 41 1 8.0623 0.6935 -0.8185 42 1 7.4061 2.0912 -1.7036 43 1 8.0641 2.3057 -0.0636 44 1 4.0172 0.3716 -0.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789215670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:59 Heat of formation + Delta-G solvation = -169.023187 kcal Electronic energy + Delta-G solvation = -28633.818004 eV Core-core repulsion = 24324.597550 eV Total energy + Delta-G solvation = -4309.220454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.07933 -39.81643 -39.44026 -38.02790 -36.89003 -35.77979 -33.94353 -33.38066 -31.44288 -31.28139 -30.02938 -28.32926 -27.73495 -27.40397 -24.71302 -23.87414 -23.31115 -21.14416 -20.81950 -19.48825 -19.07261 -18.00706 -17.75976 -17.02650 -16.81956 -16.29280 -16.03719 -15.99970 -15.67019 -15.50436 -15.01669 -14.79680 -14.43336 -14.02842 -13.91503 -13.72170 -13.48207 -13.26318 -13.02177 -12.79158 -12.58713 -12.51888 -12.39561 -12.19333 -12.13518 -11.83751 -11.58190 -11.45531 -11.31533 -11.08120 -11.05753 -10.79935 -10.46135 -10.27104 -10.23490 -10.12279 -9.55090 -8.90047 -8.45701 -8.39229 -8.03588 -6.45584 -3.87529 0.68349 1.15723 2.68708 2.70921 2.86258 2.97917 3.18399 3.25133 3.30209 3.63648 3.80472 4.15673 4.43652 4.45826 4.60037 4.66213 4.71692 4.75338 4.79361 4.79714 4.93280 5.05858 5.14062 5.16204 5.20128 5.25697 5.29648 5.43396 5.51032 5.54744 5.62610 5.80834 5.81023 5.85284 5.91773 5.99237 6.09577 6.14304 6.25277 6.78444 6.89958 7.18245 7.51499 7.96301 8.14701 8.54014 9.11445 9.44694 9.94943 10.71734 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.002409 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.149477 B =11620.907454 C =13348.225813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.199 3.801 4 C -0.259 4.259 5 C 0.021 3.979 6 C -0.196 4.196 7 C 0.507 3.493 8 O -0.498 6.498 9 O -0.327 6.327 10 C 0.063 3.937 11 C 0.441 3.559 12 O -0.577 6.577 13 N -0.554 5.554 14 C -0.302 4.302 15 H 0.105 0.895 16 C 0.024 3.976 17 N -0.898 5.898 18 Si 0.934 3.066 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.233 3.767 23 O -0.270 6.270 24 C 0.069 3.931 25 C -0.181 4.181 26 C -0.147 4.147 27 C -0.266 4.266 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.155 0.845 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.395 0.605 36 H 0.274 0.726 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -26.784 -0.124 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.152 3.848 4 C -0.277 4.277 5 C 0.003 3.997 6 C -0.198 4.198 7 C 0.351 3.649 8 O -0.387 6.387 9 O -0.242 6.242 10 C -0.014 4.014 11 C 0.225 3.775 12 O -0.461 6.461 13 N -0.191 5.191 14 C -0.431 4.431 15 H 0.123 0.877 16 C -0.178 4.178 17 N -0.539 5.539 18 Si 0.761 3.239 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.184 3.816 23 O -0.181 6.181 24 C 0.013 3.987 25 C -0.238 4.238 26 C -0.204 4.204 27 C -0.285 4.285 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.172 0.828 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.229 0.771 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.619 -26.720 -0.108 26.727 hybrid contribution -0.086 0.818 0.029 0.823 sum 0.533 -25.902 -0.080 25.908 Atomic orbital electron populations 1.23171 0.77562 1.04241 1.02120 1.86016 1.22125 1.26921 1.87463 1.18971 0.91500 0.84297 0.90030 1.20910 1.00748 0.91739 1.14349 1.21027 0.92306 0.98613 0.87748 1.18379 0.93035 0.88668 1.19689 1.20717 0.85626 0.84792 0.73724 1.90862 1.14456 1.87729 1.45673 1.86570 1.39955 1.13910 1.83805 1.22687 0.94522 0.80750 1.03457 1.19350 0.88981 0.83445 0.85685 1.90546 1.16427 1.83895 1.55261 1.41698 1.09987 1.03474 1.63965 1.19670 0.91246 0.83988 1.48199 0.87704 1.25304 0.96753 0.98748 0.96986 1.69607 1.12838 1.21666 1.49754 0.85865 0.79645 0.79253 0.79152 1.19788 1.20902 1.19783 1.18581 0.83166 0.91442 0.88417 1.86452 1.13714 1.32708 1.85220 1.22616 0.93687 0.84907 0.97528 1.22402 1.03190 1.01335 0.96902 1.21830 0.93888 1.02712 1.01996 1.20293 0.92560 0.97347 1.18313 0.92028 0.87997 0.92023 0.84422 0.82774 0.89623 0.89615 0.77143 0.91617 0.90646 0.91100 0.90888 0.91728 0.90570 0.91454 0.91080 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.80 101.05 0.99 1.12 16 2 O -0.31 -2.87 10.48 -18.81 -0.20 -3.07 16 3 C 0.20 2.12 6.69 -39.05 -0.26 1.86 16 4 C -0.26 -2.75 8.96 -39.85 -0.36 -3.10 16 5 C 0.02 0.28 9.55 -39.58 -0.38 -0.10 16 6 C -0.20 -2.98 5.89 -104.85 -0.62 -3.60 16 7 C 0.51 9.27 7.88 34.34 0.27 9.54 16 8 O -0.50 -9.88 14.95 -26.63 -0.40 -10.28 16 9 O -0.33 -6.52 8.99 -47.39 -0.43 -6.95 16 10 C 0.06 1.28 5.95 36.00 0.21 1.49 16 11 C 0.44 10.88 7.86 -10.99 -0.09 10.79 16 12 O -0.58 -16.19 16.08 -14.12 -0.23 -16.41 16 13 N -0.55 -14.29 5.29 -10.96 -0.06 -14.35 16 14 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 15 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 16 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 17 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 18 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 C 0.23 3.16 6.61 -38.69 -0.26 2.91 16 23 O -0.27 -3.73 7.87 -40.55 -0.32 -4.05 16 24 C 0.07 0.65 2.85 -26.73 -0.08 0.57 16 25 C -0.18 -1.43 9.17 37.16 0.34 -1.09 16 26 C -0.15 -1.22 9.56 37.16 0.36 -0.87 16 27 C -0.27 -2.95 8.17 -39.32 -0.32 -3.28 16 28 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 31 H 0.14 1.10 6.26 -52.49 -0.33 0.77 16 32 H 0.15 2.05 7.60 -52.48 -0.40 1.65 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.08 0.61 6.32 -51.93 -0.33 0.28 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.53 6.91 -51.93 -0.36 0.17 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.15 1.32 5.43 -52.49 -0.29 1.04 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -34.42 378.02 -6.36 -40.78 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.71 Total: 8.21 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.42 Total: 8.23 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.67 Total: -38.05 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -1.57 Total: -40.76 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.42 -6.36 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789215670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.247 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds