Wall clock time and date at job start Tue Mar 31 2020 20:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47175 * 2 1 4 4 O 1.42904 * 109.47390 * 120.00371 * 2 1 3 5 5 C 1.35973 * 116.99924 * 151.26210 * 4 2 1 6 6 C 1.38721 * 119.97872 * 185.83413 * 5 4 2 7 7 C 1.38098 * 120.01063 * 179.73069 * 6 5 4 8 8 C 1.38846 * 119.98514 * 0.54224 * 7 6 5 9 9 N 1.40097 * 120.01689 * 179.70251 * 8 7 6 10 10 C 1.34779 * 119.99885 * 139.42240 * 9 8 7 11 11 S 1.71201 * 119.99973 * 354.29791 * 10 9 8 12 12 N 1.34779 * 120.00052 * 174.29624 * 10 9 8 13 13 C 1.46499 * 120.00035 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47238 * 180.02562 * 13 12 10 15 15 O 1.21298 * 119.99572 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00159 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00174 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99640 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00229 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99704 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00034 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47125 * 90.00098 * 21 19 17 23 23 H 1.48501 * 109.47174 * 210.00270 * 21 19 17 24 24 H 1.48499 * 109.47219 * 330.00171 * 21 19 17 25 25 C 1.38852 * 119.96899 * 359.73274 * 8 7 6 26 26 C 1.38094 * 119.98450 * 359.97438 * 25 8 7 27 27 H 1.09004 * 109.47080 * 59.99595 * 1 2 3 28 28 H 1.09008 * 109.47430 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47097 * 299.99731 * 1 2 3 30 30 H 1.09003 * 109.46829 * 240.00167 * 2 1 3 31 31 H 1.09004 * 109.47038 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47257 * 300.00125 * 3 2 1 33 33 H 1.09003 * 109.47106 * 60.00337 * 3 2 1 34 34 H 1.08002 * 119.99603 * 0.02562 * 6 5 4 35 35 H 1.07995 * 120.00931 * 180.25436 * 7 6 5 36 36 H 0.96995 * 120.00133 * 319.42829 * 9 8 7 37 37 H 0.96999 * 120.00170 * 0.02562 * 12 10 9 38 38 H 1.08999 * 109.47243 * 300.00296 * 13 12 10 39 39 H 1.09000 * 109.47332 * 60.00116 * 13 12 10 40 40 H 0.97004 * 120.00197 * 359.97438 * 16 14 13 41 41 H 0.97006 * 120.00020 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.00827 * 179.97438 * 25 8 7 43 43 H 1.07994 * 119.99520 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2137 -1.2921 1.0728 6 6 3.6803 -2.0654 2.1257 7 6 4.9039 -2.6982 2.0287 8 6 5.6721 -2.5512 0.8816 9 7 6.9163 -3.1879 0.7850 10 6 7.2908 -3.7630 -0.3750 11 16 6.1909 -3.8442 -1.6844 12 7 8.5313 -4.2740 -0.5042 13 6 8.9385 -4.8986 -1.7652 14 6 10.3599 -5.3857 -1.6486 15 8 10.9725 -5.2264 -0.6139 16 7 10.9505 -5.9975 -2.6942 17 6 12.2434 -6.4411 -2.5879 18 1 12.7886 -6.2999 -1.6663 19 6 12.8522 -7.0723 -3.6657 20 7 12.1889 -7.2435 -4.7871 21 14 14.6140 -7.6761 -3.5211 22 1 14.6186 -9.0736 -3.0191 23 1 15.2652 -7.6269 -4.8548 24 1 15.3587 -6.8076 -2.5743 25 6 5.2070 -1.7724 -0.1696 26 6 3.9805 -1.1451 -0.0738 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.0844 -2.1764 3.0196 35 1 5.2652 -3.3036 2.8468 36 1 7.5082 -3.2149 1.5530 37 1 9.1544 -4.2283 0.2378 38 1 8.2825 -5.7417 -1.9817 39 1 8.8694 -4.1682 -2.5714 40 1 10.4607 -6.1246 -3.5217 41 1 12.6140 -7.6838 -5.5397 42 1 5.8043 -1.6573 -1.0621 43 1 3.6188 -0.5390 -0.8911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795162463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:01 Heat of formation + Delta-G solvation = -29.275515 kcal Electronic energy + Delta-G solvation = -25211.880222 eV Core-core repulsion = 21383.765304 eV Total energy + Delta-G solvation = -3828.114918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65298 -39.54220 -38.61444 -37.18807 -34.90448 -34.08047 -33.24636 -31.51450 -31.17433 -29.30444 -27.73135 -27.35932 -24.86556 -24.12825 -23.39879 -22.24526 -21.11305 -19.91027 -18.74496 -18.57011 -18.25211 -17.72723 -16.28023 -15.96486 -15.62803 -15.48456 -15.29680 -15.15998 -14.85106 -14.44332 -14.37047 -13.98409 -13.79047 -13.58339 -13.47341 -13.04876 -12.76171 -12.57041 -12.52738 -12.46102 -12.39285 -11.83435 -11.72038 -11.47856 -11.20755 -11.10909 -10.95922 -10.83145 -10.53284 -10.40414 -9.75298 -9.59900 -9.19159 -8.84101 -8.22268 -8.11834 -7.68960 -7.03337 -6.61119 -4.04039 0.92392 1.27187 1.65596 1.98889 2.52307 2.96780 3.04564 3.16861 3.21500 3.50140 3.59059 3.65673 4.02556 4.42332 4.55388 4.65021 4.66243 4.78121 4.79176 5.04736 5.07090 5.16792 5.19322 5.31787 5.33911 5.36236 5.43117 5.63558 5.71502 5.72417 5.76830 5.79170 5.89135 5.92251 6.12168 6.18672 6.30444 6.48413 6.60122 6.93422 7.27186 7.31511 7.36640 7.80529 8.31394 8.93181 9.25951 9.72548 10.55026 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.033435 B = 0.001827 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.252840 B =15326.062760 C =15813.760899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 C -0.178 4.178 4 O -0.312 6.312 5 C 0.132 3.868 6 C -0.151 4.151 7 C -0.086 4.086 8 C 0.096 3.904 9 N -0.635 5.635 10 C 0.558 3.442 11 S -0.636 6.636 12 N -0.647 5.647 13 C 0.112 3.888 14 C 0.420 3.580 15 O -0.603 6.603 16 N -0.539 5.539 17 C -0.309 4.309 18 H 0.106 0.894 19 C 0.029 3.971 20 N -0.889 5.889 21 Si 0.935 3.065 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.268 1.268 25 C -0.029 4.029 26 C -0.202 4.202 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.407 0.593 37 H 0.411 0.589 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.398 0.602 41 H 0.276 0.724 42 H 0.149 0.851 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.764 13.913 10.412 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 C -0.236 4.236 4 O -0.226 6.226 5 C 0.086 3.914 6 C -0.170 4.170 7 C -0.107 4.107 8 C 0.003 3.997 9 N -0.262 5.262 10 C 0.197 3.803 11 S -0.507 6.507 12 N -0.275 5.275 13 C -0.015 4.015 14 C 0.206 3.794 15 O -0.491 6.491 16 N -0.173 5.173 17 C -0.438 4.438 18 H 0.124 0.876 19 C -0.175 4.175 20 N -0.528 5.528 21 Si 0.761 3.239 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.193 1.193 25 C -0.052 4.052 26 C -0.222 4.222 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.245 0.755 37 H 0.251 0.749 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.232 0.768 41 H 0.086 0.914 42 H 0.166 0.834 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.049 13.775 9.993 25.544 hybrid contribution 1.795 -0.482 0.587 1.949 sum -17.255 13.293 10.580 24.215 Atomic orbital electron populations 1.21871 0.92655 1.03199 1.02929 1.22470 0.95288 0.92701 0.87761 1.22352 1.02297 0.95890 1.03015 1.86112 1.32617 1.65941 1.37933 1.19015 0.85195 0.92854 0.94314 1.20054 0.96856 1.01081 0.99052 1.20643 0.93124 0.99396 0.97542 1.17258 0.86502 0.98615 0.97323 1.42107 1.18519 1.53992 1.11609 1.22250 0.87447 0.80632 0.89939 1.93369 1.48386 1.78463 1.30494 1.44742 1.10288 1.54216 1.18210 1.21406 0.96032 0.99848 0.84228 1.19624 0.87787 0.86076 0.85933 1.90507 1.65661 1.63106 1.29844 1.41749 1.13580 1.48912 1.13048 1.19735 0.88320 1.34888 1.00906 0.87598 1.25361 1.00613 0.96845 0.94710 1.69614 1.38129 1.41759 1.03289 0.85788 0.81150 0.79191 0.77769 1.20159 1.20664 1.19292 1.21230 0.95959 0.90477 0.97528 1.21072 0.96634 1.06057 0.98452 0.90568 0.91616 0.91583 0.90399 0.91721 0.91014 0.91545 0.85001 0.85244 0.75544 0.74862 0.87689 0.87645 0.76769 0.91370 0.83391 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.56 37.16 0.36 -0.54 16 2 C 0.07 0.57 2.83 -26.73 -0.08 0.49 16 3 C -0.18 -1.14 9.27 37.16 0.34 -0.80 16 4 O -0.31 -3.16 9.79 -19.65 -0.19 -3.35 16 5 C 0.13 1.43 6.64 -39.23 -0.26 1.17 16 6 C -0.15 -1.51 9.98 -39.45 -0.39 -1.91 16 7 C -0.09 -0.85 9.96 -39.41 -0.39 -1.24 16 8 C 0.10 1.12 5.95 -83.63 -0.50 0.63 16 9 N -0.64 -7.16 5.34 -11.37 -0.06 -7.22 16 10 C 0.56 8.06 7.75 -86.91 -0.67 7.38 16 11 S -0.64 -11.21 24.96 -107.50 -2.68 -13.90 16 12 N -0.65 -9.61 5.53 -63.21 -0.35 -9.96 16 13 C 0.11 1.91 5.61 -5.19 -0.03 1.88 16 14 C 0.42 9.10 7.85 -10.99 -0.09 9.01 16 15 O -0.60 -14.62 15.24 5.54 0.08 -14.53 16 16 N -0.54 -12.83 5.29 -10.96 -0.06 -12.88 16 17 C -0.31 -8.14 9.68 -14.93 -0.14 -8.28 16 18 H 0.11 2.90 7.16 -52.49 -0.38 2.53 16 19 C 0.03 0.73 5.50 -17.47 -0.10 0.63 16 20 N -0.89 -23.10 13.05 55.50 0.72 -22.38 16 21 Si 0.93 19.99 29.55 -169.99 -5.02 14.97 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 C -0.03 -0.37 7.85 -39.41 -0.31 -0.68 16 26 C -0.20 -2.22 8.42 -39.46 -0.33 -2.56 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.60 6.09 -51.93 -0.32 0.29 16 31 H 0.06 0.46 7.30 -51.93 -0.38 0.08 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.41 3.36 8.84 -40.82 -0.36 3.00 16 37 H 0.41 5.84 7.46 -40.82 -0.30 5.54 16 38 H 0.11 1.77 7.99 -51.93 -0.41 1.35 16 39 H 0.11 1.75 7.99 -51.93 -0.42 1.34 16 40 H 0.40 9.14 7.90 -40.82 -0.32 8.82 16 41 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.15 2.06 6.14 -46.75 -0.29 1.78 16 43 H 0.13 1.25 5.55 -52.49 -0.29 0.96 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -31.49 374.47 -10.07 -41.56 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -5.56 Total: 16.86 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -2.59 Total: 5.19 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.26 Total: -52.44 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.11 Total: -17.88 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: -11.21 SS G_CDS: -2.68 Total: -13.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.49 -10.07 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795162463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.285 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds