Wall clock time and date at job start Tue Mar 31 2020 20:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47175 * 2 1 4 4 O 1.42904 * 109.47390 * 120.00371 * 2 1 3 5 5 C 1.35973 * 116.99924 * 151.26210 * 4 2 1 6 6 C 1.38721 * 119.97872 * 185.83413 * 5 4 2 7 7 C 1.38098 * 120.01063 * 179.73069 * 6 5 4 8 8 C 1.38846 * 119.98514 * 0.54224 * 7 6 5 9 9 N 1.40097 * 120.01689 * 179.70251 * 8 7 6 10 10 C 1.34779 * 119.99885 * 139.42240 * 9 8 7 11 11 S 1.71201 * 119.99973 * 354.29791 * 10 9 8 12 12 N 1.34779 * 120.00052 * 174.29624 * 10 9 8 13 13 C 1.46499 * 120.00035 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47238 * 180.02562 * 13 12 10 15 15 O 1.21298 * 119.99572 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00159 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00174 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99640 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00229 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99704 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00034 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47125 * 90.00098 * 21 19 17 23 23 H 1.48501 * 109.47174 * 210.00270 * 21 19 17 24 24 H 1.48499 * 109.47219 * 330.00171 * 21 19 17 25 25 C 1.38852 * 119.96899 * 359.73274 * 8 7 6 26 26 C 1.38094 * 119.98450 * 359.97438 * 25 8 7 27 27 H 1.09004 * 109.47080 * 59.99595 * 1 2 3 28 28 H 1.09008 * 109.47430 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47097 * 299.99731 * 1 2 3 30 30 H 1.09003 * 109.46829 * 240.00167 * 2 1 3 31 31 H 1.09004 * 109.47038 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47257 * 300.00125 * 3 2 1 33 33 H 1.09003 * 109.47106 * 60.00337 * 3 2 1 34 34 H 1.08002 * 119.99603 * 0.02562 * 6 5 4 35 35 H 1.07995 * 120.00931 * 180.25436 * 7 6 5 36 36 H 0.96995 * 120.00133 * 319.42829 * 9 8 7 37 37 H 0.96999 * 120.00170 * 0.02562 * 12 10 9 38 38 H 1.08999 * 109.47243 * 300.00296 * 13 12 10 39 39 H 1.09000 * 109.47332 * 60.00116 * 13 12 10 40 40 H 0.97004 * 120.00197 * 359.97438 * 16 14 13 41 41 H 0.97006 * 120.00020 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.00827 * 179.97438 * 25 8 7 43 43 H 1.07994 * 119.99520 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2137 -1.2921 1.0728 6 6 3.6803 -2.0654 2.1257 7 6 4.9039 -2.6982 2.0287 8 6 5.6721 -2.5512 0.8816 9 7 6.9163 -3.1879 0.7850 10 6 7.2908 -3.7630 -0.3750 11 16 6.1909 -3.8442 -1.6844 12 7 8.5313 -4.2740 -0.5042 13 6 8.9385 -4.8986 -1.7652 14 6 10.3599 -5.3857 -1.6486 15 8 10.9725 -5.2264 -0.6139 16 7 10.9505 -5.9975 -2.6942 17 6 12.2434 -6.4411 -2.5879 18 1 12.7886 -6.2999 -1.6663 19 6 12.8522 -7.0723 -3.6657 20 7 12.1889 -7.2435 -4.7871 21 14 14.6140 -7.6761 -3.5211 22 1 14.6186 -9.0736 -3.0191 23 1 15.2652 -7.6269 -4.8548 24 1 15.3587 -6.8076 -2.5743 25 6 5.2070 -1.7724 -0.1696 26 6 3.9805 -1.1451 -0.0738 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.0844 -2.1764 3.0196 35 1 5.2652 -3.3036 2.8468 36 1 7.5082 -3.2149 1.5530 37 1 9.1544 -4.2283 0.2378 38 1 8.2825 -5.7417 -1.9817 39 1 8.8694 -4.1682 -2.5714 40 1 10.4607 -6.1246 -3.5217 41 1 12.6140 -7.6838 -5.5397 42 1 5.8043 -1.6573 -1.0621 43 1 3.6188 -0.5390 -0.8911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795162463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:00 Heat of formation + Delta-G solvation = -49.123391 kcal Electronic energy + Delta-G solvation = -25212.740890 eV Core-core repulsion = 21383.765304 eV Total energy + Delta-G solvation = -3828.975586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52303 -40.77759 -39.98374 -38.30965 -36.27435 -35.66573 -33.92907 -33.41956 -32.00577 -30.43965 -28.79544 -28.09336 -26.56267 -25.26886 -24.29126 -23.21155 -21.84082 -21.51827 -20.21488 -19.78295 -19.39143 -18.86656 -17.61461 -17.06601 -16.84850 -16.76814 -16.58862 -16.30142 -16.14120 -15.63179 -15.44799 -15.35722 -14.92133 -14.51860 -14.26898 -14.19451 -13.97462 -13.56721 -13.47282 -13.42375 -13.15243 -13.06625 -12.94403 -12.68127 -12.48130 -12.36597 -12.17300 -12.13688 -11.71332 -11.59962 -11.54101 -10.69122 -10.65797 -10.13727 -10.04206 -9.20983 -8.89831 -8.53683 -8.29323 -6.04415 -0.11925 0.42563 0.59752 0.81712 1.30134 1.34520 1.43542 1.55473 1.84755 2.22821 2.28041 2.43909 2.80158 3.00466 3.13610 3.83620 3.87724 3.97293 4.04581 4.07139 4.19988 4.25963 4.32945 4.34343 4.41965 4.46255 4.63564 4.73342 4.85256 4.89733 4.93187 5.01457 5.16262 5.19540 5.26262 5.29906 5.35866 5.44926 5.50763 5.67725 5.86239 5.95222 6.25217 6.42287 6.51093 6.99619 7.38531 7.87701 8.62752 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.033435 B = 0.001827 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.252840 B =15326.062760 C =15813.760899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.065 3.935 3 C -0.174 4.174 4 O -0.320 6.320 5 C 0.129 3.871 6 C -0.154 4.154 7 C -0.075 4.075 8 C 0.074 3.926 9 N -0.611 5.611 10 C 0.576 3.424 11 S -0.698 6.698 12 N -0.644 5.644 13 C 0.132 3.868 14 C 0.429 3.571 15 O -0.627 6.627 16 N -0.552 5.552 17 C -0.339 4.339 18 H 0.088 0.912 19 C -0.008 4.008 20 N -0.912 5.912 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.043 4.043 26 C -0.207 4.207 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.425 0.575 37 H 0.417 0.583 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.400 0.600 41 H 0.281 0.719 42 H 0.129 0.871 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.413 14.372 11.719 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 C -0.232 4.232 4 O -0.235 6.235 5 C 0.083 3.917 6 C -0.174 4.174 7 C -0.095 4.095 8 C -0.018 4.018 9 N -0.237 5.237 10 C 0.213 3.787 11 S -0.570 6.570 12 N -0.273 5.273 13 C 0.004 3.996 14 C 0.216 3.784 15 O -0.516 6.516 16 N -0.186 5.186 17 C -0.469 4.469 18 H 0.106 0.894 19 C -0.210 4.210 20 N -0.551 5.551 21 Si 0.820 3.180 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.194 1.194 25 C -0.065 4.065 26 C -0.227 4.227 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.170 0.830 35 H 0.176 0.824 36 H 0.266 0.734 37 H 0.258 0.742 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.235 0.765 41 H 0.090 0.910 42 H 0.147 0.853 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.733 14.268 11.347 26.865 hybrid contribution 1.856 -0.504 0.300 1.946 sum -17.877 13.764 11.647 25.391 Atomic orbital electron populations 1.21891 0.91280 1.03181 1.04020 1.22718 0.96384 0.93093 0.86855 1.22328 1.01653 0.95224 1.03965 1.86111 1.32191 1.65992 1.39179 1.19204 0.85401 0.92757 0.94347 1.20382 0.97038 1.00447 0.99492 1.20906 0.92551 0.98769 0.97317 1.17441 0.86949 0.99392 0.98063 1.42004 1.18691 1.52002 1.11027 1.21801 0.86463 0.80350 0.90077 1.93518 1.49954 1.80653 1.32858 1.44495 1.10552 1.54592 1.17673 1.21115 0.92745 1.00283 0.85438 1.20288 0.89106 0.84238 0.84793 1.90488 1.66934 1.63522 1.30657 1.41791 1.13243 1.49865 1.13750 1.19740 0.89622 1.36668 1.00828 0.89406 1.26135 1.04187 0.96485 0.94143 1.69679 1.39547 1.42149 1.03756 0.84867 0.76558 0.78618 0.77948 1.19565 1.19691 1.19424 1.21144 0.96438 0.91627 0.97312 1.21156 0.96255 1.06170 0.99089 0.88687 0.92185 0.91289 0.90800 0.92684 0.89270 0.91389 0.83040 0.82445 0.73409 0.74156 0.87070 0.86904 0.76515 0.90960 0.85301 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.56 71.98 0.69 -0.84 16 2 C 0.07 0.93 2.83 30.59 0.09 1.01 16 3 C -0.17 -2.02 9.27 71.98 0.67 -1.36 16 4 O -0.32 -6.11 9.79 -93.24 -0.91 -7.03 16 5 C 0.13 2.64 6.64 22.50 0.15 2.79 16 6 C -0.15 -2.76 9.98 22.35 0.22 -2.54 16 7 C -0.07 -1.30 9.96 22.38 0.22 -1.08 16 8 C 0.07 1.64 5.95 38.11 0.23 1.86 16 9 N -0.61 -12.73 5.34 -189.87 -1.01 -13.75 16 10 C 0.58 16.08 7.75 179.05 1.39 17.47 16 11 S -0.70 -24.66 24.96 -56.49 -1.41 -26.07 16 12 N -0.64 -18.46 5.53 -353.90 -1.96 -20.42 16 13 C 0.13 4.43 5.61 85.63 0.48 4.91 16 14 C 0.43 18.57 7.85 87.66 0.69 19.26 16 15 O -0.63 -30.35 15.24 -3.09 -0.05 -30.39 16 16 N -0.55 -26.59 5.29 -306.98 -1.62 -28.21 16 17 C -0.34 -18.11 9.68 84.04 0.81 -17.29 16 18 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 19 C -0.01 -0.41 5.50 84.93 0.47 0.05 16 20 N -0.91 -47.43 13.05 21.66 0.28 -47.14 16 21 Si 1.00 40.74 29.55 68.60 2.03 42.77 16 22 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 C -0.04 -1.06 7.85 22.38 0.18 -0.89 16 26 C -0.21 -4.49 8.42 22.35 0.19 -4.30 16 27 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 1.10 6.09 -2.39 -0.01 1.09 16 31 H 0.05 0.74 7.30 -2.38 -0.02 0.73 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.42 5.97 8.84 -92.71 -0.82 5.15 16 37 H 0.42 11.28 7.46 -92.71 -0.69 10.59 16 38 H 0.11 3.69 7.99 -2.39 -0.02 3.67 16 39 H 0.11 3.70 7.99 -2.39 -0.02 3.68 16 40 H 0.40 18.67 7.90 -92.71 -0.73 17.94 16 41 H 0.28 13.69 8.31 -92.70 -0.77 12.92 16 42 H 0.13 3.70 6.14 -6.55 -0.04 3.66 16 43 H 0.14 2.67 5.55 -2.91 -0.02 2.65 16 Total: -1.00 -67.84 374.47 0.63 -67.21 By element: Atomic # 1 Polarization: 45.17 SS G_CDS: -1.18 Total: 43.98 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 6.46 Total: 19.05 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -4.31 Total: -109.52 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.96 Total: -37.42 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: -24.66 SS G_CDS: -1.41 Total: -26.07 kcal Total: -67.84 0.63 -67.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795162463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.089 kcal (2) G-P(sol) polarization free energy of solvation -67.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds