Wall clock time and date at job start Tue Mar 31 2020 20:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99926 * 2 1 4 4 C 1.52993 * 109.47064 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47569 * 299.99814 * 4 3 2 6 6 N 1.46503 * 109.47231 * 179.97438 * 4 3 2 7 7 C 1.34773 * 120.00328 * 179.72013 * 6 4 3 8 8 O 1.21282 * 119.99901 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00188 * 180.02562 * 7 6 4 10 10 C 1.50704 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38303 * 119.92683 * 269.72484 * 10 9 7 12 12 C 1.38101 * 120.06760 * 179.72617 * 11 10 9 13 13 C 1.38878 * 119.93205 * 0.57089 * 12 11 10 14 14 O 1.35749 * 120.07283 * 179.68373 * 13 12 11 15 15 C 1.34828 * 117.00165 * 174.48467 * 14 13 12 16 16 H 1.08006 * 119.99886 * 5.06308 * 15 14 13 17 17 C 1.38647 * 120.00131 * 185.05363 * 15 14 13 18 18 N 1.31551 * 120.00046 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 120.00199 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46914 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47385 * 119.99942 * 19 17 15 22 22 H 1.48496 * 109.46921 * 240.00243 * 19 17 15 23 23 C 1.38886 * 119.85798 * 359.70103 * 13 12 11 24 24 C 1.38091 * 119.93438 * 0.02562 * 23 13 12 25 25 C 1.50704 * 109.47336 * 59.99903 * 4 3 2 26 26 O 1.20818 * 120.00008 * 264.99887 * 25 4 3 27 27 O 1.34234 * 119.99936 * 84.99732 * 25 4 3 28 28 H 1.09000 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47068 * 300.00112 * 1 2 3 30 30 H 1.09006 * 109.46666 * 60.00244 * 1 2 3 31 31 H 1.08991 * 109.47099 * 59.99736 * 3 2 1 32 32 H 1.09008 * 109.46842 * 300.00037 * 3 2 1 33 33 H 1.09000 * 109.47214 * 300.00379 * 5 4 3 34 34 H 1.08999 * 109.46851 * 59.99846 * 5 4 3 35 35 H 1.08996 * 109.47767 * 179.97438 * 5 4 3 36 36 H 0.96996 * 119.99801 * 0.02562 * 6 4 3 37 37 H 1.08998 * 109.46805 * 299.99880 * 9 7 6 38 38 H 1.08995 * 109.47159 * 60.00316 * 9 7 6 39 39 H 1.07996 * 119.96638 * 359.97438 * 11 10 9 40 40 H 1.07994 * 120.03506 * 180.27342 * 12 11 10 41 41 H 0.97008 * 120.00181 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.03632 * 179.97438 * 23 13 12 43 43 H 1.07997 * 119.97301 * 179.97438 * 24 23 13 44 44 H 0.96700 * 117.00257 * 179.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9865 0.4257 1.2502 6 7 4.1313 2.5230 0.0000 7 6 5.4716 2.6640 0.0061 8 8 6.1845 1.6828 0.0117 9 6 6.0846 4.0407 0.0061 10 6 7.5869 3.9217 0.0129 11 6 8.2699 3.8754 1.2146 12 6 9.6461 3.7606 1.2243 13 6 10.3452 3.7038 0.0256 14 8 11.6985 3.5974 0.0318 15 6 12.3050 3.4320 -1.1609 16 1 11.7255 3.4713 -2.0715 17 6 13.6726 3.2117 -1.2186 18 7 14.3785 3.1635 -0.1096 19 14 14.5131 2.9832 -2.8713 20 1 13.5046 3.0801 -3.9570 21 1 15.5410 4.0392 -3.0541 22 1 15.1615 1.6481 -2.9164 23 6 9.6568 3.7562 -1.1795 24 6 8.2802 3.8653 -1.1825 25 6 3.9807 0.4366 -1.2295 26 8 4.1746 -0.7547 -1.1749 27 8 4.1618 1.0938 -2.3859 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.6645 0.9668 2.1399 34 1 3.5431 -0.5700 1.2502 35 1 5.0730 0.3392 1.2504 36 1 3.5612 3.3077 -0.0003 37 1 5.7672 4.5796 -0.8866 38 1 5.7588 4.5835 0.8933 39 1 7.7262 3.9249 2.1464 40 1 10.1786 3.7200 2.1630 41 1 15.3353 3.0090 -0.1499 42 1 10.1976 3.7126 -2.1133 43 1 7.7443 3.9065 -2.1192 44 1 4.4482 0.5714 -3.1476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831613564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:51 Heat of formation + Delta-G solvation = -165.497652 kcal Electronic energy + Delta-G solvation = -29051.165578 eV Core-core repulsion = 24742.098003 eV Total energy + Delta-G solvation = -4309.067575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.11501 -39.51962 -38.77359 -38.38375 -36.57811 -36.18996 -35.45580 -32.55042 -31.97909 -30.65638 -30.10833 -27.91242 -26.79165 -26.15915 -25.07779 -24.61304 -21.94314 -21.70667 -20.32048 -20.04268 -18.34616 -17.94284 -17.53275 -17.41300 -16.88745 -16.70789 -16.17668 -15.89951 -15.31815 -15.06955 -14.76798 -14.49946 -14.27931 -14.11956 -13.83913 -13.63455 -13.52752 -13.31581 -12.87401 -12.71372 -12.65686 -12.39888 -12.23060 -12.10355 -11.81668 -11.67926 -11.51946 -11.47876 -11.24391 -10.84136 -10.73463 -10.72108 -10.56839 -10.38979 -10.27236 -9.73775 -9.41577 -9.28326 -8.79026 -8.11169 -7.13025 -6.41162 -3.99550 2.06064 2.24463 2.29287 2.55023 2.63903 2.94756 3.14984 3.17093 3.22340 3.53170 4.00269 4.15797 4.31971 4.55646 4.66613 4.82151 4.83880 4.93329 4.98448 5.11592 5.17384 5.20903 5.26508 5.31701 5.35526 5.54753 5.61033 5.67668 5.76356 5.87954 6.07435 6.16263 6.25643 6.44543 6.45709 6.50538 6.73813 6.95049 7.09078 7.25212 7.29610 7.40562 7.49082 7.82917 7.87707 8.04296 8.18658 9.04740 9.75357 10.77038 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.021533 B = 0.002318 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.038709 B =12076.553509 C =12633.443207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.062 3.938 4 C 0.197 3.803 5 C -0.154 4.154 6 N -0.727 5.727 7 C 0.516 3.484 8 O -0.507 6.507 9 C -0.075 4.075 10 C -0.173 4.173 11 C -0.059 4.059 12 C -0.192 4.192 13 C 0.157 3.843 14 O -0.178 6.178 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.233 4.233 24 C -0.055 4.055 25 C 0.487 3.513 26 O -0.495 6.495 27 O -0.514 6.514 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.404 0.596 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.862 1.058 -0.570 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C -0.016 4.016 4 C 0.109 3.891 5 C -0.212 4.212 6 N -0.385 5.385 7 C 0.303 3.697 8 O -0.379 6.379 9 C -0.115 4.115 10 C -0.174 4.174 11 C -0.077 4.077 12 C -0.211 4.211 13 C 0.103 3.897 14 O -0.082 6.082 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.252 4.252 24 C -0.073 4.073 25 C 0.326 3.674 26 O -0.380 6.380 27 O -0.326 6.326 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.239 0.761 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.122 0.878 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -27.852 0.004 0.026 27.852 hybrid contribution 0.044 0.094 -1.465 1.469 sum -27.808 0.098 -1.439 27.845 Atomic orbital electron populations 1.22822 0.79994 1.03426 1.00241 1.87979 1.20379 1.25731 1.95474 1.22572 0.90048 0.86583 1.02401 1.19927 0.92721 0.84304 0.92190 1.22118 1.04959 1.00828 0.93252 1.46026 1.07601 1.06446 1.78439 1.21187 0.80664 0.92961 0.74863 1.90768 1.60424 1.40394 1.46335 1.20383 0.94295 0.92703 1.04102 1.18603 0.91832 1.13212 0.93745 1.20394 0.93151 0.97905 0.96248 1.20154 0.93405 1.11288 0.96247 1.19391 0.84862 0.92123 0.93285 1.83975 1.13235 1.77865 1.33085 1.21375 0.91324 1.50712 0.83211 0.89031 1.25290 0.95510 0.96561 0.99242 1.70050 1.07431 1.45563 1.26756 0.85647 0.79301 0.78292 0.80180 1.19117 1.20172 1.20150 1.21106 0.94275 1.11444 0.98370 1.20506 0.93600 0.97017 0.96199 1.23304 0.73458 0.86376 0.84254 1.90706 1.46013 1.16431 1.84875 1.84490 1.80456 1.46639 1.20970 0.89040 0.93569 0.93792 0.90623 0.91562 0.91135 0.89721 0.89351 0.76106 0.88690 0.88720 0.87360 0.86553 0.92111 0.85614 0.87819 0.73281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.42 9.65 -35.23 -0.34 -3.76 16 3 C 0.06 0.44 4.91 37.15 0.18 0.62 16 4 C 0.20 2.07 0.86 -132.97 -0.11 1.96 16 5 C -0.15 -1.81 7.78 37.16 0.29 -1.52 16 6 N -0.73 -6.58 4.87 -48.68 -0.24 -6.82 16 7 C 0.52 6.73 7.15 -10.99 -0.08 6.65 16 8 O -0.51 -9.24 13.24 5.56 0.07 -9.17 16 9 C -0.08 -0.87 5.83 -29.03 -0.17 -1.04 16 10 C -0.17 -2.94 4.38 -104.57 -0.46 -3.40 16 11 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 12 C -0.19 -4.20 9.99 -39.39 -0.39 -4.59 16 13 C 0.16 3.93 6.65 -39.10 -0.26 3.67 16 14 O -0.18 -5.23 9.76 0.06 0.00 -5.23 16 15 C -0.39 -11.18 9.49 30.88 0.29 -10.89 16 16 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 19 Si 0.94 21.04 29.55 -169.99 -5.02 16.01 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.23 -5.25 9.17 -39.40 -0.36 -5.61 16 24 C -0.05 -1.04 9.69 -39.61 -0.38 -1.42 16 25 C 0.49 6.62 5.46 36.01 0.20 6.82 16 26 O -0.50 -8.41 16.85 -18.74 -0.32 -8.72 16 27 O -0.51 -5.80 13.03 -39.27 -0.51 -6.32 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.05 7.41 -51.93 -0.38 0.67 16 35 H 0.09 1.34 6.15 -51.93 -0.32 1.02 16 36 H 0.40 2.02 8.47 -40.82 -0.35 1.67 16 37 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.13 2.84 5.64 -52.48 -0.30 2.55 16 43 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.41 3.26 9.10 45.56 0.41 3.68 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -38.67 378.98 -5.49 -44.17 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.98 Total: 7.15 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.62 Total: -7.96 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.52 Total: -31.88 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -1.09 Total: -33.20 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.67 -5.49 -44.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831613564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.331 kcal (2) G-P(sol) polarization free energy of solvation -38.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds