Wall clock time and date at job start Tue Mar 31 2020 20:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00374 * 2 1 4 4 C 1.52998 * 109.47582 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46980 * 59.99754 * 4 3 2 6 6 N 1.46495 * 109.47156 * 179.97438 * 4 3 2 7 7 C 1.34778 * 120.00352 * 180.02562 * 6 4 3 8 8 O 1.21289 * 119.99598 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00467 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.47177 * 180.02562 * 9 7 6 11 11 C 1.38305 * 119.92619 * 269.72075 * 10 9 7 12 12 C 1.38097 * 120.06995 * 179.72301 * 11 10 9 13 13 C 1.38880 * 119.92861 * 0.57382 * 12 11 10 14 14 O 1.35749 * 120.06926 * 179.68046 * 13 12 11 15 15 C 1.34838 * 117.00038 * 174.48543 * 14 13 12 16 16 H 1.08006 * 119.99581 * 5.05980 * 15 14 13 17 17 C 1.38649 * 120.00205 * 185.05299 * 15 14 13 18 18 N 1.31562 * 119.99730 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46678 * 90.00430 * 19 17 15 21 21 H 1.48502 * 109.47275 * 210.00034 * 19 17 15 22 22 H 1.48500 * 109.47344 * 330.00750 * 19 17 15 23 23 C 1.38884 * 119.86005 * 359.70171 * 13 12 11 24 24 C 1.38098 * 119.93423 * 0.02562 * 23 13 12 25 25 C 1.50703 * 109.47157 * 299.99774 * 4 3 2 26 26 O 1.20826 * 119.99551 * 94.99508 * 25 4 3 27 27 O 1.34222 * 120.00055 * 275.00141 * 25 4 3 28 28 H 1.09004 * 109.47032 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46899 * 300.00209 * 1 2 3 30 30 H 1.09001 * 109.47174 * 60.00544 * 1 2 3 31 31 H 1.09009 * 109.47042 * 59.99553 * 3 2 1 32 32 H 1.09003 * 109.46717 * 300.00024 * 3 2 1 33 33 H 1.08998 * 109.47454 * 300.00024 * 5 4 3 34 34 H 1.09003 * 109.47269 * 60.00494 * 5 4 3 35 35 H 1.09001 * 109.47498 * 179.97438 * 5 4 3 36 36 H 0.97002 * 120.00144 * 359.97438 * 6 4 3 37 37 H 1.09003 * 109.46744 * 299.99793 * 9 7 6 38 38 H 1.08993 * 109.47696 * 59.99389 * 9 7 6 39 39 H 1.08002 * 119.96355 * 359.97438 * 11 10 9 40 40 H 1.08001 * 120.03782 * 180.27187 * 12 11 10 41 41 H 0.97005 * 119.99553 * 179.97438 * 18 17 15 42 42 H 1.08009 * 120.03305 * 179.97438 * 23 13 12 43 43 H 1.07998 * 119.96738 * 179.97438 * 24 23 13 44 44 H 0.96704 * 117.00534 * 179.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4251 -1.2482 6 7 4.1313 2.5229 0.0000 7 6 5.4717 2.6639 -0.0001 8 8 6.1846 1.6826 0.0008 9 6 6.0847 4.0406 -0.0001 10 6 7.5870 3.9216 -0.0009 11 6 8.2758 3.8727 1.1974 12 6 9.6520 3.7579 1.2002 13 6 10.3452 3.7036 -0.0020 14 8 11.6986 3.5973 -0.0026 15 6 12.2993 3.4344 -1.1987 16 1 11.7153 3.4755 -2.1063 17 6 13.6667 3.2142 -1.2635 18 7 14.3779 3.1637 -0.1578 19 14 14.4988 2.9878 -2.9205 20 1 14.9379 4.3086 -3.4383 21 1 15.6789 2.1000 -2.7646 22 1 13.5410 2.3751 -3.8758 23 6 9.6510 3.7586 -1.2036 24 6 8.2744 3.8677 -1.1997 25 6 3.9797 0.4370 1.2315 26 8 4.1735 -0.7544 1.1775 27 8 4.1598 1.0946 2.3876 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.5441 -0.5707 -1.2482 34 1 3.6662 0.9659 -2.1385 35 1 5.0740 0.3394 -1.2481 36 1 3.5612 3.3077 -0.0011 37 1 5.7629 4.5814 -0.8902 38 1 5.7631 4.5816 0.8897 39 1 7.7366 3.9203 2.1319 40 1 10.1891 3.7154 2.1363 41 1 15.3345 3.0093 -0.2032 42 1 10.1874 3.7170 -2.1402 43 1 7.7340 3.9110 -2.1338 44 1 4.4449 0.5725 3.1500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831613592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:54 Heat of formation + Delta-G solvation = -165.492650 kcal Electronic energy + Delta-G solvation = -29035.000054 eV Core-core repulsion = 24725.932696 eV Total energy + Delta-G solvation = -4309.067358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.11538 -39.51854 -38.77242 -38.38444 -36.57690 -36.19177 -35.45590 -32.54817 -31.97712 -30.65679 -30.10619 -27.91196 -26.79314 -26.15608 -25.07353 -24.61675 -21.94096 -21.70784 -20.31990 -20.04335 -18.34833 -17.94109 -17.53496 -17.41153 -16.88314 -16.70304 -16.16817 -15.91211 -15.31823 -15.11652 -14.68603 -14.45758 -14.40453 -14.04921 -13.86678 -13.65618 -13.47559 -13.34234 -12.84795 -12.74993 -12.65268 -12.40354 -12.22453 -12.07316 -11.82874 -11.67835 -11.52240 -11.47764 -11.23411 -10.82879 -10.74265 -10.71813 -10.58246 -10.39702 -10.27218 -9.73885 -9.41644 -9.28528 -8.78460 -8.11103 -7.12947 -6.40871 -3.99362 2.06033 2.24505 2.29379 2.55077 2.63873 2.94614 3.15379 3.17175 3.21892 3.53169 4.00541 4.15830 4.31945 4.55700 4.66593 4.82163 4.83896 4.93383 4.98432 5.11762 5.17377 5.20904 5.26918 5.31629 5.35544 5.54761 5.61136 5.67894 5.75636 5.88438 6.07485 6.16285 6.25651 6.44365 6.45631 6.50577 6.73967 6.95089 7.08928 7.25133 7.29854 7.40300 7.49066 7.82826 7.87807 8.04427 8.18656 9.04863 9.75420 10.77237 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.022041 B = 0.002258 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.073629 B =12397.483163 C =12611.162704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.062 3.938 4 C 0.197 3.803 5 C -0.154 4.154 6 N -0.727 5.727 7 C 0.516 3.484 8 O -0.507 6.507 9 C -0.075 4.075 10 C -0.173 4.173 11 C -0.058 4.058 12 C -0.192 4.192 13 C 0.157 3.843 14 O -0.178 6.178 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.233 4.233 24 C -0.055 4.055 25 C 0.487 3.513 26 O -0.496 6.496 27 O -0.514 6.514 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.404 0.596 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.846 1.051 0.115 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C -0.016 4.016 4 C 0.109 3.891 5 C -0.212 4.212 6 N -0.385 5.385 7 C 0.303 3.697 8 O -0.379 6.379 9 C -0.115 4.115 10 C -0.174 4.174 11 C -0.076 4.076 12 C -0.211 4.211 13 C 0.103 3.897 14 O -0.081 6.081 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.252 4.252 24 C -0.074 4.074 25 C 0.326 3.674 26 O -0.380 6.380 27 O -0.325 6.325 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.239 0.761 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.122 0.878 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -27.830 -0.010 0.009 27.830 hybrid contribution 0.036 0.103 -0.305 0.324 sum -27.795 0.094 -0.296 27.797 Atomic orbital electron populations 1.22820 0.79993 1.03427 1.00241 1.87977 1.20379 1.25734 1.95473 1.22574 0.90046 0.86583 1.02401 1.19923 0.92727 0.84314 0.92183 1.22118 1.04929 1.00833 0.93278 1.46029 1.07600 1.06445 1.78443 1.21189 0.80664 0.92963 0.74860 1.90771 1.60425 1.40393 1.46333 1.20381 0.94297 0.92699 1.04102 1.18600 0.91830 1.13223 0.93745 1.20400 0.93110 0.97807 0.96321 1.20156 0.93449 1.11296 0.96207 1.19390 0.84858 0.92124 0.93293 1.83978 1.13309 1.77886 1.32969 1.21327 0.91389 1.50839 0.83109 0.89077 1.25292 0.95486 0.96547 0.99275 1.70047 1.07307 1.45491 1.26963 0.85712 0.78977 0.78546 0.80190 1.19909 1.20269 1.19196 1.21104 0.94240 1.11455 0.98399 1.20500 0.93640 0.97112 0.96125 1.23294 0.73440 0.86370 0.84256 1.90708 1.46004 1.16427 1.84895 1.84487 1.80507 1.46622 1.20930 0.89039 0.93788 0.93575 0.91563 0.90623 0.89710 0.91142 0.89385 0.76105 0.88768 0.88643 0.87372 0.86575 0.92067 0.85598 0.87808 0.73280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.43 9.65 -35.23 -0.34 -3.77 16 3 C 0.06 0.44 4.91 37.16 0.18 0.62 16 4 C 0.20 2.08 0.86 -132.98 -0.11 1.96 16 5 C -0.15 -1.83 7.79 37.15 0.29 -1.54 16 6 N -0.73 -6.59 4.88 -48.69 -0.24 -6.82 16 7 C 0.52 6.73 7.15 -10.99 -0.08 6.65 16 8 O -0.51 -9.25 13.24 5.55 0.07 -9.18 16 9 C -0.08 -0.87 5.83 -29.04 -0.17 -1.04 16 10 C -0.17 -2.94 4.38 -104.57 -0.46 -3.40 16 11 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 12 C -0.19 -4.22 9.99 -39.40 -0.39 -4.61 16 13 C 0.16 3.94 6.65 -39.10 -0.26 3.68 16 14 O -0.18 -5.23 9.76 0.03 0.00 -5.23 16 15 C -0.39 -11.18 9.49 30.88 0.29 -10.89 16 16 H 0.09 2.42 5.20 -52.48 -0.27 2.15 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 19 Si 0.94 21.00 29.55 -169.99 -5.02 15.97 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 C -0.23 -5.23 9.17 -39.39 -0.36 -5.59 16 24 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 25 C 0.49 6.59 5.45 36.01 0.20 6.79 16 26 O -0.50 -8.38 16.85 -18.75 -0.32 -8.70 16 27 O -0.51 -5.72 13.03 -39.24 -0.51 -6.23 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 1.06 7.41 -51.93 -0.38 0.67 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.35 6.17 -51.93 -0.32 1.03 16 36 H 0.40 2.02 8.47 -40.82 -0.35 1.67 16 37 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 38 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 42 H 0.13 2.83 5.64 -52.48 -0.30 2.53 16 43 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.41 3.18 9.10 45.56 0.41 3.60 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -38.66 378.99 -5.49 -44.16 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.98 Total: 7.15 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -0.63 Total: -8.00 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.52 Total: -31.88 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -1.09 Total: -33.11 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.66 -5.49 -44.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831613592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.337 kcal (2) G-P(sol) polarization free energy of solvation -38.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds