Wall clock time and date at job start Tue Mar 31 2020 20:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00374 * 2 1 4 4 C 1.52998 * 109.47582 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46980 * 59.99754 * 4 3 2 6 6 N 1.46495 * 109.47156 * 179.97438 * 4 3 2 7 7 C 1.34778 * 120.00352 * 180.02562 * 6 4 3 8 8 O 1.21289 * 119.99598 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00467 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.47177 * 180.02562 * 9 7 6 11 11 C 1.38305 * 119.92619 * 269.72075 * 10 9 7 12 12 C 1.38097 * 120.06995 * 179.72301 * 11 10 9 13 13 C 1.38880 * 119.92861 * 0.57382 * 12 11 10 14 14 O 1.35749 * 120.06926 * 179.68046 * 13 12 11 15 15 C 1.34838 * 117.00038 * 174.48543 * 14 13 12 16 16 H 1.08006 * 119.99581 * 5.05980 * 15 14 13 17 17 C 1.38649 * 120.00205 * 185.05299 * 15 14 13 18 18 N 1.31562 * 119.99730 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46678 * 90.00430 * 19 17 15 21 21 H 1.48502 * 109.47275 * 210.00034 * 19 17 15 22 22 H 1.48500 * 109.47344 * 330.00750 * 19 17 15 23 23 C 1.38884 * 119.86005 * 359.70171 * 13 12 11 24 24 C 1.38098 * 119.93423 * 0.02562 * 23 13 12 25 25 C 1.50703 * 109.47157 * 299.99774 * 4 3 2 26 26 O 1.20826 * 119.99551 * 94.99508 * 25 4 3 27 27 O 1.34222 * 120.00055 * 275.00141 * 25 4 3 28 28 H 1.09004 * 109.47032 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46899 * 300.00209 * 1 2 3 30 30 H 1.09001 * 109.47174 * 60.00544 * 1 2 3 31 31 H 1.09009 * 109.47042 * 59.99553 * 3 2 1 32 32 H 1.09003 * 109.46717 * 300.00024 * 3 2 1 33 33 H 1.08998 * 109.47454 * 300.00024 * 5 4 3 34 34 H 1.09003 * 109.47269 * 60.00494 * 5 4 3 35 35 H 1.09001 * 109.47498 * 179.97438 * 5 4 3 36 36 H 0.97002 * 120.00144 * 359.97438 * 6 4 3 37 37 H 1.09003 * 109.46744 * 299.99793 * 9 7 6 38 38 H 1.08993 * 109.47696 * 59.99389 * 9 7 6 39 39 H 1.08002 * 119.96355 * 359.97438 * 11 10 9 40 40 H 1.08001 * 120.03782 * 180.27187 * 12 11 10 41 41 H 0.97005 * 119.99553 * 179.97438 * 18 17 15 42 42 H 1.08009 * 120.03305 * 179.97438 * 23 13 12 43 43 H 1.07998 * 119.96738 * 179.97438 * 24 23 13 44 44 H 0.96704 * 117.00534 * 179.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4251 -1.2482 6 7 4.1313 2.5229 0.0000 7 6 5.4717 2.6639 -0.0001 8 8 6.1846 1.6826 0.0008 9 6 6.0847 4.0406 -0.0001 10 6 7.5870 3.9216 -0.0009 11 6 8.2758 3.8727 1.1974 12 6 9.6520 3.7579 1.2002 13 6 10.3452 3.7036 -0.0020 14 8 11.6986 3.5973 -0.0026 15 6 12.2993 3.4344 -1.1987 16 1 11.7153 3.4755 -2.1063 17 6 13.6667 3.2142 -1.2635 18 7 14.3779 3.1637 -0.1578 19 14 14.4988 2.9878 -2.9205 20 1 14.9379 4.3086 -3.4383 21 1 15.6789 2.1000 -2.7646 22 1 13.5410 2.3751 -3.8758 23 6 9.6510 3.7586 -1.2036 24 6 8.2744 3.8677 -1.1997 25 6 3.9797 0.4370 1.2315 26 8 4.1735 -0.7544 1.1775 27 8 4.1598 1.0946 2.3876 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.5441 -0.5707 -1.2482 34 1 3.6662 0.9659 -2.1385 35 1 5.0740 0.3394 -1.2481 36 1 3.5612 3.3077 -0.0011 37 1 5.7629 4.5814 -0.8902 38 1 5.7631 4.5816 0.8897 39 1 7.7366 3.9203 2.1319 40 1 10.1891 3.7154 2.1363 41 1 15.3345 3.0093 -0.2032 42 1 10.1874 3.7170 -2.1402 43 1 7.7340 3.9110 -2.1338 44 1 4.4449 0.5725 3.1500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831613592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:53 Heat of formation + Delta-G solvation = -196.711793 kcal Electronic energy + Delta-G solvation = -29036.353818 eV Core-core repulsion = 24725.932696 eV Total energy + Delta-G solvation = -4310.421122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.05786 -40.88945 -40.21597 -39.03971 -38.21126 -37.17762 -36.42344 -34.40156 -33.28549 -31.86205 -31.70469 -28.50887 -28.19120 -27.15634 -26.63253 -25.47569 -23.61889 -22.95608 -21.57622 -21.00878 -19.83826 -19.29245 -18.86591 -18.34733 -18.31636 -17.27213 -16.82371 -16.77222 -16.56455 -16.38387 -16.10154 -15.88652 -15.69308 -15.51170 -15.21830 -14.96087 -14.65878 -14.47884 -14.38987 -14.11905 -13.64302 -13.50892 -13.28704 -13.09157 -12.95896 -12.74587 -12.71080 -12.55980 -12.45665 -12.28650 -12.26142 -12.21692 -12.12768 -11.69969 -11.16488 -10.89746 -10.73347 -10.73001 -10.32831 -9.74078 -8.88660 -8.47435 -6.15490 0.63817 0.67497 1.12238 1.33239 1.42953 1.51433 1.60302 1.79279 2.09835 2.17433 2.81071 2.96022 3.18817 3.52467 3.54117 3.60955 3.87432 4.08551 4.12644 4.18443 4.22470 4.38401 4.40584 4.53534 4.53989 4.60270 4.61338 4.70210 4.72308 4.76867 4.82959 4.90104 5.10960 5.15277 5.20182 5.24704 5.33108 5.56050 5.58662 5.73434 5.79913 6.03354 6.08104 6.25548 6.54825 6.90486 6.97178 7.29151 7.79171 8.76095 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.022041 B = 0.002258 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.073629 B =12397.483163 C =12611.162704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.064 3.936 4 C 0.195 3.805 5 C -0.150 4.150 6 N -0.699 5.699 7 C 0.517 3.483 8 O -0.567 6.567 9 C -0.072 4.072 10 C -0.145 4.145 11 C -0.057 4.057 12 C -0.209 4.209 13 C 0.110 3.890 14 O -0.235 6.235 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.026 4.026 18 N -0.922 5.922 19 Si 1.020 2.980 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.255 1.255 23 C -0.246 4.246 24 C -0.058 4.058 25 C 0.481 3.519 26 O -0.543 6.543 27 O -0.508 6.508 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.429 0.571 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.109 0.891 41 H 0.272 0.728 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.493 2.987 -1.193 33.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.012 4.012 4 C 0.106 3.894 5 C -0.207 4.207 6 N -0.358 5.358 7 C 0.306 3.694 8 O -0.445 6.445 9 C -0.111 4.111 10 C -0.147 4.147 11 C -0.075 4.075 12 C -0.228 4.228 13 C 0.060 3.940 14 O -0.142 6.142 15 C -0.489 4.489 16 H 0.117 0.883 17 C -0.223 4.223 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.184 1.184 21 H -0.196 1.196 22 H -0.179 1.179 23 C -0.265 4.265 24 C -0.076 4.076 25 C 0.322 3.678 26 O -0.432 6.432 27 O -0.321 6.321 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.270 0.730 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.164 0.836 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.160 0.840 44 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -32.601 1.996 -1.278 32.687 hybrid contribution 1.055 -0.477 0.242 1.183 sum -31.546 1.520 -1.036 31.599 Atomic orbital electron populations 1.22988 0.78199 1.03968 1.01751 1.87941 1.22401 1.27073 1.95813 1.22695 0.86981 0.86447 1.05123 1.19989 0.95290 0.84150 0.89931 1.22033 1.02194 1.01085 0.95432 1.45651 1.06638 1.06984 1.76540 1.21357 0.81568 0.92564 0.73953 1.90800 1.62065 1.42276 1.49328 1.20531 0.89606 0.92660 1.08337 1.19266 0.95347 1.07755 0.92286 1.20891 0.91559 0.96133 0.98872 1.20445 0.95349 1.11887 0.95150 1.19966 0.84098 0.94419 0.95482 1.83937 1.15594 1.81148 1.33523 1.21817 0.92212 1.51258 0.83616 0.88250 1.26631 0.95853 0.95954 1.03888 1.70197 1.07718 1.48286 1.29836 0.84573 0.77711 0.79125 0.74680 1.18367 1.19608 1.17914 1.21241 0.96160 1.11992 0.97091 1.20962 0.92111 0.95788 0.98733 1.24047 0.72210 0.86142 0.85377 1.90688 1.48194 1.18586 1.85691 1.84449 1.80033 1.46526 1.21047 0.89197 0.92572 0.91658 0.89465 0.87116 0.91151 0.88273 0.93251 0.73046 0.84407 0.84583 0.83568 0.87282 0.91876 0.86619 0.84048 0.71877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.46 9.65 -148.98 -1.44 -7.90 16 3 C 0.06 0.64 4.91 71.98 0.35 1.00 16 4 C 0.20 3.52 0.86 2.86 0.00 3.52 16 5 C -0.15 -3.33 7.79 71.98 0.56 -2.77 16 6 N -0.70 -9.17 4.88 -426.34 -2.08 -11.25 16 7 C 0.52 11.24 7.15 87.66 0.63 11.87 16 8 O -0.57 -19.68 13.24 -3.06 -0.04 -19.72 16 9 C -0.07 -1.22 5.83 29.10 0.17 -1.05 16 10 C -0.15 -4.42 4.38 -19.83 -0.09 -4.51 16 11 C -0.06 -1.96 9.69 22.25 0.22 -1.75 16 12 C -0.21 -9.47 9.99 22.39 0.22 -9.24 16 13 C 0.11 5.83 6.65 22.58 0.15 5.98 16 14 O -0.24 -14.88 9.76 -22.81 -0.22 -15.10 16 15 C -0.41 -25.15 9.49 67.92 0.64 -24.50 16 16 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 17 C -0.03 -1.55 5.49 84.83 0.47 -1.08 16 18 N -0.92 -58.59 13.67 21.61 0.30 -58.30 16 19 Si 1.02 44.58 29.55 68.60 2.03 46.61 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 23 C -0.25 -11.27 9.17 22.39 0.21 -11.06 16 24 C -0.06 -2.04 9.69 22.25 0.22 -1.82 16 25 C 0.48 12.36 5.45 71.24 0.39 12.75 16 26 O -0.54 -18.68 16.85 21.96 0.37 -18.31 16 27 O -0.51 -10.19 13.03 -51.34 -0.67 -10.86 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.07 1.75 7.41 -2.39 -0.02 1.73 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.50 6.17 -2.39 -0.01 1.49 16 36 H 0.43 1.35 8.47 -92.71 -0.79 0.56 16 37 H 0.14 1.32 8.08 -2.39 -0.02 1.30 16 38 H 0.14 1.38 8.08 -2.39 -0.02 1.36 16 39 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 40 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 41 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 42 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 43 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 44 H 0.42 5.99 9.10 -74.05 -0.67 5.31 16 Total: -1.00 -95.77 378.99 3.23 -92.54 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -0.40 Total: 23.52 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 5.38 Total: -21.24 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.78 Total: -69.55 kcal Atomic # 8 Polarization: -69.89 SS G_CDS: -2.00 Total: -71.88 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -95.77 3.23 -92.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831613592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.172 kcal (2) G-P(sol) polarization free energy of solvation -95.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds