Wall clock time and date at job start Tue Mar 31 2020 20:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00301 * 2 1 4 4 C 1.52996 * 109.47664 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46901 * 300.00016 * 4 3 2 6 6 N 1.46495 * 109.47276 * 179.97438 * 4 3 2 7 7 C 1.34783 * 119.99931 * 180.02562 * 6 4 3 8 8 O 1.21281 * 119.99796 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99878 * 180.02562 * 7 6 4 10 10 C 1.50699 * 109.46970 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96224 * 270.02075 * 10 9 7 12 12 C 1.38280 * 120.13484 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07150 * 359.67534 * 12 11 10 14 14 C 1.38861 * 119.92830 * 0.59673 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.69892 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96952 * 89.99515 * 10 9 7 25 25 C 1.50706 * 109.46848 * 59.99436 * 4 3 2 26 26 O 1.20824 * 120.00334 * 265.00596 * 25 4 3 27 27 O 1.34239 * 119.99743 * 85.00114 * 25 4 3 28 28 H 1.09001 * 109.47259 * 300.00700 * 1 2 3 29 29 H 1.09003 * 109.47172 * 60.00322 * 1 2 3 30 30 H 1.09004 * 109.47391 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47257 * 59.99411 * 3 2 1 32 32 H 1.09009 * 109.46801 * 299.99936 * 3 2 1 33 33 H 1.08997 * 109.47273 * 299.99174 * 5 4 3 34 34 H 1.09002 * 109.47630 * 60.00017 * 5 4 3 35 35 H 1.09004 * 109.46946 * 179.97438 * 5 4 3 36 36 H 0.97001 * 120.00257 * 0.02562 * 6 4 3 37 37 H 1.08996 * 109.47386 * 59.99804 * 9 7 6 38 38 H 1.08997 * 109.47038 * 299.99640 * 9 7 6 39 39 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 40 40 H 1.08007 * 119.96121 * 179.97438 * 12 11 10 41 41 H 1.08001 * 120.03709 * 180.32387 * 13 12 11 42 42 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.03594 * 0.04940 * 24 10 9 44 44 H 0.96698 * 116.99636 * 180.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9864 0.4257 1.2502 6 7 4.1313 2.5230 0.0000 7 6 5.4717 2.6639 -0.0001 8 8 6.1846 1.6827 -0.0001 9 6 6.0846 4.0406 -0.0001 10 6 7.5869 3.9216 -0.0009 11 6 8.2762 3.8664 1.1972 12 6 9.6547 3.7578 1.2006 13 6 10.3472 3.6972 0.0071 14 6 9.6586 3.7581 -1.1972 15 8 10.3369 3.7051 -2.3719 16 6 11.6833 3.7151 -2.3023 17 1 12.1747 3.6815 -1.3412 18 6 12.4373 3.7685 -3.4648 19 7 13.7510 3.7787 -3.3968 20 14 11.5874 3.8273 -5.1272 21 1 11.3495 5.2417 -5.5118 22 1 12.4484 3.1753 -6.1466 23 1 10.2890 3.1115 -5.0451 24 6 8.2739 3.8673 -1.1974 25 6 3.9806 0.4365 -1.2295 26 8 4.1744 -0.7549 -1.1749 27 8 4.1617 1.0937 -2.3859 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.6645 0.9668 2.1399 34 1 3.5431 -0.5701 1.2503 35 1 5.0730 0.3393 1.2504 36 1 3.5611 3.3078 -0.0003 37 1 5.7631 4.5815 0.8898 38 1 5.7630 4.5815 -0.8901 39 1 7.7366 3.9091 2.1318 40 1 10.1901 3.7153 2.1377 41 1 11.4234 3.6071 0.0105 42 1 14.2784 3.8157 -4.2100 43 1 7.7353 3.9108 -2.1325 44 1 4.4473 0.5711 -3.1477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833721626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:57 Heat of formation + Delta-G solvation = -163.252469 kcal Electronic energy + Delta-G solvation = -29294.980508 eV Core-core repulsion = 24986.010292 eV Total energy + Delta-G solvation = -4308.970216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14021 -39.60603 -38.89056 -38.40605 -36.70970 -36.17885 -35.51738 -32.59666 -32.30061 -31.15012 -29.39433 -27.93930 -27.17011 -26.23671 -25.13020 -24.64101 -22.06681 -21.52836 -20.38632 -20.09184 -18.36904 -17.75111 -17.57379 -17.41803 -16.97130 -16.71750 -16.16720 -15.90239 -15.46886 -15.14304 -15.06424 -14.58700 -14.50178 -13.95924 -13.89969 -13.67261 -13.54573 -13.44533 -12.88455 -12.70662 -12.56467 -12.37595 -12.25609 -12.15552 -12.08620 -11.69853 -11.68422 -11.48921 -11.28454 -10.83299 -10.78348 -10.72945 -10.69136 -10.27972 -10.13096 -9.83336 -9.45909 -9.35497 -8.83481 -8.12505 -7.32482 -6.37239 -4.03785 1.94956 2.12663 2.31411 2.49591 2.57578 2.93276 3.24818 3.27702 3.43725 3.50249 4.13860 4.27485 4.30307 4.47091 4.65459 4.73035 4.81157 4.83183 4.88995 4.97484 5.08297 5.15235 5.20354 5.21421 5.33836 5.49517 5.55332 5.59560 5.71067 5.86278 6.03153 6.12238 6.15201 6.28407 6.46175 6.50160 6.55474 6.81690 7.12404 7.19523 7.23715 7.35315 7.64060 7.83895 7.84850 8.08408 8.10638 8.98313 9.61414 10.70628 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.002709 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.643312 B =10333.194494 C =11309.850529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.061 3.939 4 C 0.197 3.803 5 C -0.153 4.153 6 N -0.725 5.725 7 C 0.520 3.480 8 O -0.505 6.505 9 C -0.089 4.089 10 C -0.037 4.037 11 C -0.187 4.187 12 C -0.076 4.076 13 C -0.216 4.216 14 C 0.160 3.840 15 O -0.219 6.219 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.881 5.881 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.173 4.173 25 C 0.486 3.514 26 O -0.495 6.495 27 O -0.513 6.513 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.405 0.595 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.279 0.721 43 H 0.114 0.886 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.032 -0.085 8.157 29.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C -0.016 4.016 4 C 0.109 3.891 5 C -0.211 4.211 6 N -0.383 5.383 7 C 0.308 3.692 8 O -0.378 6.378 9 C -0.129 4.129 10 C -0.038 4.038 11 C -0.206 4.206 12 C -0.095 4.095 13 C -0.236 4.236 14 C 0.108 3.892 15 O -0.125 6.125 16 C -0.463 4.463 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.519 5.519 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.192 4.192 25 C 0.325 3.675 26 O -0.380 6.380 27 O -0.325 6.325 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.240 0.760 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.132 0.868 44 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -27.307 -1.120 8.137 28.515 hybrid contribution -0.387 0.271 -1.232 1.319 sum -27.693 -0.849 6.906 28.554 Atomic orbital electron populations 1.22821 0.79969 1.03435 1.00252 1.87976 1.20395 1.25691 1.95476 1.22569 0.89983 0.86621 1.02443 1.19929 0.92782 0.84100 0.92277 1.22114 1.04883 1.00874 0.93236 1.45954 1.07450 1.06627 1.78310 1.20864 0.80866 0.92463 0.75049 1.90784 1.60404 1.40287 1.46309 1.20560 0.93913 0.93540 1.04892 1.18624 0.91811 1.00274 0.93100 1.20413 0.94194 1.09881 0.96110 1.20737 0.93853 0.97852 0.97010 1.21305 1.01198 1.09143 0.91921 1.19012 0.91124 0.93186 0.85872 1.83566 1.21284 1.81034 1.26568 1.20762 0.76767 1.51939 0.96880 0.87660 1.24456 0.94752 0.95783 0.99059 1.69647 1.03950 1.48324 1.30021 0.86186 0.80077 0.78913 0.81757 1.19923 1.20829 1.18383 1.19940 0.91570 1.10412 0.97307 1.23279 0.73504 0.86380 0.84306 1.90707 1.46011 1.16405 1.84901 1.84485 1.80406 1.46650 1.20971 0.93586 0.93761 0.89031 0.90613 0.91505 0.91127 0.89656 0.89419 0.75996 0.88014 0.87914 0.87692 0.87172 0.85003 0.91123 0.86814 0.73103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.40 9.65 -35.23 -0.34 -3.74 16 3 C 0.06 0.43 4.91 37.16 0.18 0.62 16 4 C 0.20 2.06 0.86 -132.97 -0.11 1.95 16 5 C -0.15 -1.75 7.79 37.16 0.29 -1.46 16 6 N -0.73 -6.48 4.88 -48.69 -0.24 -6.72 16 7 C 0.52 6.72 7.14 -10.98 -0.08 6.65 16 8 O -0.51 -9.12 13.24 5.56 0.07 -9.05 16 9 C -0.09 -1.03 5.83 -29.04 -0.17 -1.20 16 10 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 11 C -0.19 -3.18 9.70 -39.53 -0.38 -3.57 16 12 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.22 -4.85 9.17 -39.39 -0.36 -5.21 16 14 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 15 O -0.22 -5.96 8.59 0.05 0.00 -5.96 16 16 C -0.39 -11.19 9.95 30.89 0.31 -10.88 16 17 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 18 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 19 N -0.88 -25.90 13.96 55.48 0.77 -25.13 16 20 Si 0.91 22.12 28.62 -169.99 -4.86 17.26 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.17 -3.53 9.64 -39.40 -0.38 -3.91 16 25 C 0.49 6.71 5.44 36.01 0.20 6.91 16 26 O -0.50 -8.48 16.85 -18.75 -0.32 -8.79 16 27 O -0.51 -6.10 13.02 -39.28 -0.51 -6.61 16 28 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.03 7.41 -51.93 -0.38 0.65 16 35 H 0.09 1.29 6.17 -51.93 -0.32 0.97 16 36 H 0.40 1.95 8.47 -40.82 -0.35 1.61 16 37 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.10 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.13 3.09 5.64 -52.49 -0.30 2.79 16 42 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 44 H 0.41 3.61 9.10 45.56 0.41 4.02 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -37.84 377.87 -5.33 -43.17 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.00 Total: 6.37 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -0.61 Total: -6.50 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.54 Total: -31.84 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.09 Total: -34.15 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.86 Total: 17.26 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.84 -5.33 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833721626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.082 kcal (2) G-P(sol) polarization free energy of solvation -37.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds