Wall clock time and date at job start Tue Mar 31 2020 20:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00404 * 2 1 4 4 C 1.52995 * 109.47467 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47056 * 59.99839 * 4 3 2 6 6 N 1.46495 * 109.47496 * 180.02562 * 4 3 2 7 7 C 1.34782 * 120.00054 * 180.02562 * 6 4 3 8 8 O 1.21275 * 120.00237 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99717 * 180.02562 * 7 6 4 10 10 C 1.50697 * 109.46913 * 179.97438 * 9 7 6 11 11 C 1.38318 * 119.97020 * 269.72273 * 10 9 7 12 12 C 1.38282 * 120.13997 * 179.76684 * 11 10 9 13 13 C 1.38119 * 120.07056 * 0.51197 * 12 11 10 14 14 C 1.38863 * 119.92521 * 359.74639 * 13 12 11 15 15 O 1.35749 * 120.06340 * 179.97438 * 14 13 12 16 16 C 1.34829 * 117.00538 * 354.48236 * 15 14 13 17 17 H 1.08000 * 119.99762 * 5.06329 * 16 15 14 18 18 C 1.38655 * 120.00237 * 185.05994 * 16 15 14 19 19 N 1.31564 * 119.99680 * 179.97438 * 18 16 15 20 20 Si 1.86790 * 120.00076 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47023 * 90.00172 * 20 18 16 22 22 H 1.48503 * 109.47116 * 209.99442 * 20 18 16 23 23 H 1.48499 * 109.47121 * 330.00060 * 20 18 16 24 24 C 1.38087 * 119.96455 * 90.00135 * 10 9 7 25 25 C 1.50701 * 109.47183 * 300.00623 * 4 3 2 26 26 O 1.20827 * 120.00317 * 94.99759 * 25 4 3 27 27 O 1.34230 * 119.99917 * 274.99227 * 25 4 3 28 28 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46596 * 299.99629 * 1 2 3 30 30 H 1.08998 * 109.46868 * 59.99224 * 1 2 3 31 31 H 1.08999 * 109.46965 * 60.00236 * 3 2 1 32 32 H 1.08996 * 109.47159 * 300.00610 * 3 2 1 33 33 H 1.09000 * 109.47190 * 300.00590 * 5 4 3 34 34 H 1.09006 * 109.46435 * 60.00010 * 5 4 3 35 35 H 1.08997 * 109.47089 * 179.97438 * 5 4 3 36 36 H 0.97004 * 119.99871 * 0.02562 * 6 4 3 37 37 H 1.08996 * 109.47526 * 300.00048 * 9 7 6 38 38 H 1.08999 * 109.47214 * 60.00315 * 9 7 6 39 39 H 1.08005 * 119.92808 * 0.02562 * 11 10 9 40 40 H 1.08003 * 119.96368 * 180.26180 * 12 11 10 41 41 H 1.08000 * 120.03690 * 179.77149 * 13 12 11 42 42 H 0.97002 * 119.99838 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.03109 * 359.95916 * 24 10 9 44 44 H 0.96703 * 117.00171 * 179.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4250 -1.2483 6 7 4.1314 2.5228 0.0013 7 6 5.4719 2.6636 0.0014 8 8 6.1847 1.6824 0.0005 9 6 6.0849 4.0403 0.0026 10 6 7.5871 3.9212 0.0031 11 6 8.2759 3.8716 1.2016 12 6 9.6540 3.7575 1.2062 13 6 10.3479 3.7034 0.0132 14 6 9.6597 3.7584 -1.1917 15 8 10.3390 3.7060 -2.3658 16 6 11.6854 3.7160 -2.2952 17 1 12.1759 3.6815 -1.3337 18 6 12.4402 3.7706 -3.4570 19 7 13.7540 3.7809 -3.3879 20 14 11.5918 3.8309 -5.1200 21 1 11.3541 5.2458 -5.5034 22 1 12.4537 3.1801 -6.1393 23 1 10.2933 3.1150 -5.0395 24 6 8.2751 3.8676 -1.1930 25 6 3.9797 0.4368 1.2313 26 8 4.1735 -0.7546 1.1773 27 8 4.1600 1.0943 2.3876 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.5440 -0.5707 -1.2483 34 1 3.6661 0.9658 -2.1385 35 1 5.0740 0.3393 -1.2481 36 1 3.5613 3.3076 0.0016 37 1 5.7633 4.5821 -0.8868 38 1 5.7633 4.5804 0.8931 39 1 7.7359 3.9178 2.1358 40 1 10.1886 3.7147 2.1436 41 1 11.4245 3.6180 0.0174 42 1 14.2821 3.8195 -4.2007 43 1 7.7371 3.9103 -2.1284 44 1 4.4450 0.5720 3.1499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833721630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:59 Heat of formation + Delta-G solvation = -163.219026 kcal Electronic energy + Delta-G solvation = -29230.187085 eV Core-core repulsion = 24921.218319 eV Total energy + Delta-G solvation = -4308.968766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16170 -39.62195 -38.90052 -38.41306 -36.71117 -36.23060 -35.52239 -32.59645 -32.29893 -31.15079 -29.39199 -27.93008 -27.16963 -26.23539 -25.12871 -24.66950 -22.06720 -21.53315 -20.39849 -20.10684 -18.39790 -17.75301 -17.57736 -17.45287 -16.96721 -16.71721 -16.17363 -15.91421 -15.48542 -15.15262 -15.05336 -14.71420 -14.35602 -14.04453 -13.84114 -13.73454 -13.52208 -13.45314 -12.86384 -12.73560 -12.55536 -12.37469 -12.23916 -12.16366 -12.06145 -11.70488 -11.68945 -11.53892 -11.28353 -10.83013 -10.79177 -10.74492 -10.69443 -10.28216 -10.13007 -9.83209 -9.46445 -9.35429 -8.83387 -8.12601 -7.32448 -6.37170 -4.03788 1.94240 2.09965 2.31187 2.48397 2.57548 2.89866 3.24940 3.27795 3.43850 3.49935 4.13809 4.27565 4.30144 4.47009 4.65510 4.72617 4.81411 4.83111 4.89374 4.96765 5.08157 5.14245 5.20273 5.21906 5.33008 5.50872 5.57626 5.62139 5.70408 5.86842 6.03654 6.14793 6.16638 6.28067 6.40679 6.49355 6.55366 6.81609 7.12320 7.19438 7.23825 7.35310 7.64030 7.79125 7.84853 8.08436 8.10459 8.98345 9.61337 10.70678 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.017680 B = 0.002592 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.309040 B =10801.737616 C =11587.589029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.061 3.939 4 C 0.198 3.802 5 C -0.155 4.155 6 N -0.725 5.725 7 C 0.521 3.479 8 O -0.505 6.505 9 C -0.089 4.089 10 C -0.037 4.037 11 C -0.187 4.187 12 C -0.076 4.076 13 C -0.217 4.217 14 C 0.160 3.840 15 O -0.219 6.219 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.881 5.881 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.174 4.174 25 C 0.487 3.513 26 O -0.495 6.495 27 O -0.514 6.514 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.405 0.595 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.279 0.721 43 H 0.114 0.886 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.047 -0.091 8.716 29.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C -0.016 4.016 4 C 0.109 3.891 5 C -0.213 4.213 6 N -0.383 5.383 7 C 0.308 3.692 8 O -0.378 6.378 9 C -0.129 4.129 10 C -0.038 4.038 11 C -0.206 4.206 12 C -0.094 4.094 13 C -0.236 4.236 14 C 0.108 3.892 15 O -0.124 6.124 16 C -0.464 4.464 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.519 5.519 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.193 4.193 25 C 0.326 3.674 26 O -0.379 6.379 27 O -0.326 6.326 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.240 0.760 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.132 0.868 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -27.322 -1.127 7.993 28.489 hybrid contribution -0.385 0.269 -0.060 0.473 sum -27.707 -0.858 7.932 28.833 Atomic orbital electron populations 1.22822 0.79961 1.03438 1.00255 1.87976 1.20402 1.25691 1.95477 1.22568 0.89969 0.86625 1.02449 1.19936 0.92788 0.84124 0.92228 1.22133 1.04979 1.00873 0.93266 1.45955 1.07451 1.06625 1.78311 1.20863 0.80863 0.92462 0.75044 1.90782 1.60405 1.40290 1.46307 1.20561 0.93912 0.93540 1.04895 1.18624 0.91807 1.00254 0.93100 1.20419 0.94201 1.09796 0.96147 1.20738 0.93851 0.97838 0.97019 1.21305 1.01176 1.09169 0.91920 1.19007 0.91118 0.93177 0.85873 1.83565 1.21264 1.81033 1.26576 1.20761 0.76767 1.51939 0.96888 0.87666 1.24459 0.94750 0.95779 0.99073 1.69653 1.03929 1.48318 1.30050 0.86183 0.80083 0.78905 0.81744 1.19935 1.20828 1.18358 1.19935 0.91574 1.10535 0.97271 1.23298 0.73455 0.86389 0.84230 1.90711 1.45943 1.16403 1.84877 1.84491 1.80546 1.46608 1.20922 0.89029 0.93788 0.93551 0.91552 0.90558 0.89643 0.91026 0.89342 0.75988 0.87975 0.87946 0.87699 0.87193 0.84999 0.91124 0.86804 0.73327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.40 9.65 -35.23 -0.34 -3.74 16 3 C 0.06 0.43 4.91 37.16 0.18 0.62 16 4 C 0.20 2.06 0.86 -132.97 -0.11 1.95 16 5 C -0.15 -1.86 7.79 37.16 0.29 -1.57 16 6 N -0.73 -6.47 4.87 -48.68 -0.24 -6.71 16 7 C 0.52 6.72 7.15 -10.98 -0.08 6.65 16 8 O -0.51 -9.12 13.24 5.56 0.07 -9.04 16 9 C -0.09 -1.03 5.83 -29.04 -0.17 -1.20 16 10 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 11 C -0.19 -3.21 9.70 -39.54 -0.38 -3.59 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.22 -4.85 9.17 -39.39 -0.36 -5.21 16 14 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 15 O -0.22 -5.93 8.59 0.06 0.00 -5.93 16 16 C -0.39 -11.17 9.95 30.89 0.31 -10.87 16 17 H 0.11 3.09 5.44 -52.49 -0.29 2.81 16 18 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 19 N -0.88 -25.88 13.96 55.48 0.77 -25.10 16 20 Si 0.91 22.06 28.62 -169.99 -4.86 17.20 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.17 -3.52 9.65 -39.40 -0.38 -3.90 16 25 C 0.49 6.42 5.45 36.01 0.20 6.62 16 26 O -0.49 -8.19 16.85 -18.75 -0.32 -8.51 16 27 O -0.51 -5.45 13.02 -39.26 -0.51 -5.96 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 1.07 7.41 -51.93 -0.38 0.69 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.37 6.16 -51.93 -0.32 1.05 16 36 H 0.40 1.95 8.47 -40.82 -0.35 1.61 16 37 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.10 0.87 8.08 -51.93 -0.42 0.46 16 39 H 0.10 1.51 8.06 -52.48 -0.42 1.09 16 40 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.13 3.09 5.64 -52.49 -0.30 2.79 16 42 H 0.28 7.55 8.31 -40.82 -0.34 7.22 16 43 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.41 2.93 9.10 45.56 0.41 3.34 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -37.75 377.86 -5.33 -43.08 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.00 Total: 5.94 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.61 Total: -6.92 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.54 Total: -31.81 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.09 Total: -33.18 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.86 Total: 17.20 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.75 -5.33 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833721630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.140 kcal (2) G-P(sol) polarization free energy of solvation -37.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds