Wall clock time and date at job start Tue Mar 31 2020 20:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 O 1.42905 * 109.46626 * 180.02562 * 3 2 1 5 5 C 1.35704 * 116.99925 * 179.97438 * 4 3 2 6 6 C 1.39195 * 119.85846 * 0.02562 * 5 4 3 7 7 C 1.36522 * 120.37912 * 180.02562 * 6 5 4 8 8 C 1.39902 * 120.08368 * 0.02562 * 7 6 5 9 9 C 1.47147 * 120.14256 * 179.97438 * 8 7 6 10 10 O 1.21546 * 120.00200 * 180.02562 * 9 8 7 11 11 O 1.34788 * 120.00033 * 0.02562 * 9 8 7 12 12 C 1.45196 * 117.00051 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47098 * 179.97438 * 12 11 9 14 14 O 1.21287 * 119.99932 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99750 * 180.02562 * 13 12 11 16 16 C 1.37100 * 119.99517 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00083 * 359.97438 * 16 15 13 18 18 C 1.38951 * 119.99806 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99816 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99973 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47060 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47357 * 119.99632 * 20 18 16 23 23 H 1.48504 * 109.46758 * 239.99565 * 20 18 16 24 24 C 1.40379 * 119.71741 * 359.97438 * 8 7 6 25 25 O 1.35638 * 120.18969 * 180.02562 * 24 8 7 26 26 C 1.42903 * 117.00396 * 179.97438 * 25 24 8 27 27 C 1.38475 * 119.62602 * 0.27401 * 24 8 7 28 28 H 1.08995 * 109.47126 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46974 * 299.99735 * 1 2 3 30 30 H 1.08996 * 109.47632 * 59.99381 * 1 2 3 31 31 H 1.09004 * 109.46470 * 240.00173 * 2 1 3 32 32 H 1.08996 * 109.47632 * 120.00618 * 2 1 3 33 33 H 1.08994 * 109.46954 * 60.00984 * 3 2 1 34 34 H 1.08998 * 109.47492 * 299.99932 * 3 2 1 35 35 H 1.08001 * 119.80754 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.95355 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47510 * 300.00458 * 12 11 9 38 38 H 1.09006 * 109.47244 * 60.00147 * 12 11 9 39 39 H 0.96996 * 120.00468 * 359.97438 * 15 13 12 40 40 H 0.97005 * 119.99807 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.47382 * 179.97438 * 26 25 24 42 42 H 1.09001 * 109.46938 * 59.99691 * 26 25 24 43 43 H 1.09004 * 109.46926 * 299.99812 * 26 25 24 44 44 H 1.07997 * 120.04086 * 179.73063 * 27 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0851 2.6516 -0.0012 6 6 3.3242 3.8171 -0.0007 7 6 3.9329 5.0391 -0.0019 8 6 5.3292 5.1270 -0.0041 9 6 5.9867 6.4434 -0.0059 10 8 7.1999 6.5168 -0.0083 11 8 5.2435 7.5679 -0.0049 12 6 5.9594 8.8311 -0.0062 13 6 4.9709 9.9687 -0.0054 14 8 3.7803 9.7375 -0.0034 15 7 5.4100 11.2430 -0.0069 16 6 4.5107 12.2778 -0.0057 17 1 3.4506 12.0719 -0.0039 18 6 4.9633 13.5915 -0.0078 19 7 6.2533 13.8420 -0.0104 20 14 3.7381 15.0016 -0.0054 21 1 2.3566 14.4569 -0.0019 22 1 3.9450 15.8351 1.2061 23 1 3.9386 15.8336 -1.2190 24 6 6.1003 3.9540 -0.0046 25 8 7.4547 4.0280 -0.0063 26 6 8.1721 2.7921 -0.0061 27 6 5.4705 2.7207 -0.0087 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 2.2460 3.7543 0.0006 36 1 3.3358 5.9390 -0.0019 37 1 6.5871 8.8940 0.8827 38 1 6.5842 8.8938 -0.8972 39 1 6.3622 11.4279 -0.0081 40 1 6.5693 14.7591 -0.0115 41 1 9.2433 2.9937 -0.0080 42 1 7.9090 2.2192 -0.8953 43 1 7.9111 2.2206 0.8847 44 1 6.0572 1.8140 -0.0135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837889873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:13 Heat of formation + Delta-G solvation = -195.143959 kcal Electronic energy + Delta-G solvation = -28013.756888 eV Core-core repulsion = 23703.403753 eV Total energy + Delta-G solvation = -4310.353135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.03687 -41.13990 -40.25357 -39.85727 -37.75531 -37.31355 -36.02169 -34.86594 -33.41609 -32.05301 -31.39327 -29.96777 -28.23594 -27.62120 -26.60225 -24.80201 -23.66688 -22.43751 -21.82572 -21.41213 -20.07036 -19.92014 -19.05411 -18.16399 -17.70922 -17.58277 -17.40071 -17.34226 -17.16946 -16.71181 -16.56088 -15.87686 -15.79061 -15.64847 -15.41449 -15.07133 -14.70201 -14.39383 -14.03305 -14.02021 -13.73871 -13.56940 -13.45140 -13.41017 -12.98132 -12.93742 -12.55284 -12.54462 -12.46078 -12.41916 -12.10180 -11.89592 -11.82271 -11.80819 -11.57951 -11.55469 -11.50276 -10.50732 -10.11599 -9.80370 -9.35467 -8.51933 -6.02637 -0.36263 0.23850 1.34872 1.36319 1.45251 1.45785 1.59817 1.86764 1.89629 2.24063 2.30710 2.59328 3.06026 3.13419 3.57408 3.69986 3.85921 3.89371 3.96730 4.02426 4.06817 4.09771 4.16489 4.22100 4.30946 4.37337 4.37753 4.44576 4.56778 4.62470 4.73609 4.77957 4.84221 5.06032 5.13521 5.15511 5.20302 5.29796 5.32895 5.37836 5.41381 5.89441 6.13617 6.27949 6.46462 6.71824 7.02950 7.39855 7.93023 8.65424 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.002156 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.711363 B =12986.761968 C =14898.118486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.043 3.957 4 O -0.312 6.312 5 C 0.212 3.788 6 C -0.251 4.251 7 C 0.017 3.983 8 C -0.228 4.228 9 C 0.506 3.494 10 O -0.523 6.523 11 O -0.341 6.341 12 C 0.073 3.927 13 C 0.439 3.561 14 O -0.615 6.615 15 N -0.558 5.558 16 C -0.337 4.337 17 H 0.085 0.915 18 C -0.011 4.011 19 N -0.916 5.916 20 Si 1.000 3.000 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.270 1.270 24 C 0.225 3.775 25 O -0.307 6.307 26 C 0.010 3.990 27 C -0.259 4.259 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.400 0.600 40 H 0.281 0.719 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -29.551 0.017 29.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.031 4.031 4 O -0.225 6.225 5 C 0.164 3.836 6 C -0.269 4.269 7 C -0.002 4.002 8 C -0.230 4.230 9 C 0.353 3.647 10 O -0.414 6.414 11 O -0.257 6.257 12 C -0.004 4.004 13 C 0.226 3.774 14 O -0.502 6.502 15 N -0.196 5.196 16 C -0.466 4.466 17 H 0.103 0.897 18 C -0.211 4.211 19 N -0.556 5.556 20 Si 0.823 3.177 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.195 1.195 24 C 0.177 3.823 25 O -0.219 6.219 26 C -0.084 4.084 27 C -0.278 4.278 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.181 0.819 36 H 0.163 0.837 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.234 0.766 40 H 0.090 0.910 41 H 0.134 0.866 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.865 -29.519 0.016 29.771 hybrid contribution 0.284 1.106 0.002 1.142 sum -3.581 -28.413 0.018 28.638 Atomic orbital electron populations 1.21700 0.93101 1.03202 1.02701 1.21496 0.96903 0.93586 1.03755 1.23338 0.76098 1.00483 1.03155 1.86017 1.23695 1.26103 1.86669 1.19004 0.91510 0.84694 0.88390 1.21122 1.02044 0.90777 1.12966 1.20971 0.91487 0.99376 0.88339 1.18408 0.94096 0.87552 1.22967 1.21292 0.85507 0.85097 0.72781 1.90829 1.15322 1.87932 1.47309 1.86576 1.40628 1.14213 1.84268 1.22487 0.93095 0.79735 1.05119 1.20029 0.89221 0.84090 0.84076 1.90507 1.18406 1.84579 1.56702 1.41745 1.09984 1.03750 1.64073 1.19775 0.90897 0.85372 1.50539 0.89658 1.26165 0.98710 1.00575 0.95689 1.69687 1.14085 1.22566 1.49250 0.84769 0.77656 0.76865 0.78409 1.19463 1.19455 1.19463 1.18693 0.83328 0.91637 0.88684 1.86353 1.14328 1.35102 1.86072 1.23547 0.97570 0.84170 1.03132 1.20432 0.93034 0.97041 1.17312 0.90979 0.91980 0.91973 0.90799 0.90797 0.90433 0.90441 0.81916 0.83674 0.87863 0.87877 0.76604 0.90983 0.86569 0.90616 0.90616 0.81340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 71.98 0.71 -0.16 16 2 C -0.12 -0.96 6.30 30.59 0.19 -0.77 16 3 C 0.04 0.46 4.73 71.98 0.34 0.80 16 4 O -0.31 -5.04 10.12 -90.24 -0.91 -5.95 16 5 C 0.21 4.08 6.69 22.61 0.15 4.23 16 6 C -0.25 -4.98 8.96 22.10 0.20 -4.78 16 7 C 0.02 0.44 9.55 22.27 0.21 0.65 16 8 C -0.23 -7.05 5.89 -20.01 -0.12 -7.17 16 9 C 0.51 19.06 7.88 70.16 0.55 19.62 16 10 O -0.52 -21.31 14.95 26.70 0.40 -20.91 16 11 O -0.34 -14.01 8.99 -50.60 -0.46 -14.46 16 12 C 0.07 2.99 5.96 71.24 0.42 3.42 16 13 C 0.44 22.31 7.86 87.66 0.69 23.00 16 14 O -0.62 -35.73 16.08 15.75 0.25 -35.48 16 15 N -0.56 -29.49 5.29 -306.98 -1.62 -31.11 16 16 C -0.34 -19.24 9.68 84.04 0.81 -18.42 16 17 H 0.09 5.15 7.16 -2.91 -0.02 5.13 16 18 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 19 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 20 Si 1.00 42.56 29.55 68.60 2.03 44.59 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 C 0.23 5.97 6.70 22.85 0.15 6.12 16 25 O -0.31 -8.27 8.57 -68.57 -0.59 -8.86 16 26 C 0.01 0.14 9.81 113.37 1.11 1.25 16 27 C -0.26 -5.21 8.97 22.44 0.20 -5.00 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.34 8.14 -2.38 -0.02 0.33 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.71 7.65 -2.39 -0.02 0.70 16 34 H 0.08 0.71 7.65 -2.39 -0.02 0.70 16 35 H 0.16 2.30 6.26 -2.91 -0.02 2.28 16 36 H 0.15 4.00 7.60 -2.91 -0.02 3.98 16 37 H 0.10 3.86 8.14 -2.39 -0.02 3.85 16 38 H 0.10 3.86 8.14 -2.38 -0.02 3.84 16 39 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 40 H 0.28 14.06 8.31 -92.70 -0.77 13.29 16 41 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 0.84 7.65 -2.39 -0.02 0.83 16 43 H 0.08 0.85 7.68 -2.38 -0.02 0.83 16 44 H 0.17 2.44 6.31 -2.91 -0.02 2.42 16 Total: -1.00 -75.21 381.59 5.80 -69.42 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.31 Total: 29.25 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 6.11 Total: 22.67 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -1.34 Total: -80.27 kcal Atomic # 8 Polarization: -84.36 SS G_CDS: -1.30 Total: -85.67 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -75.21 5.80 -69.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837889873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.729 kcal (2) G-P(sol) polarization free energy of solvation -75.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds