Wall clock time and date at job start Tue Mar 31 2020 20:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 108.54147 * 2 1 4 4 C 1.54888 * 108.41981 * 241.91067 * 2 1 3 5 5 N 1.47198 * 115.86940 * 194.84069 * 4 2 1 6 6 C 1.34774 * 119.03169 * 137.13806 * 5 4 2 7 7 O 1.21574 * 120.00129 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99954 * 180.02562 * 6 5 4 9 9 C 1.39461 * 119.99857 * 175.63274 * 8 6 5 10 10 C 1.38637 * 119.64990 * 185.63254 * 9 8 6 11 11 C 1.40815 * 118.67934 * 179.97438 * 10 9 8 12 12 C 1.41543 * 121.00263 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00125 * 197.95636 * 12 11 10 14 14 C 1.40027 * 120.00103 * 17.94581 * 12 11 10 15 15 N 1.30748 * 119.99685 * 19.16762 * 14 12 11 16 16 Si 1.86799 * 120.00470 * 199.16233 * 14 12 11 17 17 H 1.48501 * 109.46555 * 90.00237 * 16 14 12 18 18 H 1.48500 * 109.47242 * 210.00104 * 16 14 12 19 19 H 1.48493 * 109.47105 * 330.00558 * 16 14 12 20 20 C 1.41173 * 118.00261 * 359.97438 * 11 10 9 21 21 C 1.36590 * 119.12479 * 0.02562 * 20 11 10 22 22 N 1.32064 * 121.25833 * 359.73936 * 21 20 11 23 23 C 1.42856 * 121.94089 * 317.15785 * 5 4 2 24 24 C 1.53960 * 108.11730 * 95.72566 * 23 5 4 25 25 S 1.74747 * 112.57140 * 279.21053 * 24 23 5 26 26 O 1.42104 * 109.46865 * 303.92568 * 25 24 23 27 27 C 1.49606 * 108.68570 * 118.04790 * 2 1 3 28 28 H 1.09003 * 109.46633 * 301.95942 * 1 2 3 29 29 H 1.09002 * 109.47197 * 61.95149 * 1 2 3 30 30 H 1.09000 * 109.47406 * 181.95594 * 1 2 3 31 31 H 1.09002 * 108.15629 * 73.23255 * 4 2 1 32 32 H 1.08998 * 108.14637 * 316.43799 * 4 2 1 33 33 H 0.97001 * 120.00165 * 355.63369 * 8 6 5 34 34 H 1.08003 * 120.65935 * 359.97438 * 10 9 8 35 35 H 0.97003 * 120.00036 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.43407 * 179.97438 * 20 11 10 37 37 H 1.07995 * 119.36821 * 180.02562 * 21 20 11 38 38 H 1.08999 * 109.73093 * 336.07175 * 23 5 4 39 39 H 1.08999 * 109.73246 * 215.38392 * 23 5 4 40 40 H 1.08993 * 108.86162 * 158.40693 * 24 23 5 41 41 H 1.08999 * 108.85995 * 40.00438 * 24 23 5 42 42 H 1.09002 * 109.32417 * 89.94386 * 27 2 1 43 43 H 1.08994 * 109.32929 * 330.29336 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8766 1.0334 0.0000 4 6 2.0194 -0.6919 -1.2964 5 7 3.4370 -1.0876 -1.3174 6 6 3.7721 -2.2938 -1.8166 7 8 2.9088 -3.0370 -2.2416 8 7 5.0642 -2.6762 -1.8448 9 6 5.4026 -3.9585 -2.2763 10 6 6.7190 -4.3852 -2.1923 11 6 7.0378 -5.6840 -2.6334 12 6 8.3656 -6.1702 -2.5696 13 1 8.6558 -7.0271 -3.1593 14 6 9.3030 -5.5400 -1.7420 15 7 8.8995 -4.7686 -0.7664 16 14 11.1298 -5.8012 -2.0317 17 1 11.6345 -4.7681 -2.9714 18 1 11.8560 -5.6935 -0.7409 19 1 11.3508 -7.1496 -2.6131 20 6 5.9931 -6.4870 -3.1400 21 6 4.7257 -5.9795 -3.1836 22 7 4.4617 -4.7579 -2.7570 23 6 4.4682 -0.2310 -0.8238 24 6 4.7690 -0.6334 0.6316 25 16 3.6191 0.0366 1.7641 26 8 3.5850 1.4503 1.6238 27 6 2.0093 -0.6664 1.2508 28 1 -0.3633 0.5440 0.8719 29 1 -0.3634 0.4832 -0.9070 30 1 -0.3634 -1.0270 0.0351 31 1 1.8432 -0.0132 -2.1310 32 1 1.4145 -1.5850 -1.4537 33 1 5.7587 -2.0596 -1.5649 34 1 7.4847 -3.7345 -1.7965 35 1 9.5488 -4.3323 -0.1928 36 1 6.1936 -7.4891 -3.4893 37 1 3.9235 -6.5906 -3.5701 38 1 4.1328 0.8056 -0.8572 39 1 5.3658 -0.3479 -1.4310 40 1 5.7673 -0.2839 0.8946 41 1 4.7467 -1.7204 0.7084 42 1 2.1239 -1.7350 1.0689 43 1 1.2786 -0.5118 2.0446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871731194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:03 Heat of formation + Delta-G solvation = -37.910444 kcal Electronic energy + Delta-G solvation = -27493.009090 eV Core-core repulsion = 23664.519734 eV Total energy + Delta-G solvation = -3828.489356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.89468 -40.10746 -38.12915 -36.69738 -36.36890 -36.05307 -35.23361 -32.41648 -31.82136 -30.47443 -28.29803 -27.94356 -27.29606 -25.22620 -23.81095 -23.31597 -21.61306 -20.55030 -19.77065 -19.32952 -18.52224 -17.85685 -17.25150 -17.12778 -16.80085 -16.58657 -16.25602 -16.03065 -15.93272 -15.48353 -15.22903 -14.72243 -14.56509 -14.40946 -14.31038 -13.98111 -13.75750 -13.56931 -13.27983 -13.15594 -12.92141 -12.84672 -12.71913 -12.66044 -12.62223 -12.37388 -12.00365 -11.91087 -11.69215 -11.55131 -11.26020 -11.14388 -11.01792 -9.98945 -9.90537 -9.60730 -9.07676 -8.84493 -8.64034 -6.54844 0.74937 0.84487 1.02139 1.42213 1.43259 1.55113 1.59742 1.75424 2.14635 2.20639 2.73096 2.81165 2.89702 3.50205 3.64650 3.74235 3.79749 3.88522 3.98476 4.11640 4.14881 4.40025 4.48658 4.55159 4.65501 4.67196 4.76892 4.81117 4.84391 4.91839 4.95101 5.01022 5.10190 5.19655 5.25852 5.29172 5.46082 5.51856 5.64764 5.68737 5.95591 6.23655 6.56073 6.73937 6.82778 6.85318 7.49923 7.89609 8.23786 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015657 B = 0.003350 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.930402 B = 8355.286677 C = 9742.435327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.063 0.937 4 C 0.124 3.876 5 N -0.616 5.616 6 C 0.693 3.307 7 O -0.570 6.570 8 N -0.657 5.657 9 C 0.351 3.649 10 C -0.271 4.271 11 C 0.113 3.887 12 C -0.478 4.478 13 H 0.083 0.917 14 C 0.042 3.958 15 N -0.798 5.798 16 Si 0.986 3.014 17 H -0.263 1.263 18 H -0.264 1.264 19 H -0.260 1.260 20 C -0.301 4.301 21 C 0.115 3.885 22 N -0.583 5.583 23 C 0.117 3.883 24 C -0.519 4.519 25 S 1.332 4.668 26 O -0.902 6.902 27 C -0.439 4.439 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.417 0.583 34 H 0.133 0.867 35 H 0.295 0.705 36 H 0.114 0.886 37 H 0.145 0.855 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.148 0.852 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 10.067 9.160 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.081 0.919 4 C 0.001 3.999 5 N -0.354 5.354 6 C 0.394 3.606 7 O -0.444 6.444 8 N -0.307 5.307 9 C 0.124 3.876 10 C -0.297 4.297 11 C 0.105 3.895 12 C -0.508 4.508 13 H 0.101 0.899 14 C -0.176 4.176 15 N -0.423 5.423 16 Si 0.806 3.194 17 H -0.188 1.188 18 H -0.188 1.188 19 H -0.184 1.184 20 C -0.325 4.325 21 C -0.037 4.037 22 N -0.303 5.303 23 C -0.009 4.009 24 C -0.657 4.657 25 S 1.530 4.470 26 O -0.898 6.898 27 C -0.575 4.575 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.256 0.744 34 H 0.150 0.850 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.162 0.838 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.166 0.834 41 H 0.143 0.857 42 H 0.130 0.870 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.111 10.664 9.755 16.107 hybrid contribution 1.500 0.198 -2.286 2.741 sum -5.611 10.861 7.469 14.326 Atomic orbital electron populations 1.21847 0.92279 1.02768 1.02848 1.20928 0.98768 0.98777 0.92614 0.91857 1.21918 0.79440 1.00623 0.97924 1.46485 1.07959 1.15465 1.65467 1.16144 0.82948 0.82042 0.79472 1.90967 1.48504 1.53462 1.51446 1.42610 1.07256 1.13358 1.67479 1.18170 0.89989 0.85098 0.94312 1.21610 0.93894 0.98720 1.15454 1.17965 0.93516 0.90513 0.87502 1.19900 0.94169 1.13725 1.23006 0.89897 1.26800 1.06139 0.92561 0.92125 1.69784 1.39016 1.22349 1.11166 0.85143 0.75247 0.80001 0.79016 1.18783 1.18808 1.18390 1.21784 0.94209 1.01329 1.15224 1.21865 0.95432 0.91065 0.95382 1.67315 1.35451 1.06550 1.21018 1.20961 0.91600 0.94826 0.93477 1.28149 1.17325 1.12343 1.07874 1.69113 0.85746 0.86747 1.05352 1.92976 1.84884 1.28903 1.83026 1.27353 1.17859 1.09095 1.03237 0.90614 0.92328 0.91914 0.92060 0.90384 0.74397 0.84993 0.89418 0.86840 0.83762 0.89319 0.89932 0.83417 0.85699 0.86995 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.78 71.98 0.63 -1.67 16 2 C -0.09 -1.82 2.38 -11.24 -0.03 -1.85 16 3 H 0.06 1.43 6.99 -2.39 -0.02 1.41 16 4 C 0.12 3.21 5.33 86.89 0.46 3.67 16 5 N -0.62 -17.71 2.47 -841.30 -2.08 -19.79 16 6 C 0.69 26.88 7.84 179.05 1.40 28.29 16 7 O -0.57 -27.17 13.87 -3.95 -0.05 -27.23 16 8 N -0.66 -25.94 5.21 -322.37 -1.68 -27.62 16 9 C 0.35 17.13 7.42 132.76 0.98 18.12 16 10 C -0.27 -13.68 8.69 23.00 0.20 -13.48 16 11 C 0.11 5.95 5.66 -21.11 -0.12 5.83 16 12 C -0.48 -24.12 9.13 23.52 0.21 -23.90 16 13 H 0.08 4.03 7.92 -2.91 -0.02 4.01 16 14 C 0.04 1.94 5.21 85.29 0.44 2.38 16 15 N -0.80 -36.89 10.69 21.84 0.23 -36.65 16 16 Si 0.99 34.46 29.60 68.60 2.03 36.49 16 17 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 18 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 19 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 20 C -0.30 -14.87 9.85 22.61 0.22 -14.65 16 21 C 0.12 5.60 11.10 84.27 0.94 6.53 16 22 N -0.58 -30.21 7.85 -194.28 -1.53 -31.74 16 23 C 0.12 2.70 5.09 87.37 0.45 3.14 16 24 C -0.52 -9.44 5.74 72.31 0.42 -9.03 16 25 S 1.33 20.38 13.32 -56.49 -0.75 19.63 16 26 O -0.90 -23.65 16.81 -148.98 -2.50 -26.15 16 27 C -0.44 -7.04 5.52 70.90 0.39 -6.65 16 28 H 0.07 1.03 8.05 -2.39 -0.02 1.01 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 2.36 6.72 -2.39 -0.02 2.34 16 33 H 0.42 13.71 6.33 -92.71 -0.59 13.13 16 34 H 0.13 6.55 5.86 -2.91 -0.02 6.54 16 35 H 0.29 11.97 8.29 -92.71 -0.77 11.21 16 36 H 0.11 5.12 8.06 -2.91 -0.02 5.09 16 37 H 0.15 6.08 8.06 -2.91 -0.02 6.06 16 38 H 0.09 2.03 7.64 -2.39 -0.02 2.01 16 39 H 0.08 1.85 6.45 -2.39 -0.02 1.83 16 40 H 0.15 2.13 8.14 -4.12 -0.03 2.09 16 41 H 0.12 2.49 7.76 -4.12 -0.03 2.46 16 42 H 0.11 1.98 7.95 -2.39 -0.02 1.96 16 43 H 0.14 1.56 7.68 -2.39 -0.02 1.54 16 Total: -1.00 -75.44 355.22 0.70 -74.73 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: 0.43 Total: 41.60 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 6.60 Total: -3.27 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -5.05 Total: -115.80 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -2.56 Total: -53.38 kcal Atomic # 14 Polarization: 34.46 SS G_CDS: 2.03 Total: 36.49 kcal Atomic # 16 Polarization: 20.38 SS G_CDS: -0.75 Total: 19.63 kcal Total: -75.44 0.70 -74.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871731194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.821 kcal (2) G-P(sol) polarization free energy of solvation -75.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds