Wall clock time and date at job start Tue Mar 31 2020 20:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 108.53438 * 2 1 4 4 C 1.52236 * 108.58490 * 242.14101 * 2 1 3 5 5 C 1.49268 * 107.57505 * 149.09807 * 4 2 1 6 6 N 1.47898 * 110.05291 * 94.87289 * 5 4 2 7 7 C 1.34772 * 118.22577 * 139.65316 * 6 5 4 8 8 O 1.21586 * 119.99920 * 175.43133 * 7 6 5 9 9 N 1.34772 * 120.00110 * 355.43675 * 7 6 5 10 10 C 1.39463 * 120.00120 * 184.80300 * 9 7 6 11 11 C 1.38647 * 119.64890 * 185.39358 * 10 9 7 12 12 C 1.40822 * 118.67241 * 179.97438 * 11 10 9 13 13 C 1.41542 * 120.99424 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99837 * 140.66251 * 13 12 11 15 15 C 1.40021 * 120.00148 * 320.65509 * 13 12 11 16 16 N 1.30749 * 120.00003 * 177.25229 * 15 13 12 17 17 Si 1.86802 * 120.00045 * 357.26193 * 15 13 12 18 18 H 1.48499 * 109.47277 * 90.35854 * 17 15 13 19 19 H 1.48502 * 109.46904 * 210.35965 * 17 15 13 20 20 H 1.48504 * 109.46820 * 330.35749 * 17 15 13 21 21 C 1.41162 * 118.00657 * 359.97438 * 12 11 10 22 22 C 1.36592 * 119.12619 * 0.02562 * 21 12 11 23 23 N 1.32071 * 121.26228 * 359.74115 * 22 21 12 24 24 C 1.49327 * 123.49911 * 319.70335 * 6 5 4 25 25 C 1.49987 * 115.25408 * 316.49888 * 24 6 5 26 26 S 1.75280 * 108.47096 * 117.79444 * 2 1 3 27 27 O 1.42101 * 109.46898 * 299.04944 * 26 2 1 28 28 H 1.08998 * 109.47190 * 177.85652 * 1 2 3 29 29 H 1.09006 * 109.46996 * 297.85720 * 1 2 3 30 30 H 1.08997 * 109.47278 * 57.85542 * 1 2 3 31 31 H 1.08999 * 109.85171 * 268.63908 * 4 2 1 32 32 H 1.09000 * 109.84636 * 29.56195 * 4 2 1 33 33 H 1.08997 * 109.36962 * 215.17231 * 5 4 2 34 34 H 1.09005 * 109.36679 * 334.79578 * 5 4 2 35 35 H 0.96999 * 120.00218 * 4.80462 * 9 7 6 36 36 H 1.07993 * 120.65910 * 0.02562 * 11 10 9 37 37 H 0.97000 * 119.99768 * 180.02562 * 16 15 13 38 38 H 1.07999 * 120.43573 * 179.97438 * 21 12 11 39 39 H 1.08000 * 119.36856 * 179.97438 * 22 21 12 40 40 H 1.09001 * 108.32900 * 194.99508 * 24 6 5 41 41 H 1.09001 * 108.18279 * 77.88442 * 24 6 5 42 42 H 1.08998 * 109.39114 * 327.17834 * 25 24 6 43 43 H 1.09006 * 109.31531 * 207.42055 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8764 1.0334 0.0000 4 6 2.0152 -0.6743 -1.2757 5 6 3.3161 -0.0460 -1.6509 6 7 4.4389 -0.8473 -1.1173 7 6 5.5245 -1.0216 -1.8967 8 8 6.4989 -1.6034 -1.4604 9 7 5.5300 -0.5510 -3.1596 10 6 6.6118 -0.8178 -3.9984 11 6 6.6631 -0.2380 -5.2568 12 6 7.7651 -0.5211 -6.0867 13 6 7.8672 0.0436 -7.3805 14 1 8.8248 0.3814 -7.7482 15 6 6.7267 0.1642 -8.1838 16 7 6.8109 0.7346 -9.3573 17 14 5.0847 -0.4896 -7.5788 18 1 4.3663 0.5815 -6.8427 19 1 4.2678 -0.9262 -8.7395 20 1 5.3149 -1.6439 -6.6733 21 6 8.7648 -1.3848 -5.5894 22 6 8.6272 -1.9087 -4.3355 23 7 7.5821 -1.6181 -3.5821 24 6 4.4330 -1.4742 0.2380 25 6 3.9134 -0.6037 1.3434 26 16 2.0853 -0.7752 1.4707 27 8 1.6183 -0.0447 2.5966 28 1 -0.3633 -1.0269 -0.0384 29 1 -0.3633 0.4802 0.9086 30 1 -0.3634 0.5468 -0.8701 31 1 2.1562 -1.7408 -1.1001 32 1 1.2878 -0.5238 -2.0735 33 1 3.3918 0.0076 -2.7369 34 1 3.3638 0.9613 -1.2369 35 1 4.7817 -0.0267 -3.4851 36 1 5.8742 0.4181 -5.5934 37 1 6.0207 0.8184 -9.9136 38 1 9.6266 -1.6288 -6.1928 39 1 9.3895 -2.5703 -3.9513 40 1 5.4534 -1.7681 0.4841 41 1 3.8201 -2.3744 0.1938 42 1 4.1657 0.4359 1.1344 43 1 4.3717 -0.9050 2.2854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871731236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:25 Heat of formation + Delta-G solvation = -3.551559 kcal Electronic energy + Delta-G solvation = -27081.691157 eV Core-core repulsion = 23254.691714 eV Total energy + Delta-G solvation = -3826.999443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.42645 -38.68720 -37.19231 -36.06287 -34.80283 -34.33716 -33.81945 -31.70381 -31.29958 -29.60196 -28.63037 -26.02558 -24.32949 -23.77003 -22.42463 -22.39277 -21.02111 -19.45682 -18.55899 -17.99432 -17.68795 -16.75337 -16.13149 -15.89552 -15.79090 -15.35526 -15.27636 -14.67662 -14.56489 -14.21194 -14.14043 -13.93898 -13.48474 -13.29821 -13.15498 -12.98676 -12.90174 -12.61705 -12.51611 -12.44134 -12.22559 -11.80653 -11.58857 -11.48877 -11.31979 -11.07873 -10.90954 -10.61663 -10.18031 -10.12611 -9.91495 -9.72678 -9.37487 -8.76340 -8.57119 -8.19358 -7.98508 -7.31327 -6.97483 -4.74161 1.16167 2.16994 2.32123 2.50577 2.59094 2.96807 3.09230 3.19650 3.38119 3.58606 3.78503 3.88210 4.11310 4.26069 4.50804 4.59186 4.66801 4.83055 4.90810 4.97062 5.01633 5.10021 5.30154 5.32867 5.33389 5.44759 5.55624 5.62773 5.64557 5.75234 5.78618 6.12210 6.27078 6.34288 6.40963 6.49050 6.80819 6.96611 7.09621 7.23468 7.62118 7.83156 8.04220 8.22585 8.40162 8.66172 8.86336 9.38173 10.04994 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.003076 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.466067 B = 9100.975964 C =10393.491769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.453 4.453 3 H 0.095 0.905 4 C -0.095 4.095 5 C 0.102 3.898 6 N -0.642 5.642 7 C 0.695 3.305 8 O -0.526 6.526 9 N -0.673 5.673 10 C 0.381 3.619 11 C -0.309 4.309 12 C 0.133 3.867 13 C -0.448 4.448 14 H 0.096 0.904 15 C 0.084 3.916 16 N -0.817 5.817 17 Si 0.910 3.090 18 H -0.272 1.272 19 H -0.290 1.290 20 H -0.243 1.243 21 C -0.263 4.263 22 C 0.128 3.872 23 N -0.546 5.546 24 C 0.157 3.843 25 C -0.445 4.445 26 S 1.267 4.733 27 O -0.854 6.854 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.403 0.597 36 H 0.107 0.893 37 H 0.286 0.714 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.075 -4.593 14.539 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.570 4.570 3 H 0.113 0.887 4 C -0.134 4.134 5 C -0.021 4.021 6 N -0.385 5.385 7 C 0.396 3.604 8 O -0.396 6.396 9 N -0.323 5.323 10 C 0.152 3.848 11 C -0.334 4.334 12 C 0.124 3.876 13 C -0.479 4.479 14 H 0.114 0.886 15 C -0.134 4.134 16 N -0.442 5.442 17 Si 0.737 3.263 18 H -0.198 1.198 19 H -0.218 1.218 20 H -0.166 1.166 21 C -0.287 4.287 22 C -0.025 4.025 23 N -0.265 5.265 24 C 0.034 3.966 25 C -0.582 4.582 26 S 1.464 4.536 27 O -0.849 6.849 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.240 0.760 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.148 0.852 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.065 -5.702 16.250 22.235 hybrid contribution -0.548 3.119 -1.244 3.403 sum -14.613 -2.583 15.006 21.104 Atomic orbital electron populations 1.21556 0.90902 1.03231 1.03212 1.27160 1.04847 1.10439 1.14586 0.88652 1.20762 0.96457 1.01025 0.95185 1.21364 0.86448 0.94762 0.99548 1.48466 1.16709 1.57289 1.15989 1.16007 0.83106 0.80424 0.80900 1.91009 1.32259 1.44552 1.71796 1.42923 1.21746 1.56208 1.11456 1.17804 0.87150 0.92930 0.86884 1.21294 1.05748 1.11381 0.95009 1.17756 0.89466 0.87698 0.92664 1.19428 0.97092 1.34327 0.97053 0.88632 1.26064 1.00829 0.92114 0.94349 1.69570 1.32410 1.32835 1.09409 0.86333 0.80363 0.81273 0.78329 1.19789 1.21783 1.16621 1.21825 1.03756 1.04543 0.98553 1.21677 0.93819 0.96477 0.90478 1.67301 1.03376 1.19468 1.36385 1.20446 1.04444 0.93106 0.78599 1.27601 1.19758 1.06426 1.04432 1.70048 0.85955 1.15935 0.81667 1.93099 1.74490 1.75737 1.41623 0.91019 0.92092 0.91208 0.88856 0.89043 0.89967 0.91879 0.75970 0.87505 0.90384 0.86975 0.85172 0.87784 0.91025 0.88887 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 8.82 37.16 0.33 -0.45 16 2 C -0.45 -2.96 2.45 -27.12 -0.07 -3.02 16 3 H 0.09 0.75 7.09 -49.28 -0.35 0.40 16 4 C -0.10 -0.56 5.05 -28.96 -0.15 -0.70 16 5 C 0.10 0.88 5.74 -5.11 -0.03 0.85 16 6 N -0.64 -7.51 3.15 -179.87 -0.57 -8.08 16 7 C 0.69 11.92 8.18 -86.93 -0.71 11.21 16 8 O -0.53 -11.13 13.84 5.29 0.07 -11.05 16 9 N -0.67 -12.01 5.25 -15.86 -0.08 -12.09 16 10 C 0.38 8.45 7.41 -154.67 -1.15 7.31 16 11 C -0.31 -7.10 6.77 -38.45 -0.26 -7.36 16 12 C 0.13 3.26 5.04 -106.55 -0.54 2.72 16 13 C -0.45 -11.66 9.67 -37.65 -0.36 -12.03 16 14 H 0.10 2.62 8.06 -52.49 -0.42 2.19 16 15 C 0.08 2.13 5.51 -17.34 -0.10 2.04 16 16 N -0.82 -21.13 13.92 55.55 0.77 -20.35 16 17 Si 0.91 19.56 24.52 -169.99 -4.17 15.39 16 18 H -0.27 -5.44 6.83 56.52 0.39 -5.06 16 19 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.24 -5.41 6.43 56.52 0.36 -5.05 16 21 C -0.26 -5.98 9.85 -39.07 -0.38 -6.37 16 22 C 0.13 2.80 11.10 -18.04 -0.20 2.60 16 23 N -0.55 -12.83 7.89 -12.75 -0.10 -12.94 16 24 C 0.16 1.45 5.32 -3.97 -0.02 1.42 16 25 C -0.44 -3.51 6.17 35.66 0.22 -3.29 16 26 S 1.27 8.79 12.40 -107.50 -1.33 7.46 16 27 O -0.85 -11.33 17.90 -35.23 -0.63 -11.96 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.46 7.94 -51.93 -0.41 0.05 16 30 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.09 0.42 7.00 -51.93 -0.36 0.06 16 32 H 0.09 0.43 7.76 -51.93 -0.40 0.03 16 33 H 0.08 0.70 5.61 -51.93 -0.29 0.41 16 34 H 0.06 0.53 7.03 -51.93 -0.36 0.17 16 35 H 0.40 5.80 6.04 -40.82 -0.25 5.56 16 36 H 0.11 2.34 4.94 -52.49 -0.26 2.08 16 37 H 0.29 6.69 8.29 -40.82 -0.34 6.36 16 38 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 39 H 0.13 2.45 8.06 -52.49 -0.42 2.02 16 40 H 0.10 1.20 6.83 -51.93 -0.35 0.84 16 41 H 0.07 0.42 7.30 -51.93 -0.38 0.05 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -36.61 348.85 -9.76 -46.37 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.57 Total: 7.06 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -3.42 Total: -5.07 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.02 Total: -53.46 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.56 Total: -23.02 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.17 Total: 15.39 kcal Atomic # 16 Polarization: 8.79 SS G_CDS: -1.33 Total: 7.46 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.61 -9.76 -46.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871731236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.821 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds