Wall clock time and date at job start Tue Mar 31 2020 20:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 108.53438 * 2 1 4 4 C 1.52236 * 108.58490 * 242.14101 * 2 1 3 5 5 C 1.49268 * 107.57505 * 149.09807 * 4 2 1 6 6 N 1.47898 * 110.05291 * 94.87289 * 5 4 2 7 7 C 1.34772 * 118.22577 * 139.65316 * 6 5 4 8 8 O 1.21586 * 119.99920 * 175.43133 * 7 6 5 9 9 N 1.34772 * 120.00110 * 355.43675 * 7 6 5 10 10 C 1.39463 * 120.00120 * 184.80300 * 9 7 6 11 11 C 1.38647 * 119.64890 * 185.39358 * 10 9 7 12 12 C 1.40822 * 118.67241 * 179.97438 * 11 10 9 13 13 C 1.41542 * 120.99424 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99837 * 140.66251 * 13 12 11 15 15 C 1.40021 * 120.00148 * 320.65509 * 13 12 11 16 16 N 1.30749 * 120.00003 * 177.25229 * 15 13 12 17 17 Si 1.86802 * 120.00045 * 357.26193 * 15 13 12 18 18 H 1.48499 * 109.47277 * 90.35854 * 17 15 13 19 19 H 1.48502 * 109.46904 * 210.35965 * 17 15 13 20 20 H 1.48504 * 109.46820 * 330.35749 * 17 15 13 21 21 C 1.41162 * 118.00657 * 359.97438 * 12 11 10 22 22 C 1.36592 * 119.12619 * 0.02562 * 21 12 11 23 23 N 1.32071 * 121.26228 * 359.74115 * 22 21 12 24 24 C 1.49327 * 123.49911 * 319.70335 * 6 5 4 25 25 C 1.49987 * 115.25408 * 316.49888 * 24 6 5 26 26 S 1.75280 * 108.47096 * 117.79444 * 2 1 3 27 27 O 1.42101 * 109.46898 * 299.04944 * 26 2 1 28 28 H 1.08998 * 109.47190 * 177.85652 * 1 2 3 29 29 H 1.09006 * 109.46996 * 297.85720 * 1 2 3 30 30 H 1.08997 * 109.47278 * 57.85542 * 1 2 3 31 31 H 1.08999 * 109.85171 * 268.63908 * 4 2 1 32 32 H 1.09000 * 109.84636 * 29.56195 * 4 2 1 33 33 H 1.08997 * 109.36962 * 215.17231 * 5 4 2 34 34 H 1.09005 * 109.36679 * 334.79578 * 5 4 2 35 35 H 0.96999 * 120.00218 * 4.80462 * 9 7 6 36 36 H 1.07993 * 120.65910 * 0.02562 * 11 10 9 37 37 H 0.97000 * 119.99768 * 180.02562 * 16 15 13 38 38 H 1.07999 * 120.43573 * 179.97438 * 21 12 11 39 39 H 1.08000 * 119.36856 * 179.97438 * 22 21 12 40 40 H 1.09001 * 108.32900 * 194.99508 * 24 6 5 41 41 H 1.09001 * 108.18279 * 77.88442 * 24 6 5 42 42 H 1.08998 * 109.39114 * 327.17834 * 25 24 6 43 43 H 1.09006 * 109.31531 * 207.42055 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8764 1.0334 0.0000 4 6 2.0152 -0.6743 -1.2757 5 6 3.3161 -0.0460 -1.6509 6 7 4.4389 -0.8473 -1.1173 7 6 5.5245 -1.0216 -1.8967 8 8 6.4989 -1.6034 -1.4604 9 7 5.5300 -0.5510 -3.1596 10 6 6.6118 -0.8178 -3.9984 11 6 6.6631 -0.2380 -5.2568 12 6 7.7651 -0.5211 -6.0867 13 6 7.8672 0.0436 -7.3805 14 1 8.8248 0.3814 -7.7482 15 6 6.7267 0.1642 -8.1838 16 7 6.8109 0.7346 -9.3573 17 14 5.0847 -0.4896 -7.5788 18 1 4.3663 0.5815 -6.8427 19 1 4.2678 -0.9262 -8.7395 20 1 5.3149 -1.6439 -6.6733 21 6 8.7648 -1.3848 -5.5894 22 6 8.6272 -1.9087 -4.3355 23 7 7.5821 -1.6181 -3.5821 24 6 4.4330 -1.4742 0.2380 25 6 3.9134 -0.6037 1.3434 26 16 2.0853 -0.7752 1.4707 27 8 1.6183 -0.0447 2.5966 28 1 -0.3633 -1.0269 -0.0384 29 1 -0.3633 0.4802 0.9086 30 1 -0.3634 0.5468 -0.8701 31 1 2.1562 -1.7408 -1.1001 32 1 1.2878 -0.5238 -2.0735 33 1 3.3918 0.0076 -2.7369 34 1 3.3638 0.9613 -1.2369 35 1 4.7817 -0.0267 -3.4851 36 1 5.8742 0.4181 -5.5934 37 1 6.0207 0.8184 -9.9136 38 1 9.6266 -1.6288 -6.1928 39 1 9.3895 -2.5703 -3.9513 40 1 5.4534 -1.7681 0.4841 41 1 3.8201 -2.3744 0.1938 42 1 4.1657 0.4359 1.1344 43 1 4.3717 -0.9050 2.2854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871731236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:24 Heat of formation + Delta-G solvation = -30.307237 kcal Electronic energy + Delta-G solvation = -27082.851371 eV Core-core repulsion = 23254.691714 eV Total energy + Delta-G solvation = -3828.159656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74783 -40.21920 -38.15072 -36.91320 -36.21957 -35.58197 -35.26838 -33.19787 -32.57579 -30.59355 -29.89610 -27.89344 -25.02503 -24.64691 -24.14822 -23.37178 -22.29751 -20.74198 -19.72889 -19.46463 -18.55306 -17.99792 -17.44477 -16.91213 -16.77357 -16.63845 -16.43950 -16.15640 -15.83476 -15.60042 -15.13598 -14.88150 -14.82679 -14.66666 -14.53345 -14.15589 -13.95371 -13.43082 -13.33003 -13.26833 -13.11596 -12.87019 -12.80887 -12.68083 -12.50919 -12.36974 -12.07311 -11.97755 -11.84680 -11.52267 -11.26811 -11.09862 -10.81128 -10.05858 -9.76333 -9.71189 -9.25621 -8.95628 -8.85060 -6.70861 0.55613 0.59111 0.77784 1.25131 1.39949 1.40904 1.50332 1.58764 2.13521 2.20905 2.62071 2.73534 2.76702 3.49180 3.53514 3.67430 3.80713 3.96646 4.05242 4.17373 4.32730 4.36823 4.43072 4.43963 4.54648 4.61683 4.64467 4.74963 4.81095 4.83761 4.95670 4.98830 5.04373 5.16204 5.22201 5.27192 5.28860 5.50357 5.52201 5.64001 5.78878 6.10506 6.28232 6.52589 6.72421 6.73998 7.46867 7.73678 8.22166 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.003076 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.466067 B = 9100.975964 C =10393.491769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.450 4.450 3 H 0.082 0.918 4 C -0.090 4.090 5 C 0.092 3.908 6 N -0.629 5.629 7 C 0.690 3.310 8 O -0.571 6.571 9 N -0.666 5.666 10 C 0.381 3.619 11 C -0.312 4.312 12 C 0.118 3.882 13 C -0.479 4.479 14 H 0.062 0.938 15 C 0.046 3.954 16 N -0.855 5.855 17 Si 0.965 3.035 18 H -0.243 1.243 19 H -0.280 1.280 20 H -0.254 1.254 21 C -0.275 4.275 22 C 0.130 3.870 23 N -0.562 5.562 24 C 0.151 3.849 25 C -0.441 4.441 26 S 1.326 4.674 27 O -0.917 6.917 28 H 0.098 0.902 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.418 0.582 36 H 0.118 0.882 37 H 0.295 0.705 38 H 0.121 0.879 39 H 0.161 0.839 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.935 -5.714 15.637 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.569 4.569 3 H 0.100 0.900 4 C -0.129 4.129 5 C -0.029 4.029 6 N -0.370 5.370 7 C 0.391 3.609 8 O -0.445 6.445 9 N -0.318 5.318 10 C 0.151 3.849 11 C -0.337 4.337 12 C 0.110 3.890 13 C -0.511 4.511 14 H 0.080 0.920 15 C -0.168 4.168 16 N -0.483 5.483 17 Si 0.788 3.212 18 H -0.167 1.167 19 H -0.207 1.207 20 H -0.178 1.178 21 C -0.298 4.298 22 C -0.023 4.023 23 N -0.281 5.281 24 C 0.029 3.971 25 C -0.579 4.579 26 S 1.525 4.475 27 O -0.913 6.913 28 H 0.116 0.884 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.259 0.741 36 H 0.136 0.864 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.179 0.821 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.094 0.906 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.983 -6.782 17.386 25.232 hybrid contribution 0.404 3.471 -1.498 3.802 sum -16.579 -3.311 15.888 23.200 Atomic orbital electron populations 1.21624 0.90064 1.04944 1.02585 1.27105 1.05572 1.09756 1.14427 0.89961 1.20817 0.95071 1.01849 0.95135 1.21672 0.86581 0.94788 0.99879 1.48564 1.15797 1.56588 1.16043 1.16199 0.83832 0.80032 0.80808 1.90980 1.34372 1.46548 1.72624 1.42841 1.21125 1.56338 1.11534 1.17993 0.87745 0.92020 0.87188 1.21360 1.05540 1.11558 0.95248 1.17915 0.90830 0.87959 0.92343 1.19389 0.96435 1.36758 0.98486 0.91996 1.26814 1.03848 0.91968 0.94196 1.69613 1.33860 1.34300 1.10500 0.85508 0.76634 0.80881 0.78208 1.16706 1.20660 1.17831 1.22009 1.03889 1.04620 0.99260 1.22148 0.94047 0.96142 0.89921 1.67454 1.03970 1.19865 1.36843 1.20685 1.04224 0.94642 0.77553 1.27586 1.20638 1.05119 1.04509 1.69285 0.83934 1.14204 0.80082 1.92993 1.75792 1.77185 1.45299 0.88357 0.94218 0.90262 0.86694 0.86697 0.89385 0.91604 0.74074 0.86393 0.89482 0.86069 0.82150 0.90107 0.86786 0.90642 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 8.82 71.98 0.63 -0.51 16 2 C -0.45 -4.43 2.45 30.34 0.07 -4.36 16 3 H 0.08 1.10 7.09 -4.07 -0.03 1.07 16 4 C -0.09 -0.64 5.05 29.15 0.15 -0.49 16 5 C 0.09 1.27 5.74 84.92 0.49 1.75 16 6 N -0.63 -13.01 3.15 -841.25 -2.65 -15.66 16 7 C 0.69 22.35 8.18 179.06 1.47 23.82 16 8 O -0.57 -23.59 13.84 -3.99 -0.06 -23.65 16 9 N -0.67 -22.28 5.25 -322.37 -1.69 -23.97 16 10 C 0.38 16.32 7.41 132.76 0.98 17.30 16 11 C -0.31 -13.98 6.77 23.00 0.16 -13.82 16 12 C 0.12 5.83 5.04 -21.11 -0.11 5.73 16 13 C -0.48 -25.77 9.67 23.52 0.23 -25.54 16 14 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 15 C 0.05 2.34 5.51 85.29 0.47 2.81 16 16 N -0.86 -45.09 13.92 21.84 0.30 -44.79 16 17 Si 0.96 39.13 24.52 68.60 1.68 40.81 16 18 H -0.24 -8.64 6.83 99.48 0.68 -7.96 16 19 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 20 H -0.25 -10.73 6.43 99.48 0.64 -10.09 16 21 C -0.27 -12.48 9.85 22.60 0.22 -12.26 16 22 C 0.13 5.55 11.10 84.27 0.94 6.49 16 23 N -0.56 -25.73 7.89 -194.26 -1.53 -27.26 16 24 C 0.15 2.39 5.32 84.86 0.45 2.85 16 25 C -0.44 -6.10 6.17 71.01 0.44 -5.66 16 26 S 1.33 15.21 12.40 -56.49 -0.70 14.51 16 27 O -0.92 -23.38 17.90 -148.98 -2.67 -26.05 16 28 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.04 0.53 7.94 -2.38 -0.02 0.51 16 30 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 31 H 0.11 0.39 7.00 -2.39 -0.02 0.37 16 32 H 0.11 0.44 7.76 -2.39 -0.02 0.42 16 33 H 0.09 1.14 5.61 -2.39 -0.01 1.12 16 34 H 0.07 0.91 7.03 -2.38 -0.02 0.90 16 35 H 0.42 10.78 6.04 -92.71 -0.56 10.22 16 36 H 0.12 4.93 4.94 -2.91 -0.01 4.92 16 37 H 0.29 13.89 8.29 -92.71 -0.77 13.13 16 38 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16 39 H 0.16 5.74 8.06 -2.91 -0.02 5.71 16 40 H 0.08 1.75 6.83 -2.39 -0.02 1.74 16 41 H 0.11 0.88 7.30 -2.39 -0.02 0.86 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -82.31 348.85 -0.34 -82.64 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.39 Total: 25.32 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 6.59 Total: -1.90 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -5.57 Total: -111.68 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -2.72 Total: -49.70 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.68 Total: 40.81 kcal Atomic # 16 Polarization: 15.21 SS G_CDS: -0.70 Total: 14.51 kcal Total: -82.31 -0.34 -82.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871731236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.336 kcal (2) G-P(sol) polarization free energy of solvation -82.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds