Wall clock time and date at job start Tue Mar 31 2020 20:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.18039 * 2 1 4 4 C 1.49605 * 109.32558 * 119.55344 * 2 1 3 5 5 C 1.55461 * 113.59614 * 209.37816 * 4 2 1 6 6 N 1.47207 * 115.75672 * 316.29617 * 5 4 2 7 7 C 1.34770 * 119.02647 * 136.93844 * 6 5 4 8 8 O 1.21582 * 120.00074 * 359.72463 * 7 6 5 9 9 N 1.34774 * 120.00122 * 179.73034 * 7 6 5 10 10 C 1.39458 * 120.00316 * 175.67165 * 9 7 6 11 11 C 1.38646 * 119.64962 * 185.61221 * 10 9 7 12 12 C 1.40823 * 118.67413 * 180.24895 * 11 10 9 13 13 C 1.41541 * 120.99509 * 179.72625 * 12 11 10 14 14 H 1.08005 * 119.99581 * 161.91583 * 13 12 11 15 15 C 1.40026 * 120.00586 * 342.19947 * 13 12 11 16 16 N 1.30747 * 119.99849 * 340.65453 * 15 13 12 17 17 Si 1.86797 * 120.00576 * 160.66196 * 15 13 12 18 18 H 1.48509 * 109.46892 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47305 * 119.99548 * 17 15 13 20 20 H 1.48495 * 109.47081 * 239.99951 * 17 15 13 21 21 C 1.41168 * 118.00363 * 359.46272 * 12 11 10 22 22 C 1.36591 * 119.12898 * 0.27090 * 21 12 11 23 23 N 1.32074 * 121.25561 * 359.97438 * 22 21 12 24 24 C 1.42848 * 121.94009 * 316.65333 * 6 5 4 25 25 C 1.53965 * 108.11374 * 96.01338 * 24 6 5 26 26 S 1.74761 * 112.56278 * 279.20870 * 25 24 6 27 27 O 1.42106 * 109.46994 * 303.92599 * 26 25 24 28 28 H 1.09001 * 109.47364 * 179.56203 * 1 2 3 29 29 H 1.09008 * 109.47283 * 299.56375 * 1 2 3 30 30 H 1.09004 * 109.47302 * 59.56262 * 1 2 3 31 31 H 1.08995 * 108.68882 * 330.47867 * 4 2 1 32 32 H 1.09002 * 108.69035 * 88.55992 * 4 2 1 33 33 H 1.09003 * 108.38570 * 194.59135 * 5 4 2 34 34 H 1.08996 * 108.19365 * 77.85167 * 5 4 2 35 35 H 0.96999 * 120.00051 * 355.67190 * 9 7 6 36 36 H 1.08007 * 120.66446 * 359.97438 * 11 10 9 37 37 H 0.96993 * 120.00353 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.43503 * 180.25227 * 21 12 11 39 39 H 1.07993 * 119.37248 * 179.97438 * 22 21 12 40 40 H 1.09008 * 109.73116 * 215.65759 * 24 6 5 41 41 H 1.08995 * 109.73593 * 336.34875 * 24 6 5 42 42 H 1.08998 * 108.86855 * 40.00106 * 25 24 6 43 43 H 1.09000 * 108.86177 * 158.41783 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8880 1.0295 0.0000 4 6 2.0250 -0.6963 1.2281 5 6 3.4024 -0.1754 1.7262 6 7 4.4181 0.0451 0.6837 7 6 5.1748 1.1592 0.7331 8 8 5.0099 1.9669 1.6268 9 7 6.1141 1.3781 -0.2082 10 6 6.8349 2.5720 -0.2097 11 6 7.7154 2.8403 -1.2466 12 6 8.4366 4.0496 -1.2247 13 6 9.3525 4.3708 -2.2550 14 1 9.6745 5.3925 -2.3920 15 6 9.8364 3.3648 -3.1003 16 7 9.7631 2.1118 -2.7341 17 14 10.5870 3.8129 -4.7511 18 1 10.5514 5.2871 -4.9273 19 1 11.9946 3.3421 -4.7991 20 1 9.8113 3.1659 -5.8396 21 6 8.2144 4.9345 -0.1475 22 6 7.3220 4.5860 0.8261 23 7 6.6662 3.4406 0.7763 24 6 4.6293 -0.8900 -0.3753 25 6 3.8252 -0.4162 -1.5998 26 16 2.1356 -0.8520 -1.5021 27 8 2.0183 -2.2576 -1.3292 28 1 -0.3634 -1.0276 -0.0079 29 1 -0.3634 0.5071 0.8939 30 1 -0.3634 0.5206 -0.8861 31 1 1.2928 -0.5630 2.0243 32 1 2.1161 -1.7611 1.0132 33 1 3.8018 -0.8918 2.4442 34 1 3.2410 0.7675 2.2486 35 1 6.2889 0.7052 -0.8846 36 1 7.8488 2.1339 -2.0526 37 1 10.0980 1.4150 -3.3198 38 1 8.7434 5.8745 -0.0937 39 1 7.1493 5.2598 1.6522 40 1 5.6897 -0.9303 -0.6246 41 1 4.2850 -1.8776 -0.0685 42 1 3.9055 0.6682 -1.6761 43 1 4.2531 -0.8634 -2.4970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871731237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:27 Heat of formation + Delta-G solvation = -14.959116 kcal Electronic energy + Delta-G solvation = -27445.427772 eV Core-core repulsion = 23617.933660 eV Total energy + Delta-G solvation = -3827.494112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.40625 -38.37054 -36.65677 -35.73769 -35.01701 -34.38817 -33.72041 -31.02341 -30.56186 -29.46556 -28.13725 -26.05839 -24.36861 -24.05444 -22.21238 -21.93182 -20.72870 -19.22394 -18.39064 -17.68885 -17.61455 -16.41902 -16.15785 -15.72871 -15.66960 -15.19383 -14.98722 -14.41880 -14.21973 -13.99220 -13.92158 -13.62053 -13.34723 -13.12281 -12.92322 -12.77097 -12.65336 -12.46362 -12.30513 -12.17321 -11.79418 -11.53777 -11.50092 -11.36766 -11.21881 -10.94224 -10.92310 -10.32242 -10.15082 -10.06064 -9.82886 -9.61144 -9.37683 -8.72482 -8.24370 -8.06377 -7.74606 -7.07354 -6.84974 -4.65540 1.43889 2.48843 2.64890 2.74955 2.79653 2.97715 3.03047 3.21837 3.60019 3.73548 3.79294 4.16777 4.42836 4.55388 4.62228 4.66923 4.83739 4.88887 5.02915 5.13537 5.27130 5.41748 5.42982 5.54460 5.68235 5.69767 5.76411 5.81358 5.86194 5.92759 6.01994 6.47120 6.56544 6.67551 6.79027 6.87869 7.10437 7.14005 7.40578 7.45264 7.81517 8.03157 8.26696 8.42343 8.69498 8.70854 9.06763 9.71488 9.97092 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.003284 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.851049 B = 8524.107657 C = 9676.821059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.403 4.403 3 H 0.119 0.881 4 C -0.121 4.121 5 C 0.122 3.878 6 N -0.630 5.630 7 C 0.692 3.308 8 O -0.526 6.526 9 N -0.665 5.665 10 C 0.353 3.647 11 C -0.256 4.256 12 C 0.141 3.859 13 C -0.449 4.449 14 H 0.083 0.917 15 C 0.078 3.922 16 N -0.782 5.782 17 Si 0.911 3.089 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.270 1.270 21 C -0.287 4.287 22 C 0.122 3.878 23 N -0.557 5.557 24 C 0.125 3.875 25 C -0.516 4.516 26 S 1.272 4.728 27 O -0.851 6.851 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.404 0.596 36 H 0.134 0.866 37 H 0.281 0.719 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.128 0.872 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 -6.312 -2.279 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.520 4.520 3 H 0.137 0.863 4 C -0.160 4.160 5 C -0.002 4.002 6 N -0.369 5.369 7 C 0.393 3.607 8 O -0.396 6.396 9 N -0.314 5.314 10 C 0.128 3.872 11 C -0.282 4.282 12 C 0.133 3.867 13 C -0.480 4.480 14 H 0.101 0.899 15 C -0.141 4.141 16 N -0.407 5.407 17 Si 0.735 3.265 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.195 1.195 21 C -0.312 4.312 22 C -0.032 4.032 23 N -0.276 5.276 24 C -0.001 4.001 25 C -0.654 4.654 26 S 1.469 4.531 27 O -0.847 6.847 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.241 0.759 36 H 0.151 0.849 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.146 0.854 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.319 -6.756 -1.557 16.814 hybrid contribution 2.475 -0.720 -0.068 2.578 sum -12.844 -7.475 -1.625 14.950 Atomic orbital electron populations 1.21486 0.91404 1.02238 1.03132 1.26918 1.02998 1.10165 1.11893 0.86276 1.21621 0.96332 1.00030 0.97996 1.21772 0.86420 1.03195 0.88772 1.46557 1.38772 1.22006 1.29580 1.16048 0.79929 0.81567 0.83142 1.91004 1.69438 1.44555 1.34632 1.42762 1.37801 1.19164 1.31706 1.17982 0.91174 0.85556 0.92537 1.21637 1.02741 1.03006 1.00773 1.17551 0.89099 0.89832 0.90208 1.19647 1.21751 0.95593 1.10978 0.89887 1.26001 0.94159 0.94367 0.99617 1.69789 1.34317 1.01097 1.35509 0.86218 0.78896 0.80412 0.81019 1.18176 1.19859 1.19533 1.21607 1.07545 1.03091 0.98910 1.21455 0.92679 0.92402 0.96656 1.67204 1.29747 1.04520 1.26167 1.20742 1.00533 0.93325 0.85501 1.28093 1.21157 1.10955 1.05237 1.69629 0.89005 0.91046 1.03427 1.93071 1.81851 1.27177 1.82563 0.92456 0.91549 0.91300 0.89920 0.91734 0.92299 0.88665 0.75905 0.84871 0.90743 0.88119 0.86116 0.90199 0.89767 0.85387 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 8.98 37.15 0.33 -0.55 16 2 C -0.40 -3.63 2.74 -28.41 -0.08 -3.71 16 3 H 0.12 1.14 7.96 -51.93 -0.41 0.73 16 4 C -0.12 -1.27 5.02 -27.10 -0.14 -1.41 16 5 C 0.12 1.58 6.01 -2.35 -0.01 1.56 16 6 N -0.63 -9.15 2.46 -179.51 -0.44 -9.59 16 7 C 0.69 13.33 7.84 -86.93 -0.68 12.65 16 8 O -0.53 -12.28 13.86 5.29 0.07 -12.21 16 9 N -0.67 -13.09 5.21 -15.87 -0.08 -13.17 16 10 C 0.35 8.50 7.42 -154.68 -1.15 7.35 16 11 C -0.26 -6.37 8.70 -38.45 -0.33 -6.70 16 12 C 0.14 3.65 5.66 -106.55 -0.60 3.05 16 13 C -0.45 -11.27 9.13 -37.65 -0.34 -11.62 16 14 H 0.08 2.00 7.92 -52.48 -0.42 1.59 16 15 C 0.08 1.83 5.20 -17.34 -0.09 1.74 16 16 N -0.78 -18.62 10.70 55.55 0.59 -18.03 16 17 Si 0.91 17.31 29.60 -169.99 -5.03 12.28 16 18 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 21 C -0.29 -6.99 9.85 -39.07 -0.38 -7.37 16 22 C 0.12 2.91 11.10 -18.04 -0.20 2.71 16 23 N -0.56 -14.21 7.85 -12.76 -0.10 -14.31 16 24 C 0.13 1.52 5.10 -5.46 -0.03 1.50 16 25 C -0.52 -5.02 5.75 37.66 0.22 -4.80 16 26 S 1.27 11.00 12.69 -107.50 -1.36 9.63 16 27 O -0.85 -11.82 16.81 -35.23 -0.59 -12.41 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.46 8.04 -51.92 -0.42 0.04 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.76 7.66 -51.93 -0.40 0.36 16 32 H 0.06 0.76 7.00 -51.93 -0.36 0.40 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.40 6.88 -51.93 -0.36 1.04 16 35 H 0.40 6.75 6.33 -40.82 -0.26 6.49 16 36 H 0.13 3.28 5.86 -52.48 -0.31 2.97 16 37 H 0.28 6.02 8.29 -40.82 -0.34 5.68 16 38 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 40 H 0.08 0.96 6.45 -51.92 -0.33 0.62 16 41 H 0.08 1.02 7.65 -51.93 -0.40 0.63 16 42 H 0.13 1.30 7.77 -49.21 -0.38 0.92 16 43 H 0.13 1.03 8.14 -49.21 -0.40 0.63 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -34.87 355.50 -10.77 -45.64 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -5.69 Total: 12.40 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.49 Total: -5.59 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.03 Total: -55.10 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.52 Total: -24.62 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Atomic # 16 Polarization: 11.00 SS G_CDS: -1.36 Total: 9.63 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.87 -10.77 -45.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871731237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.684 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds