Wall clock time and date at job start Tue Mar 31 2020 20:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.18039 * 2 1 4 4 C 1.49605 * 109.32558 * 119.55344 * 2 1 3 5 5 C 1.55461 * 113.59614 * 209.37816 * 4 2 1 6 6 N 1.47207 * 115.75672 * 316.29617 * 5 4 2 7 7 C 1.34770 * 119.02647 * 136.93844 * 6 5 4 8 8 O 1.21582 * 120.00074 * 359.72463 * 7 6 5 9 9 N 1.34774 * 120.00122 * 179.73034 * 7 6 5 10 10 C 1.39458 * 120.00316 * 175.67165 * 9 7 6 11 11 C 1.38646 * 119.64962 * 185.61221 * 10 9 7 12 12 C 1.40823 * 118.67413 * 180.24895 * 11 10 9 13 13 C 1.41541 * 120.99509 * 179.72625 * 12 11 10 14 14 H 1.08005 * 119.99581 * 161.91583 * 13 12 11 15 15 C 1.40026 * 120.00586 * 342.19947 * 13 12 11 16 16 N 1.30747 * 119.99849 * 340.65453 * 15 13 12 17 17 Si 1.86797 * 120.00576 * 160.66196 * 15 13 12 18 18 H 1.48509 * 109.46892 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47305 * 119.99548 * 17 15 13 20 20 H 1.48495 * 109.47081 * 239.99951 * 17 15 13 21 21 C 1.41168 * 118.00363 * 359.46272 * 12 11 10 22 22 C 1.36591 * 119.12898 * 0.27090 * 21 12 11 23 23 N 1.32074 * 121.25561 * 359.97438 * 22 21 12 24 24 C 1.42848 * 121.94009 * 316.65333 * 6 5 4 25 25 C 1.53965 * 108.11374 * 96.01338 * 24 6 5 26 26 S 1.74761 * 112.56278 * 279.20870 * 25 24 6 27 27 O 1.42106 * 109.46994 * 303.92599 * 26 25 24 28 28 H 1.09001 * 109.47364 * 179.56203 * 1 2 3 29 29 H 1.09008 * 109.47283 * 299.56375 * 1 2 3 30 30 H 1.09004 * 109.47302 * 59.56262 * 1 2 3 31 31 H 1.08995 * 108.68882 * 330.47867 * 4 2 1 32 32 H 1.09002 * 108.69035 * 88.55992 * 4 2 1 33 33 H 1.09003 * 108.38570 * 194.59135 * 5 4 2 34 34 H 1.08996 * 108.19365 * 77.85167 * 5 4 2 35 35 H 0.96999 * 120.00051 * 355.67190 * 9 7 6 36 36 H 1.08007 * 120.66446 * 359.97438 * 11 10 9 37 37 H 0.96993 * 120.00353 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.43503 * 180.25227 * 21 12 11 39 39 H 1.07993 * 119.37248 * 179.97438 * 22 21 12 40 40 H 1.09008 * 109.73116 * 215.65759 * 24 6 5 41 41 H 1.08995 * 109.73593 * 336.34875 * 24 6 5 42 42 H 1.08998 * 108.86855 * 40.00106 * 25 24 6 43 43 H 1.09000 * 108.86177 * 158.41783 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8880 1.0295 0.0000 4 6 2.0250 -0.6963 1.2281 5 6 3.4024 -0.1754 1.7262 6 7 4.4181 0.0451 0.6837 7 6 5.1748 1.1592 0.7331 8 8 5.0099 1.9669 1.6268 9 7 6.1141 1.3781 -0.2082 10 6 6.8349 2.5720 -0.2097 11 6 7.7154 2.8403 -1.2466 12 6 8.4366 4.0496 -1.2247 13 6 9.3525 4.3708 -2.2550 14 1 9.6745 5.3925 -2.3920 15 6 9.8364 3.3648 -3.1003 16 7 9.7631 2.1118 -2.7341 17 14 10.5870 3.8129 -4.7511 18 1 10.5514 5.2871 -4.9273 19 1 11.9946 3.3421 -4.7991 20 1 9.8113 3.1659 -5.8396 21 6 8.2144 4.9345 -0.1475 22 6 7.3220 4.5860 0.8261 23 7 6.6662 3.4406 0.7763 24 6 4.6293 -0.8900 -0.3753 25 6 3.8252 -0.4162 -1.5998 26 16 2.1356 -0.8520 -1.5021 27 8 2.0183 -2.2576 -1.3292 28 1 -0.3634 -1.0276 -0.0079 29 1 -0.3634 0.5071 0.8939 30 1 -0.3634 0.5206 -0.8861 31 1 1.2928 -0.5630 2.0243 32 1 2.1161 -1.7611 1.0132 33 1 3.8018 -0.8918 2.4442 34 1 3.2410 0.7675 2.2486 35 1 6.2889 0.7052 -0.8846 36 1 7.8488 2.1339 -2.0526 37 1 10.0980 1.4150 -3.3198 38 1 8.7434 5.8745 -0.0937 39 1 7.1493 5.2598 1.6522 40 1 5.6897 -0.9303 -0.6246 41 1 4.2850 -1.8776 -0.0685 42 1 3.9055 0.6682 -1.6761 43 1 4.2531 -0.8634 -2.4970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871731237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:26 Heat of formation + Delta-G solvation = -37.458367 kcal Electronic energy + Delta-G solvation = -27446.403412 eV Core-core repulsion = 23617.933660 eV Total energy + Delta-G solvation = -3828.469753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.88071 -40.08415 -37.93770 -36.72198 -36.29830 -35.98152 -35.24852 -32.42661 -32.02255 -30.82531 -29.49751 -27.92624 -25.29716 -25.18153 -23.80502 -23.45832 -22.10740 -20.67055 -19.73106 -19.31916 -18.55352 -17.83660 -17.26777 -17.06171 -16.92099 -16.59716 -16.15932 -16.03060 -15.88315 -15.38404 -15.22297 -14.78489 -14.62817 -14.36405 -14.23990 -14.06594 -13.90892 -13.63338 -13.40087 -13.16835 -13.13657 -12.89376 -12.68500 -12.62743 -12.37072 -12.19616 -12.01347 -11.90273 -11.81023 -11.55533 -11.26609 -11.14102 -10.91203 -9.99408 -9.91646 -9.60725 -9.09588 -8.86613 -8.63593 -6.55472 0.68386 0.84015 1.01281 1.42542 1.43486 1.56177 1.60023 1.73037 2.13803 2.20805 2.70963 2.82047 2.87834 3.53288 3.64449 3.73941 3.79170 3.89225 3.99236 4.13808 4.16095 4.36229 4.40935 4.52213 4.68345 4.72223 4.77985 4.80387 4.83912 4.89782 4.94958 5.07597 5.09640 5.17787 5.25544 5.32787 5.46216 5.51533 5.64534 5.67915 5.95331 6.23232 6.55678 6.73455 6.82565 6.84854 7.49474 7.89250 8.22844 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.003284 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.851049 B = 8524.107657 C = 9676.821059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.408 4.408 3 H 0.117 0.883 4 C -0.113 4.113 5 C 0.119 3.881 6 N -0.616 5.616 7 C 0.693 3.307 8 O -0.570 6.570 9 N -0.657 5.657 10 C 0.351 3.649 11 C -0.271 4.271 12 C 0.113 3.887 13 C -0.477 4.477 14 H 0.084 0.916 15 C 0.042 3.958 16 N -0.803 5.803 17 Si 0.987 3.013 18 H -0.258 1.258 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.301 4.301 22 C 0.115 3.885 23 N -0.583 5.583 24 C 0.116 3.884 25 C -0.520 4.520 26 S 1.332 4.668 27 O -0.898 6.898 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.417 0.583 36 H 0.132 0.868 37 H 0.294 0.706 38 H 0.114 0.886 39 H 0.145 0.855 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.127 0.873 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.729 -6.768 -4.009 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.525 4.525 3 H 0.135 0.865 4 C -0.152 4.152 5 C -0.004 4.004 6 N -0.354 5.354 7 C 0.394 3.606 8 O -0.444 6.444 9 N -0.307 5.307 10 C 0.124 3.876 11 C -0.297 4.297 12 C 0.105 3.895 13 C -0.507 4.507 14 H 0.102 0.898 15 C -0.176 4.176 16 N -0.428 5.428 17 Si 0.807 3.193 18 H -0.182 1.182 19 H -0.192 1.192 20 H -0.184 1.184 21 C -0.325 4.325 22 C -0.037 4.037 23 N -0.303 5.303 24 C -0.009 4.009 25 C -0.658 4.658 26 S 1.529 4.471 27 O -0.894 6.894 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.256 0.744 36 H 0.150 0.850 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.163 0.837 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.146 0.854 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.921 -7.277 -3.297 17.813 hybrid contribution 2.665 -0.619 0.533 2.787 sum -13.256 -7.897 -2.763 15.675 Atomic orbital electron populations 1.21545 0.89558 1.02544 1.04727 1.26997 1.04707 1.09709 1.11125 0.86526 1.21581 0.94963 0.99299 0.99311 1.21926 0.87396 1.02491 0.88558 1.46486 1.37948 1.20728 1.30239 1.16146 0.79905 0.82203 0.82359 1.90970 1.70665 1.46500 1.36246 1.42619 1.37539 1.18307 1.32266 1.18171 0.91044 0.86412 0.91933 1.21621 1.03594 1.03177 1.01308 1.17974 0.89836 0.90670 0.91036 1.19927 1.22448 0.96298 1.11982 0.89785 1.26845 0.94146 0.93923 1.02727 1.69802 1.34021 1.02082 1.36928 0.85086 0.78143 0.80015 0.76080 1.18163 1.19181 1.18362 1.21784 1.08150 1.03663 0.98921 1.21871 0.92174 0.92476 0.97220 1.67319 1.30689 1.05354 1.26978 1.20953 1.01299 0.92901 0.85736 1.28151 1.21658 1.11049 1.04899 1.69143 0.87212 0.88575 1.02168 1.92977 1.82552 1.30273 1.83607 0.92750 0.91137 0.88712 0.88352 0.92627 0.91872 0.90411 0.74391 0.85003 0.89537 0.86800 0.83741 0.90012 0.89375 0.85439 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.98 71.98 0.65 -0.84 16 2 C -0.41 -6.68 2.74 29.50 0.08 -6.60 16 3 H 0.12 2.06 7.96 -2.39 -0.02 2.04 16 4 C -0.11 -2.24 5.02 30.35 0.15 -2.08 16 5 C 0.12 3.05 6.01 87.09 0.52 3.58 16 6 N -0.62 -17.68 2.46 -840.11 -2.07 -19.75 16 7 C 0.69 26.86 7.84 179.06 1.40 28.26 16 8 O -0.57 -27.14 13.86 -3.97 -0.06 -27.20 16 9 N -0.66 -26.01 5.21 -322.37 -1.68 -27.69 16 10 C 0.35 17.16 7.42 132.76 0.98 18.14 16 11 C -0.27 -13.71 8.70 23.00 0.20 -13.51 16 12 C 0.11 5.94 5.66 -21.11 -0.12 5.82 16 13 C -0.48 -24.04 9.13 23.52 0.21 -23.83 16 14 H 0.08 4.07 7.92 -2.91 -0.02 4.05 16 15 C 0.04 1.92 5.20 85.29 0.44 2.36 16 16 N -0.80 -37.82 10.70 21.84 0.23 -37.58 16 17 Si 0.99 34.39 29.60 68.60 2.03 36.42 16 18 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 19 H -0.27 -9.00 7.11 99.48 0.71 -8.30 16 20 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 21 C -0.30 -14.85 9.85 22.60 0.22 -14.63 16 22 C 0.12 5.60 11.10 84.27 0.94 6.53 16 23 N -0.58 -30.23 7.85 -194.27 -1.53 -31.75 16 24 C 0.12 2.71 5.10 87.38 0.45 3.15 16 25 C -0.52 -9.25 5.75 72.31 0.42 -8.83 16 26 S 1.33 20.63 12.69 -56.49 -0.72 19.91 16 27 O -0.90 -23.59 16.81 -148.98 -2.50 -26.09 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.81 8.04 -2.38 -0.02 0.79 16 30 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.10 1.66 7.66 -2.39 -0.02 1.64 16 32 H 0.06 1.24 7.00 -2.39 -0.02 1.22 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 2.31 6.88 -2.39 -0.02 2.30 16 35 H 0.42 13.82 6.33 -92.71 -0.59 13.24 16 36 H 0.13 6.57 5.86 -2.91 -0.02 6.55 16 37 H 0.29 12.20 8.29 -92.71 -0.77 11.43 16 38 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 39 H 0.15 6.08 8.06 -2.91 -0.02 6.06 16 40 H 0.08 1.88 6.45 -2.38 -0.02 1.86 16 41 H 0.09 2.04 7.65 -2.39 -0.02 2.02 16 42 H 0.13 2.39 7.77 -4.12 -0.03 2.36 16 43 H 0.15 2.06 8.14 -4.12 -0.03 2.02 16 Total: -1.00 -75.71 355.50 0.69 -75.02 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: 0.43 Total: 41.17 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 6.55 Total: -2.47 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -5.04 Total: -116.77 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -2.56 Total: -53.29 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Atomic # 16 Polarization: 20.63 SS G_CDS: -0.72 Total: 19.91 kcal Total: -75.71 0.69 -75.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871731237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.561 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds