Wall clock time and date at job start Tue Mar 31 2020 20:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.32622 * 2 1 4 4 C 1.49606 * 109.32218 * 119.46623 * 2 1 3 5 5 C 1.55468 * 113.59469 * 209.37732 * 4 2 1 6 6 N 1.47203 * 115.75187 * 316.29343 * 5 4 2 7 7 C 1.34781 * 119.02507 * 136.93475 * 6 5 4 8 8 O 1.21588 * 119.99639 * 359.72689 * 7 6 5 9 9 N 1.34774 * 120.00181 * 179.72611 * 7 6 5 10 10 C 1.39455 * 120.00037 * 184.07513 * 9 7 6 11 11 C 1.38650 * 119.65140 * 177.74729 * 10 9 7 12 12 C 1.40815 * 118.67575 * 180.22585 * 11 10 9 13 13 C 1.41547 * 120.99815 * 179.80127 * 12 11 10 14 14 H 1.07997 * 119.99888 * 22.83434 * 13 12 11 15 15 C 1.40024 * 119.99967 * 202.84175 * 13 12 11 16 16 N 1.30741 * 120.00438 * 17.17955 * 15 13 12 17 17 Si 1.86807 * 119.99926 * 197.18448 * 15 13 12 18 18 H 1.48502 * 109.46804 * 265.01467 * 17 15 13 19 19 H 1.48503 * 109.46751 * 25.01101 * 17 15 13 20 20 H 1.48498 * 109.47104 * 145.01456 * 17 15 13 21 21 C 1.41162 * 118.00589 * 359.52988 * 12 11 10 22 22 C 1.36595 * 119.12972 * 0.24888 * 21 12 11 23 23 N 1.32067 * 121.25643 * 359.97438 * 22 21 12 24 24 C 1.42846 * 121.94760 * 316.65263 * 6 5 4 25 25 C 1.53963 * 108.11522 * 96.01170 * 24 6 5 26 26 S 1.74754 * 112.56534 * 279.21374 * 25 24 6 27 27 O 1.42105 * 109.46971 * 178.22489 * 26 25 24 28 28 H 1.09004 * 109.47514 * 179.65320 * 1 2 3 29 29 H 1.08997 * 109.47259 * 299.65175 * 1 2 3 30 30 H 1.09000 * 109.46763 * 59.65234 * 1 2 3 31 31 H 1.08991 * 108.69255 * 330.47487 * 4 2 1 32 32 H 1.08998 * 108.69008 * 88.55645 * 4 2 1 33 33 H 1.09000 * 108.38776 * 194.59283 * 5 4 2 34 34 H 1.09002 * 108.19380 * 77.84661 * 5 4 2 35 35 H 0.97003 * 119.99880 * 4.07422 * 9 7 6 36 36 H 1.07997 * 120.65580 * 0.02562 * 11 10 9 37 37 H 0.97000 * 120.00488 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.43746 * 180.22925 * 21 12 11 39 39 H 1.07996 * 119.37374 * 180.02562 * 22 21 12 40 40 H 1.09005 * 109.73401 * 215.66234 * 24 6 5 41 41 H 1.09000 * 109.73524 * 336.35271 * 24 6 5 42 42 H 1.08997 * 108.86942 * 40.00530 * 25 24 6 43 43 H 1.08999 * 108.86739 * 158.52212 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8907 1.0285 0.0000 4 6 2.0250 -0.6945 1.2292 5 6 3.4025 -0.1728 1.7266 6 7 4.4181 0.0459 0.6837 7 6 5.1748 1.1602 0.7313 8 8 5.0099 1.9694 1.6237 9 7 6.1142 1.3776 -0.2103 10 6 6.9543 2.4866 -0.1143 11 6 7.9488 2.6778 -1.0613 12 6 8.7884 3.8020 -0.9418 13 6 9.8220 4.0426 -1.8784 14 1 9.7651 3.6130 -2.8677 15 6 10.9183 4.8376 -1.5224 16 7 11.1688 5.0792 -0.2621 17 14 12.0230 5.5532 -2.8480 18 1 13.1899 4.6586 -3.0560 19 1 11.2597 5.6741 -4.1162 20 1 12.4973 6.8955 -2.4257 21 6 8.5646 4.6848 0.1367 22 6 7.5561 4.4159 1.0178 23 7 6.7902 3.3491 0.8780 24 6 4.6294 -0.8908 -0.3739 25 6 3.8252 -0.4189 -1.5991 26 16 2.1357 -0.8545 -1.5007 27 8 1.4503 -0.3534 -2.6402 28 1 -0.3634 -1.0277 -0.0062 29 1 -0.3633 0.5084 0.8931 30 1 -0.3633 0.5192 -0.8869 31 1 1.2928 -0.5599 2.0252 32 1 2.1160 -1.7595 1.0159 33 1 3.8018 -0.8881 2.4456 34 1 3.2410 0.7710 2.2475 35 1 6.2061 0.7626 -0.9548 36 1 8.0789 1.9768 -1.8724 37 1 11.9281 5.6302 -0.0155 38 1 9.1829 5.5611 0.2637 39 1 7.3812 5.0889 1.8442 40 1 5.6897 -0.9315 -0.6231 41 1 4.2850 -1.8779 -0.0655 42 1 3.9056 0.6653 -1.6772 43 1 4.2520 -0.8688 -2.4954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871731238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:30 Heat of formation + Delta-G solvation = -15.572181 kcal Electronic energy + Delta-G solvation = -27063.008185 eV Core-core repulsion = 23235.487489 eV Total energy + Delta-G solvation = -3827.520697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46382 -38.38693 -36.68876 -35.84143 -35.07305 -34.50839 -33.52717 -31.09137 -30.69135 -29.48307 -28.12483 -26.03204 -24.40351 -24.14173 -22.36253 -21.79371 -20.91714 -19.22661 -18.45322 -17.81022 -17.44403 -16.59192 -16.20027 -15.68299 -15.58165 -15.23725 -14.99580 -14.49763 -14.26165 -14.02655 -13.91743 -13.83797 -13.47862 -13.32622 -13.00184 -12.81198 -12.48989 -12.43920 -12.32988 -12.15960 -11.98122 -11.63139 -11.47334 -11.27541 -11.24046 -11.06998 -10.98599 -10.41736 -10.08932 -10.08681 -9.79715 -9.59626 -9.38426 -8.67850 -8.39144 -8.06657 -7.73829 -7.06333 -6.85507 -4.64452 1.31977 2.40115 2.67286 2.73755 2.75062 2.99684 3.04286 3.20441 3.53194 3.72038 3.81876 4.07929 4.32751 4.50567 4.64272 4.69505 4.74742 4.81963 4.95408 5.06901 5.20078 5.31799 5.41275 5.47409 5.60170 5.68552 5.72531 5.80221 5.82692 5.89382 5.98452 6.42472 6.53683 6.64453 6.74519 6.88086 7.03453 7.13212 7.40281 7.49772 7.84236 7.99508 8.21570 8.44506 8.70201 8.71133 9.01097 9.70647 10.02621 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.002678 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.904931 B =10452.425310 C =11185.692875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.405 4.405 3 H 0.093 0.907 4 C -0.095 4.095 5 C 0.118 3.882 6 N -0.632 5.632 7 C 0.689 3.311 8 O -0.523 6.523 9 N -0.668 5.668 10 C 0.365 3.635 11 C -0.310 4.310 12 C 0.148 3.852 13 C -0.454 4.454 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.782 5.782 17 Si 0.912 3.088 18 H -0.269 1.269 19 H -0.259 1.259 20 H -0.274 1.274 21 C -0.227 4.227 22 C 0.105 3.895 23 N -0.554 5.554 24 C 0.145 3.855 25 C -0.523 4.523 26 S 1.275 4.725 27 O -0.856 6.856 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.403 0.597 36 H 0.099 0.901 37 H 0.284 0.716 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.251 -16.300 1.171 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.522 4.522 3 H 0.111 0.889 4 C -0.134 4.134 5 C -0.005 4.005 6 N -0.371 5.371 7 C 0.390 3.610 8 O -0.393 6.393 9 N -0.318 5.318 10 C 0.136 3.864 11 C -0.336 4.336 12 C 0.139 3.861 13 C -0.485 4.485 14 H 0.099 0.901 15 C -0.142 4.142 16 N -0.407 5.407 17 Si 0.735 3.265 18 H -0.194 1.194 19 H -0.183 1.183 20 H -0.198 1.198 21 C -0.250 4.250 22 C -0.045 4.045 23 N -0.274 5.274 24 C 0.019 3.981 25 C -0.661 4.661 26 S 1.472 4.528 27 O -0.851 6.851 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.239 0.761 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.388 -16.268 2.054 21.815 hybrid contribution 1.814 2.537 -1.930 3.667 sum -12.575 -13.731 0.124 18.619 Atomic orbital electron populations 1.21513 0.91730 1.02493 1.02931 1.26864 1.02819 1.10076 1.12432 0.88873 1.21287 0.96129 0.99731 0.96293 1.21845 0.86421 1.03499 0.88702 1.46589 1.38893 1.21824 1.29814 1.16098 0.79885 0.81783 0.83209 1.91021 1.68654 1.44299 1.35322 1.42782 1.34836 1.27326 1.26807 1.17793 0.88823 0.86991 0.92818 1.21109 1.04728 1.03446 1.04355 1.17556 0.89603 0.87951 0.90945 1.19565 1.02632 1.26679 0.99649 0.90077 1.25978 0.98023 0.94097 0.96080 1.69785 1.25082 1.28240 1.17545 0.86244 0.79776 0.78903 0.81536 1.19402 1.18299 1.19839 1.21972 1.01075 1.02689 0.99291 1.21606 0.92012 0.93326 0.97529 1.67214 1.30830 1.05936 1.23419 1.20461 0.99686 0.93615 0.84368 1.28108 1.21729 1.09877 1.06419 1.69482 0.82373 1.15540 0.85425 1.93098 1.67334 1.80836 1.43853 0.91710 0.91570 0.92241 0.89434 0.90755 0.91410 0.89077 0.76136 0.88239 0.90526 0.85520 0.86050 0.89786 0.88270 0.88388 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 8.87 37.16 0.33 -0.71 16 2 C -0.40 -3.55 2.75 -28.41 -0.08 -3.63 16 3 H 0.09 1.14 7.95 -51.93 -0.41 0.73 16 4 C -0.09 -0.59 5.02 -27.10 -0.14 -0.72 16 5 C 0.12 1.15 6.01 -2.35 -0.01 1.14 16 6 N -0.63 -7.64 2.46 -179.50 -0.44 -8.08 16 7 C 0.69 12.66 7.84 -86.92 -0.68 11.98 16 8 O -0.52 -12.06 13.86 5.29 0.07 -11.98 16 9 N -0.67 -12.62 5.18 -15.86 -0.08 -12.70 16 10 C 0.36 8.73 7.42 -154.67 -1.15 7.58 16 11 C -0.31 -7.56 9.74 -38.46 -0.37 -7.93 16 12 C 0.15 3.92 5.61 -106.55 -0.60 3.33 16 13 C -0.45 -11.73 9.12 -37.65 -0.34 -12.07 16 14 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 15 C 0.08 1.90 5.20 -17.35 -0.09 1.81 16 16 N -0.78 -19.62 10.89 55.55 0.61 -19.02 16 17 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 18 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 C -0.23 -5.97 8.75 -39.07 -0.34 -6.32 16 22 C 0.11 2.69 11.10 -18.04 -0.20 2.49 16 23 N -0.55 -14.48 7.85 -12.75 -0.10 -14.58 16 24 C 0.15 1.16 5.09 -5.46 -0.03 1.13 16 25 C -0.52 -4.70 5.58 37.66 0.21 -4.49 16 26 S 1.27 10.65 12.38 -107.50 -1.33 9.32 16 27 O -0.86 -12.99 17.82 -35.23 -0.63 -13.62 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 30 H 0.06 0.61 8.00 -51.93 -0.42 0.20 16 31 H 0.09 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.07 0.20 7.78 -51.93 -0.40 -0.21 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.17 6.88 -51.93 -0.36 0.82 16 35 H 0.40 6.05 6.30 -40.82 -0.26 5.80 16 36 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.28 6.42 8.29 -40.82 -0.34 6.09 16 38 H 0.13 3.36 6.15 -52.49 -0.32 3.04 16 39 H 0.12 2.79 8.06 -52.49 -0.42 2.37 16 40 H 0.08 0.66 6.58 -51.93 -0.34 0.32 16 41 H 0.10 0.35 7.92 -51.93 -0.41 -0.06 16 42 H 0.10 1.26 7.77 -49.20 -0.38 0.88 16 43 H 0.13 0.92 8.14 -49.11 -0.40 0.52 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -38.31 357.22 -10.81 -49.12 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.76 Total: 9.61 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -3.49 Total: -6.43 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.02 Total: -54.38 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.55 Total: -25.60 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 10.65 SS G_CDS: -1.33 Total: 9.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.31 -10.81 -49.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871731238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.547 kcal (2) G-P(sol) polarization free energy of solvation -38.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds