Wall clock time and date at job start Tue Mar 31 2020 20:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.74698 * 2 1 4 4 C 1.53812 * 109.75962 * 239.36596 * 2 1 3 5 5 N 1.46962 * 108.58007 * 289.95391 * 4 2 1 6 6 C 1.34777 * 120.59429 * 124.62566 * 5 4 2 7 7 O 1.21674 * 120.00225 * 351.02492 * 6 5 4 8 8 C 1.46735 * 119.99453 * 171.02467 * 6 5 4 9 9 C 1.34881 * 125.05177 * 162.58816 * 8 6 5 10 10 C 1.38935 * 113.65342 * 179.97438 * 9 8 6 11 11 C 1.47334 * 122.95981 * 180.02562 * 10 9 8 12 12 N 1.34785 * 119.99745 * 180.02562 * 11 10 9 13 13 O 1.21617 * 120.00462 * 0.02562 * 11 10 9 14 14 C 1.36659 * 114.07606 * 0.02562 * 10 9 8 15 15 S 1.70597 * 110.53341 * 359.72599 * 14 10 9 16 16 C 1.46964 * 118.80846 * 304.64286 * 5 4 2 17 17 C 1.53364 * 108.63898 * 55.22978 * 16 5 4 18 18 H 1.09003 * 109.75087 * 70.39975 * 17 16 5 19 19 C 1.52998 * 109.61267 * 190.82954 * 17 16 5 20 20 N 1.46966 * 108.63532 * 310.57795 * 17 16 5 21 21 C 1.36936 * 120.59440 * 235.20262 * 20 17 16 22 22 H 1.08003 * 119.99943 * 115.09662 * 21 20 17 23 23 C 1.38810 * 120.00009 * 295.09891 * 21 20 17 24 24 N 1.31626 * 120.00159 * 132.30775 * 23 21 20 25 25 Si 1.86798 * 120.00057 * 312.31429 * 23 21 20 26 26 H 1.48504 * 109.47094 * 275.46768 * 25 23 21 27 27 H 1.48494 * 109.47321 * 35.46593 * 25 23 21 28 28 H 1.48496 * 109.47284 * 155.46845 * 25 23 21 29 29 H 1.08998 * 109.46913 * 299.57731 * 1 2 3 30 30 H 1.08998 * 109.46847 * 59.57570 * 1 2 3 31 31 H 1.09000 * 109.47085 * 179.57688 * 1 2 3 32 32 H 1.08996 * 109.74096 * 170.15878 * 4 2 1 33 33 H 1.09003 * 109.66910 * 49.69588 * 4 2 1 34 34 H 1.07998 * 123.17489 * 359.97438 * 9 8 6 35 35 H 0.96996 * 120.00284 * 359.97438 * 12 11 10 36 36 H 0.96995 * 119.99589 * 180.02562 * 12 11 10 37 37 H 1.08003 * 124.73552 * 179.97438 * 14 10 9 38 38 H 1.09002 * 109.61019 * 295.48279 * 16 5 4 39 39 H 1.09003 * 109.75189 * 175.05768 * 16 5 4 40 40 H 1.09002 * 109.46980 * 179.14319 * 19 17 16 41 41 H 1.08998 * 109.47238 * 299.14231 * 19 17 16 42 42 H 1.08993 * 109.46861 * 59.15009 * 19 17 16 43 43 H 0.96999 * 120.00202 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0501 -0.7376 -1.2455 5 7 1.7610 -2.1707 -1.0958 6 6 1.0603 -2.8313 -2.0387 7 8 0.5220 -2.2157 -2.9397 8 6 0.9465 -4.2930 -1.9787 9 6 0.0276 -5.0263 -2.6398 10 6 0.1360 -6.3926 -2.4122 11 6 -0.7629 -7.3822 -3.0316 12 7 -0.6040 -8.6945 -2.7684 13 8 -1.6481 -7.0150 -3.7803 14 6 1.1497 -6.7377 -1.5633 15 16 1.9914 -5.3489 -1.0406 16 6 2.2494 -2.8705 0.1007 17 6 1.7343 -2.1342 1.3436 18 1 0.6587 -2.2824 1.4401 19 6 2.4406 -2.6731 2.5892 20 7 2.0232 -0.7011 1.1939 21 6 2.7344 -0.0296 2.1522 22 1 3.7044 0.3821 1.9155 23 6 2.2087 0.1217 3.4280 24 7 2.9518 -0.1431 4.4817 25 14 0.4467 0.7011 3.6494 26 1 0.4034 2.1846 3.5991 27 1 -0.3978 0.1441 2.5624 28 1 -0.0662 0.2352 4.9628 29 1 -0.3633 0.5072 0.8937 30 1 -0.3633 0.5204 -0.8861 31 1 -0.3633 -1.0276 -0.0076 32 1 3.1258 -0.5891 -1.3390 33 1 1.5493 -0.3544 -2.1346 34 1 -0.7217 -4.5924 -3.2852 35 1 0.1022 -8.9875 -2.1716 36 1 -1.1955 -9.3460 -3.1764 37 1 1.3876 -7.7489 -1.2678 38 1 3.3394 -2.8739 0.1031 39 1 1.8804 -3.8961 0.1040 40 1 2.0839 -2.1379 3.4692 41 1 2.2247 -3.7359 2.6981 42 1 3.5162 -2.5292 2.4877 43 1 2.5843 -0.0376 5.3732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880459916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:48 Heat of formation + Delta-G solvation = 2.959319 kcal Electronic energy + Delta-G solvation = -27785.799308 eV Core-core repulsion = 23959.082197 eV Total energy + Delta-G solvation = -3826.717110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.22374 -39.75272 -37.70825 -36.70466 -34.22837 -34.02128 -33.01914 -31.82458 -30.08815 -28.39462 -26.62002 -26.06678 -25.37396 -23.65031 -22.95832 -21.15354 -20.15617 -19.27080 -18.89340 -18.28683 -17.30837 -17.12428 -16.45075 -16.01041 -15.44713 -15.31602 -15.06833 -14.89195 -14.63690 -14.28231 -13.94106 -13.62487 -13.33201 -13.13537 -12.88683 -12.82728 -12.68703 -12.37923 -12.24500 -11.78204 -11.65116 -11.31831 -11.08818 -11.02883 -10.73904 -10.62157 -10.39682 -10.25013 -10.15186 -10.01453 -10.01405 -9.73215 -9.54964 -9.14981 -8.61748 -8.49667 -8.06495 -6.55049 -6.20176 -3.77905 0.23162 1.21663 1.55713 1.62342 2.99895 3.10017 3.30374 3.32155 3.39087 3.43582 3.50319 4.43446 4.47464 4.67184 4.67801 4.78481 5.01248 5.04494 5.36056 5.50736 5.57345 5.63486 5.76981 5.81536 5.94742 6.02913 6.07906 6.15360 6.27581 6.33028 6.42784 6.46621 6.48295 6.59875 6.69650 6.87863 7.00936 7.02674 7.08722 7.47442 7.63151 7.80701 7.98309 8.29206 8.56029 8.96576 9.49253 10.21168 10.69978 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.003541 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.911381 B = 7905.901072 C = 8389.585211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 H 0.083 0.917 4 C 0.105 3.895 5 N -0.593 5.593 6 C 0.583 3.417 7 O -0.535 6.535 8 C -0.266 4.266 9 C -0.018 4.018 10 C -0.167 4.167 11 C 0.583 3.417 12 N -0.852 5.852 13 O -0.538 6.538 14 C -0.237 4.237 15 S 0.289 5.711 16 C 0.088 3.912 17 C 0.164 3.836 18 H 0.030 0.970 19 C -0.131 4.131 20 N -0.579 5.579 21 C -0.320 4.320 22 H 0.061 0.939 23 C 0.100 3.900 24 N -0.829 5.829 25 Si 0.811 3.189 26 H -0.283 1.283 27 H -0.247 1.247 28 H -0.298 1.298 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.400 0.600 36 H 0.405 0.595 37 H 0.170 0.830 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.028 0.972 42 H 0.064 0.936 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -15.606 -7.981 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.036 3.964 3 H 0.101 0.899 4 C -0.019 4.019 5 N -0.325 5.325 6 C 0.370 3.630 7 O -0.414 6.414 8 C -0.386 4.386 9 C -0.049 4.049 10 C -0.185 4.185 11 C 0.367 3.633 12 N -0.416 5.416 13 O -0.415 6.415 14 C -0.376 4.376 15 S 0.559 5.441 16 C -0.038 4.038 17 C 0.057 3.943 18 H 0.048 0.952 19 C -0.188 4.188 20 N -0.303 5.303 21 C -0.447 4.447 22 H 0.079 0.921 23 C -0.110 4.110 24 N -0.460 5.460 25 Si 0.636 3.364 26 H -0.209 1.209 27 H -0.171 1.171 28 H -0.225 1.225 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.178 0.822 35 H 0.228 0.772 36 H 0.236 0.764 37 H 0.188 0.812 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.592 -14.634 -7.736 16.564 hybrid contribution -2.235 -0.533 -0.374 2.328 sum -1.643 -15.167 -8.110 17.277 Atomic orbital electron populations 1.22382 0.98457 1.00964 1.00796 1.21369 0.91921 0.96074 0.87002 0.89914 1.22357 1.00349 0.78645 1.00503 1.47832 1.53576 1.11024 1.20039 1.16995 0.79041 0.84610 0.82327 1.90796 1.46725 1.67833 1.36050 1.24305 1.05917 0.98331 1.10036 1.20248 0.97274 0.90883 0.96449 1.18940 1.00596 0.94331 1.04640 1.17710 0.83041 0.82358 0.80153 1.43663 1.38152 1.07571 1.52177 1.90850 1.33853 1.80070 1.36766 1.26726 1.02093 1.07075 1.01745 1.83772 1.30238 0.90982 1.39104 1.22945 1.00164 0.93817 0.86877 1.20998 0.96299 0.85475 0.91496 0.95203 1.21776 1.01876 0.96827 0.98370 1.44111 1.63299 1.02292 1.20585 1.18020 0.99340 1.38159 0.89135 0.92136 1.25946 0.96149 0.93296 0.95635 1.70381 1.39351 1.37209 0.99098 0.87814 0.90298 0.80835 0.77436 1.20927 1.17143 1.22476 0.92069 0.93931 0.93885 0.91363 0.89699 0.82223 0.77171 0.76422 0.81211 0.90241 0.91627 0.90042 0.95285 0.91648 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 9.04 37.16 0.34 -2.91 16 2 C 0.14 2.76 3.33 -67.25 -0.22 2.54 16 3 H 0.08 1.61 7.93 -51.93 -0.41 1.20 16 4 C 0.10 1.81 6.00 -3.37 -0.02 1.79 16 5 N -0.59 -10.03 2.59 -173.74 -0.45 -10.48 16 6 C 0.58 10.11 7.61 -12.83 -0.10 10.01 16 7 O -0.53 -10.77 16.30 5.21 0.08 -10.69 16 8 C -0.27 -3.82 6.00 -37.34 -0.22 -4.05 16 9 C -0.02 -0.25 9.50 -40.51 -0.39 -0.63 16 10 C -0.17 -1.94 5.82 -106.51 -0.62 -2.56 16 11 C 0.58 6.83 8.06 -12.56 -0.10 6.73 16 12 N -0.85 -5.70 8.84 30.41 0.27 -5.43 16 13 O -0.54 -8.61 17.53 5.26 0.09 -8.52 16 14 C -0.24 -2.04 10.41 30.16 0.31 -1.73 16 15 S 0.29 2.96 18.60 -107.50 -2.00 0.96 16 16 C 0.09 1.40 4.96 -3.60 -0.02 1.38 16 17 C 0.16 3.14 3.17 -67.49 -0.21 2.93 16 18 H 0.03 0.61 7.39 -51.93 -0.38 0.23 16 19 C -0.13 -2.50 8.15 37.16 0.30 -2.19 16 20 N -0.58 -12.38 1.94 -156.76 -0.30 -12.68 16 21 C -0.32 -7.87 8.10 -15.06 -0.12 -7.99 16 22 H 0.06 1.65 8.06 -52.48 -0.42 1.23 16 23 C 0.10 2.52 3.33 -17.43 -0.06 2.47 16 24 N -0.83 -21.62 13.37 55.49 0.74 -20.87 16 25 Si 0.81 19.23 28.43 -169.99 -4.83 14.39 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.25 -5.76 4.88 56.52 0.28 -5.49 16 28 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 29 H 0.06 1.28 5.06 -51.93 -0.26 1.01 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.86 7.01 -51.93 -0.36 0.50 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.47 6.98 -51.93 -0.36 1.10 16 34 H 0.16 2.48 7.98 -52.49 -0.42 2.06 16 35 H 0.40 1.44 7.29 -40.82 -0.30 1.14 16 36 H 0.40 2.16 8.93 -40.82 -0.36 1.79 16 37 H 0.17 0.76 6.99 -52.48 -0.37 0.40 16 38 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 39 H 0.07 0.90 3.32 -19.51 -0.06 0.84 16 40 H 0.08 1.82 5.48 -51.93 -0.28 1.53 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.32 7.91 -51.93 -0.41 0.91 16 43 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -31.32 351.35 -7.60 -38.92 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.37 Total: 3.32 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.13 Total: 5.79 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.26 Total: -49.47 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.18 Total: -19.21 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.83 Total: 14.39 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.00 Total: 0.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.32 -7.60 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.882 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds