Wall clock time and date at job start Tue Mar 31 2020 20:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.74698 * 2 1 4 4 C 1.53812 * 109.75962 * 239.36596 * 2 1 3 5 5 N 1.46962 * 108.58007 * 289.95391 * 4 2 1 6 6 C 1.34777 * 120.59429 * 124.62566 * 5 4 2 7 7 O 1.21674 * 120.00225 * 351.02492 * 6 5 4 8 8 C 1.46735 * 119.99453 * 171.02467 * 6 5 4 9 9 C 1.34881 * 125.05177 * 162.58816 * 8 6 5 10 10 C 1.38935 * 113.65342 * 179.97438 * 9 8 6 11 11 C 1.47334 * 122.95981 * 180.02562 * 10 9 8 12 12 N 1.34785 * 119.99745 * 180.02562 * 11 10 9 13 13 O 1.21617 * 120.00462 * 0.02562 * 11 10 9 14 14 C 1.36659 * 114.07606 * 0.02562 * 10 9 8 15 15 S 1.70597 * 110.53341 * 359.72599 * 14 10 9 16 16 C 1.46964 * 118.80846 * 304.64286 * 5 4 2 17 17 C 1.53364 * 108.63898 * 55.22978 * 16 5 4 18 18 H 1.09003 * 109.75087 * 70.39975 * 17 16 5 19 19 C 1.52998 * 109.61267 * 190.82954 * 17 16 5 20 20 N 1.46966 * 108.63532 * 310.57795 * 17 16 5 21 21 C 1.36936 * 120.59440 * 235.20262 * 20 17 16 22 22 H 1.08003 * 119.99943 * 115.09662 * 21 20 17 23 23 C 1.38810 * 120.00009 * 295.09891 * 21 20 17 24 24 N 1.31626 * 120.00159 * 132.30775 * 23 21 20 25 25 Si 1.86798 * 120.00057 * 312.31429 * 23 21 20 26 26 H 1.48504 * 109.47094 * 275.46768 * 25 23 21 27 27 H 1.48494 * 109.47321 * 35.46593 * 25 23 21 28 28 H 1.48496 * 109.47284 * 155.46845 * 25 23 21 29 29 H 1.08998 * 109.46913 * 299.57731 * 1 2 3 30 30 H 1.08998 * 109.46847 * 59.57570 * 1 2 3 31 31 H 1.09000 * 109.47085 * 179.57688 * 1 2 3 32 32 H 1.08996 * 109.74096 * 170.15878 * 4 2 1 33 33 H 1.09003 * 109.66910 * 49.69588 * 4 2 1 34 34 H 1.07998 * 123.17489 * 359.97438 * 9 8 6 35 35 H 0.96996 * 120.00284 * 359.97438 * 12 11 10 36 36 H 0.96995 * 119.99589 * 180.02562 * 12 11 10 37 37 H 1.08003 * 124.73552 * 179.97438 * 14 10 9 38 38 H 1.09002 * 109.61019 * 295.48279 * 16 5 4 39 39 H 1.09003 * 109.75189 * 175.05768 * 16 5 4 40 40 H 1.09002 * 109.46980 * 179.14319 * 19 17 16 41 41 H 1.08998 * 109.47238 * 299.14231 * 19 17 16 42 42 H 1.08993 * 109.46861 * 59.15009 * 19 17 16 43 43 H 0.96999 * 120.00202 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0501 -0.7376 -1.2455 5 7 1.7610 -2.1707 -1.0958 6 6 1.0603 -2.8313 -2.0387 7 8 0.5220 -2.2157 -2.9397 8 6 0.9465 -4.2930 -1.9787 9 6 0.0276 -5.0263 -2.6398 10 6 0.1360 -6.3926 -2.4122 11 6 -0.7629 -7.3822 -3.0316 12 7 -0.6040 -8.6945 -2.7684 13 8 -1.6481 -7.0150 -3.7803 14 6 1.1497 -6.7377 -1.5633 15 16 1.9914 -5.3489 -1.0406 16 6 2.2494 -2.8705 0.1007 17 6 1.7343 -2.1342 1.3436 18 1 0.6587 -2.2824 1.4401 19 6 2.4406 -2.6731 2.5892 20 7 2.0232 -0.7011 1.1939 21 6 2.7344 -0.0296 2.1522 22 1 3.7044 0.3821 1.9155 23 6 2.2087 0.1217 3.4280 24 7 2.9518 -0.1431 4.4817 25 14 0.4467 0.7011 3.6494 26 1 0.4034 2.1846 3.5991 27 1 -0.3978 0.1441 2.5624 28 1 -0.0662 0.2352 4.9628 29 1 -0.3633 0.5072 0.8937 30 1 -0.3633 0.5204 -0.8861 31 1 -0.3633 -1.0276 -0.0076 32 1 3.1258 -0.5891 -1.3390 33 1 1.5493 -0.3544 -2.1346 34 1 -0.7217 -4.5924 -3.2852 35 1 0.1022 -8.9875 -2.1716 36 1 -1.1955 -9.3460 -3.1764 37 1 1.3876 -7.7489 -1.2678 38 1 3.3394 -2.8739 0.1031 39 1 1.8804 -3.8961 0.1040 40 1 2.0839 -2.1379 3.4692 41 1 2.2247 -3.7359 2.6981 42 1 3.5162 -2.5292 2.4877 43 1 2.5843 -0.0376 5.3732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880459916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:48 Heat of formation + Delta-G solvation = -19.711642 kcal Electronic energy + Delta-G solvation = -27786.782394 eV Core-core repulsion = 23959.082197 eV Total energy + Delta-G solvation = -3827.700197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43257 -40.81154 -39.11477 -37.79386 -35.81869 -34.84489 -34.52946 -33.60101 -31.13030 -30.06263 -27.99526 -27.42517 -26.41572 -25.31534 -24.16483 -22.60949 -21.31046 -20.41708 -20.15965 -19.55175 -18.34044 -18.13005 -17.85602 -17.34393 -16.82047 -16.63161 -16.39437 -16.14632 -15.88659 -15.54023 -15.49502 -15.02714 -14.65151 -14.49342 -14.42902 -14.00026 -13.85737 -13.75505 -13.72142 -13.33417 -12.97482 -12.90617 -12.75349 -12.50464 -12.40419 -12.12803 -11.92786 -11.82189 -11.64629 -11.37570 -11.13043 -11.07924 -10.75167 -10.23985 -10.09293 -9.71532 -9.50987 -8.47803 -7.97911 -5.72032 -0.67276 0.28530 0.56349 0.71149 1.36600 1.48889 1.56241 1.77062 1.96114 2.33483 2.48054 2.57197 2.82880 3.35338 3.43687 3.91863 3.99803 4.05087 4.06183 4.14346 4.19859 4.38720 4.46931 4.48659 4.60668 4.70696 4.75138 4.79022 4.89556 4.97051 4.97839 4.99845 5.10789 5.18976 5.30926 5.49747 5.51011 5.85543 5.85577 5.92815 6.31804 6.40625 6.53582 6.96916 7.22422 7.28282 7.59255 8.34274 8.77677 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.003541 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.911381 B = 7905.901072 C = 8389.585211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.078 0.922 4 C 0.112 3.888 5 N -0.596 5.596 6 C 0.582 3.418 7 O -0.574 6.574 8 C -0.307 4.307 9 C -0.022 4.022 10 C -0.191 4.191 11 C 0.581 3.419 12 N -0.824 5.824 13 O -0.594 6.594 14 C -0.193 4.193 15 S 0.343 5.657 16 C 0.097 3.903 17 C 0.159 3.841 18 H 0.019 0.981 19 C -0.122 4.122 20 N -0.589 5.589 21 C -0.309 4.309 22 H 0.030 0.970 23 C 0.077 3.923 24 N -0.856 5.856 25 Si 0.851 3.149 26 H -0.292 1.292 27 H -0.243 1.243 28 H -0.303 1.303 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.419 0.581 36 H 0.414 0.586 37 H 0.224 0.776 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 -19.033 -7.902 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.096 0.904 4 C -0.011 4.011 5 N -0.326 5.326 6 C 0.371 3.629 7 O -0.456 6.456 8 C -0.426 4.426 9 C -0.054 4.054 10 C -0.207 4.207 11 C 0.365 3.635 12 N -0.388 5.388 13 O -0.476 6.476 14 C -0.333 4.333 15 S 0.612 5.388 16 C -0.029 4.029 17 C 0.053 3.947 18 H 0.037 0.963 19 C -0.180 4.180 20 N -0.313 5.313 21 C -0.437 4.437 22 H 0.047 0.953 23 C -0.131 4.131 24 N -0.489 5.489 25 Si 0.678 3.322 26 H -0.219 1.219 27 H -0.167 1.167 28 H -0.231 1.231 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.149 0.851 35 H 0.251 0.749 36 H 0.247 0.753 37 H 0.241 0.759 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.336 -18.117 -7.636 19.706 hybrid contribution -2.415 0.417 -0.409 2.484 sum -1.078 -17.700 -8.045 19.473 Atomic orbital electron populations 1.22262 0.98400 1.00251 1.00668 1.21389 0.91872 0.96158 0.87209 0.90382 1.22179 1.00730 0.79100 0.99122 1.47868 1.53590 1.10798 1.20389 1.17382 0.77979 0.85945 0.81575 1.90761 1.48214 1.69154 1.37498 1.24070 1.08306 0.97306 1.12945 1.20212 0.96708 0.92534 0.95982 1.18828 1.02253 0.93109 1.06532 1.17796 0.82367 0.83705 0.79586 1.43423 1.38215 1.05879 1.51290 1.90831 1.36205 1.81139 1.39412 1.27196 0.98877 1.08919 0.98266 1.83391 1.28063 0.89960 1.37346 1.22842 1.00693 0.94702 0.84622 1.21051 0.95824 0.84453 0.93352 0.96306 1.21654 1.00643 0.98957 0.96768 1.44211 1.63207 1.03416 1.20436 1.17759 0.98313 1.37882 0.89741 0.95258 1.26173 0.97612 0.93707 0.95605 1.70402 1.40322 1.38840 0.99362 0.87198 0.88289 0.79745 0.77016 1.21941 1.16701 1.23089 0.93632 0.92447 0.94824 0.90439 0.89774 0.85144 0.74899 0.75303 0.75919 0.89122 0.89070 0.93317 0.91232 0.92990 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.08 9.04 71.99 0.65 -5.43 16 2 C 0.14 5.40 3.33 45.18 0.15 5.55 16 3 H 0.08 3.06 7.93 -2.39 -0.02 3.04 16 4 C 0.11 3.83 6.00 86.56 0.52 4.35 16 5 N -0.60 -19.53 2.59 -821.82 -2.13 -21.66 16 6 C 0.58 19.97 7.61 86.46 0.66 20.62 16 7 O -0.57 -23.66 16.30 -4.27 -0.07 -23.73 16 8 C -0.31 -8.39 6.00 23.72 0.14 -8.25 16 9 C -0.02 -0.62 9.50 21.67 0.21 -0.41 16 10 C -0.19 -3.92 5.82 -21.09 -0.12 -4.04 16 11 C 0.58 12.43 8.06 86.64 0.70 13.13 16 12 N -0.82 -7.90 8.84 -175.94 -1.56 -9.46 16 13 O -0.59 -19.05 17.53 -4.09 -0.07 -19.12 16 14 C -0.19 -2.30 10.41 67.45 0.70 -1.60 16 15 S 0.34 5.55 18.60 -56.49 -1.05 4.50 16 16 C 0.10 2.85 4.96 86.41 0.43 3.27 16 17 C 0.16 5.90 3.17 45.02 0.14 6.04 16 18 H 0.02 0.76 7.39 -2.39 -0.02 0.74 16 19 C -0.12 -4.48 8.15 71.98 0.59 -3.89 16 20 N -0.59 -25.04 1.94 -649.87 -1.26 -26.30 16 21 C -0.31 -15.38 8.10 84.03 0.68 -14.70 16 22 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 23 C 0.08 3.94 3.33 84.86 0.28 4.22 16 24 N -0.86 -45.17 13.37 21.65 0.29 -44.88 16 25 Si 0.85 40.13 28.43 68.60 1.95 42.08 16 26 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.24 -11.20 4.88 99.48 0.49 -10.71 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 29 H 0.04 1.89 5.06 -2.39 -0.01 1.87 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.03 1.34 7.01 -2.39 -0.02 1.32 16 32 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.08 2.90 6.98 -2.39 -0.02 2.89 16 34 H 0.13 4.34 7.98 -2.91 -0.02 4.31 16 35 H 0.42 0.69 7.29 -92.71 -0.68 0.01 16 36 H 0.41 3.05 8.93 -92.71 -0.83 2.22 16 37 H 0.22 0.21 6.99 -2.91 -0.02 0.19 16 38 H 0.09 2.51 8.12 -2.39 -0.02 2.49 16 39 H 0.09 2.18 3.32 -23.00 -0.08 2.11 16 40 H 0.05 2.13 5.48 -2.39 -0.01 2.12 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.05 2.02 7.91 -2.39 -0.02 2.00 16 43 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -72.67 351.35 1.11 -71.56 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -0.71 Total: 8.14 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 5.73 Total: 18.86 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -4.66 Total: -102.29 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.14 Total: -42.85 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.95 Total: 42.08 kcal Atomic # 16 Polarization: 5.55 SS G_CDS: -1.05 Total: 4.50 kcal Total: -72.67 1.11 -71.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.847 kcal (2) G-P(sol) polarization free energy of solvation -72.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds