Wall clock time and date at job start Tue Mar 31 2020 20:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.60966 * 2 1 4 4 C 1.53380 * 109.61136 * 120.34198 * 2 1 3 5 5 N 1.46961 * 108.63150 * 70.31672 * 4 2 1 6 6 C 1.34773 * 120.59432 * 235.19941 * 5 4 2 7 7 O 1.21683 * 119.99856 * 353.73594 * 6 5 4 8 8 C 1.46738 * 120.00258 * 174.00704 * 6 5 4 9 9 C 1.34874 * 125.05569 * 230.56218 * 8 6 5 10 10 C 1.38937 * 113.65471 * 179.86366 * 9 8 6 11 11 C 1.47335 * 122.96519 * 180.18791 * 10 9 8 12 12 N 1.34775 * 119.99783 * 180.22430 * 11 10 9 13 13 O 1.21616 * 119.99893 * 0.22927 * 11 10 9 14 14 C 1.36663 * 114.07700 * 0.41989 * 10 9 8 15 15 S 1.70605 * 110.52583 * 359.76979 * 14 10 9 16 16 C 1.46967 * 118.81477 * 55.48357 * 5 4 2 17 17 C 1.53807 * 108.39565 * 304.47857 * 16 5 4 18 18 H 1.09002 * 109.88362 * 289.76529 * 17 16 5 19 19 C 1.52998 * 109.53418 * 169.30235 * 17 16 5 20 20 N 1.46965 * 108.58098 * 49.63720 * 17 16 5 21 21 C 1.36934 * 120.59806 * 124.67003 * 20 17 16 22 22 H 1.08008 * 119.99602 * 317.21174 * 21 20 17 23 23 C 1.38815 * 120.00732 * 137.21208 * 21 20 17 24 24 N 1.31620 * 119.99287 * 339.80827 * 23 21 20 25 25 Si 1.86799 * 120.00175 * 159.80560 * 23 21 20 26 26 H 1.48495 * 109.47077 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46844 * 120.00232 * 25 23 21 28 28 H 1.48502 * 109.46698 * 239.99736 * 25 23 21 29 29 H 1.09006 * 109.46813 * 299.66040 * 1 2 3 30 30 H 1.08992 * 109.47264 * 59.65810 * 1 2 3 31 31 H 1.09004 * 109.47118 * 179.66074 * 1 2 3 32 32 H 1.09002 * 109.60711 * 310.57493 * 4 2 1 33 33 H 1.08999 * 109.61050 * 190.06311 * 4 2 1 34 34 H 1.08002 * 123.17349 * 359.97438 * 9 8 6 35 35 H 0.96998 * 120.00301 * 0.02562 * 12 11 10 36 36 H 0.97003 * 119.99864 * 180.02562 * 12 11 10 37 37 H 1.07999 * 124.74174 * 179.79049 * 14 10 9 38 38 H 1.09001 * 109.61071 * 64.25970 * 16 5 4 39 39 H 1.08996 * 109.60961 * 184.77131 * 16 5 4 40 40 H 1.09002 * 109.47272 * 314.20477 * 19 17 16 41 41 H 1.08998 * 109.47540 * 74.20578 * 19 17 16 42 42 H 1.09007 * 109.47265 * 194.20778 * 19 17 16 43 43 H 0.97003 * 119.99797 * 185.13748 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0448 -0.7299 1.2469 5 7 1.7605 -2.1644 1.1021 6 6 1.0606 -2.8238 2.0464 7 8 0.7562 -2.2614 3.0817 8 6 0.6708 -4.2216 1.8288 9 6 -0.5767 -4.7108 1.9823 10 6 -0.6800 -6.0694 1.7105 11 6 -1.9483 -6.8126 1.8094 12 7 -1.9793 -8.1320 1.5361 13 8 -2.9673 -6.2354 2.1374 14 6 0.4996 -6.6568 1.3484 15 16 1.7611 -5.5082 1.3367 16 6 2.2586 -2.8686 -0.0878 17 6 1.7390 -2.1376 -1.3374 18 1 0.6641 -2.2895 -1.4356 19 6 2.4497 -2.6791 -2.5794 20 7 2.0232 -0.7030 -1.1927 21 6 2.7344 -0.0331 -2.1521 22 1 3.6119 -0.4866 -2.5890 23 6 2.3276 1.2288 -2.5633 24 7 1.0886 1.6210 -2.3552 25 14 3.5387 2.3702 -3.4118 26 1 4.8576 1.6971 -3.5244 27 1 3.0359 2.7053 -4.7683 28 1 3.6854 3.6158 -2.6166 29 1 -0.3633 0.5086 0.8931 30 1 -0.3633 0.5191 -0.8868 31 1 -0.3633 -1.0277 -0.0061 32 1 1.5384 -0.3441 2.1317 33 1 3.1199 -0.5777 1.3421 34 1 -1.4165 -4.1034 2.2859 35 1 -1.1665 -8.5924 1.2747 36 1 -2.8144 -8.6212 1.6008 37 1 0.6169 -7.7021 1.1034 38 1 3.3486 -2.8652 -0.0855 39 1 1.8935 -3.8956 -0.0847 40 1 3.5197 -2.7497 -2.3839 41 1 2.0584 -3.6676 -2.8200 42 1 2.2774 -2.0058 -3.4191 43 1 0.7834 2.4716 -2.7078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880459917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:51 Heat of formation + Delta-G solvation = -7.081881 kcal Electronic energy + Delta-G solvation = -27736.330059 eV Core-core repulsion = 23909.177529 eV Total energy + Delta-G solvation = -3827.152530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.20140 -39.65424 -37.55111 -36.73501 -34.08955 -33.99528 -32.73286 -31.55613 -30.00408 -27.96932 -26.47055 -26.01077 -25.32413 -23.75214 -22.88945 -20.91017 -20.16797 -19.31796 -18.89808 -18.22424 -17.28939 -17.10356 -16.37793 -15.71536 -15.42637 -15.15275 -15.02279 -14.77986 -14.44833 -14.16427 -13.75784 -13.59701 -13.32058 -13.10895 -12.95384 -12.75102 -12.52568 -12.01151 -11.78104 -11.65278 -11.43844 -11.17306 -11.02218 -10.82134 -10.66814 -10.62506 -10.29187 -10.26296 -10.13018 -9.99875 -9.89148 -9.85554 -9.44506 -9.11484 -8.67305 -8.52702 -8.24295 -6.49981 -5.88352 -3.44375 0.27636 1.11247 1.54065 1.68318 2.95026 3.14587 3.29355 3.30610 3.39724 3.40719 3.46526 4.38951 4.48741 4.70157 4.79157 5.00593 5.11777 5.24123 5.55924 5.57240 5.60789 5.77459 5.84383 5.98376 6.02112 6.15496 6.18699 6.21789 6.32414 6.44669 6.48024 6.52431 6.71903 6.82679 6.95637 6.98255 7.01979 7.11913 7.36673 7.63061 7.75001 7.86769 7.99548 8.36936 8.47453 9.11595 9.70343 10.38289 11.16016 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.003296 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.977966 B = 8492.632409 C = 8690.929097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.184 3.816 3 H 0.084 0.916 4 C 0.095 3.905 5 N -0.583 5.583 6 C 0.580 3.420 7 O -0.535 6.535 8 C -0.247 4.247 9 C -0.032 4.032 10 C -0.157 4.157 11 C 0.584 3.416 12 N -0.851 5.851 13 O -0.535 6.535 14 C -0.225 4.225 15 S 0.266 5.734 16 C 0.083 3.917 17 C 0.156 3.844 18 H 0.033 0.967 19 C -0.136 4.136 20 N -0.575 5.575 21 C -0.269 4.269 22 H 0.062 0.938 23 C 0.024 3.976 24 N -0.881 5.881 25 Si 0.895 3.105 26 H -0.276 1.276 27 H -0.290 1.290 28 H -0.288 1.288 29 H 0.027 0.973 30 H 0.088 0.912 31 H 0.026 0.974 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.159 0.841 35 H 0.399 0.601 36 H 0.405 0.595 37 H 0.174 0.826 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -19.093 4.767 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.077 3.923 3 H 0.102 0.898 4 C -0.028 4.028 5 N -0.314 5.314 6 C 0.366 3.634 7 O -0.414 6.414 8 C -0.367 4.367 9 C -0.062 4.062 10 C -0.175 4.175 11 C 0.368 3.632 12 N -0.415 5.415 13 O -0.412 6.412 14 C -0.365 4.365 15 S 0.534 5.466 16 C -0.042 4.042 17 C 0.049 3.951 18 H 0.050 0.950 19 C -0.194 4.194 20 N -0.298 5.298 21 C -0.399 4.399 22 H 0.080 0.920 23 C -0.178 4.178 24 N -0.522 5.522 25 Si 0.725 3.275 26 H -0.200 1.200 27 H -0.217 1.217 28 H -0.214 1.214 29 H 0.046 0.954 30 H 0.107 0.893 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.176 0.824 35 H 0.228 0.772 36 H 0.236 0.764 37 H 0.191 0.809 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.465 -18.107 5.201 18.999 hybrid contribution -1.016 0.066 -0.382 1.088 sum 1.448 -18.040 4.819 18.729 Atomic orbital electron populations 1.22132 0.97766 0.99476 1.01704 1.20624 0.92716 0.95426 0.83555 0.89820 1.22557 1.00369 0.78494 1.01402 1.47894 1.52270 1.10831 1.20377 1.17018 0.78822 0.83859 0.83720 1.90806 1.56103 1.68220 1.26302 1.24245 0.98683 0.99234 1.14538 1.20168 0.96790 0.93286 0.95954 1.18954 0.93736 0.94620 1.10223 1.17648 0.87666 0.81860 0.76054 1.43656 1.14970 1.09800 1.73105 1.90861 1.34814 1.68518 1.46999 1.26137 0.98295 1.05574 1.06452 1.83248 1.09311 0.94803 1.59207 1.22905 0.99178 0.95380 0.86741 1.20852 0.96472 0.86835 0.90966 0.94975 1.21795 0.99519 0.99008 0.99092 1.44039 1.63376 1.02815 1.19594 1.18901 1.04835 0.98677 1.17464 0.92033 1.25402 0.95090 0.99919 0.97365 1.69944 1.14085 1.21734 1.46404 0.86368 0.81273 0.81068 0.78827 1.20043 1.21656 1.21430 0.95395 0.89286 0.95504 0.89901 0.91793 0.82384 0.77201 0.76359 0.80896 0.91028 0.91145 0.93235 0.94318 0.90381 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.04 37.16 0.34 -3.07 16 2 C 0.18 4.07 2.40 -67.48 -0.16 3.91 16 3 H 0.08 2.04 7.19 -51.93 -0.37 1.67 16 4 C 0.09 1.83 5.95 -3.59 -0.02 1.81 16 5 N -0.58 -10.46 2.60 -173.74 -0.45 -10.91 16 6 C 0.58 10.50 7.49 -12.83 -0.10 10.41 16 7 O -0.54 -11.30 16.54 5.20 0.09 -11.22 16 8 C -0.25 -3.63 5.31 -37.34 -0.20 -3.83 16 9 C -0.03 -0.46 9.72 -40.52 -0.39 -0.86 16 10 C -0.16 -1.83 5.82 -106.51 -0.62 -2.45 16 11 C 0.58 6.89 8.06 -12.56 -0.10 6.78 16 12 N -0.85 -5.64 8.84 30.41 0.27 -5.37 16 13 O -0.53 -8.69 17.53 5.26 0.09 -8.60 16 14 C -0.23 -1.88 10.41 30.16 0.31 -1.57 16 15 S 0.27 2.65 20.12 -107.50 -2.16 0.49 16 16 C 0.08 1.35 5.51 -3.37 -0.02 1.33 16 17 C 0.16 3.01 3.24 -67.26 -0.22 2.79 16 18 H 0.03 0.69 7.38 -51.93 -0.38 0.30 16 19 C -0.14 -2.33 8.22 37.16 0.31 -2.03 16 20 N -0.58 -13.04 2.57 -156.76 -0.40 -13.45 16 21 C -0.27 -6.66 7.77 -15.06 -0.12 -6.77 16 22 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 23 C 0.02 0.63 4.79 -17.43 -0.08 0.54 16 24 N -0.88 -23.74 10.94 55.49 0.61 -23.14 16 25 Si 0.90 20.29 29.60 -169.99 -5.03 15.26 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 2.24 6.54 -51.93 -0.34 1.90 16 31 H 0.03 0.59 7.00 -51.93 -0.36 0.22 16 32 H 0.08 1.62 7.00 -51.93 -0.36 1.26 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.16 2.52 7.98 -52.49 -0.42 2.10 16 35 H 0.40 1.35 7.29 -40.82 -0.30 1.05 16 36 H 0.41 2.16 8.93 -40.82 -0.36 1.79 16 37 H 0.17 0.70 6.99 -52.49 -0.37 0.33 16 38 H 0.07 1.11 7.99 -51.93 -0.41 0.70 16 39 H 0.07 0.97 4.07 -32.98 -0.13 0.83 16 40 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 1.54 7.00 -51.92 -0.36 1.18 16 43 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -32.45 356.79 -8.06 -40.50 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.36 Total: 4.05 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.07 Total: 7.00 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.02 Total: -52.86 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.16 Total: 0.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.45 -8.06 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.421 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds