Wall clock time and date at job start Tue Mar 31 2020 20:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.60966 * 2 1 4 4 C 1.53380 * 109.61136 * 120.34198 * 2 1 3 5 5 N 1.46961 * 108.63150 * 70.31672 * 4 2 1 6 6 C 1.34773 * 120.59432 * 235.19941 * 5 4 2 7 7 O 1.21683 * 119.99856 * 353.73594 * 6 5 4 8 8 C 1.46738 * 120.00258 * 174.00704 * 6 5 4 9 9 C 1.34874 * 125.05569 * 230.56218 * 8 6 5 10 10 C 1.38937 * 113.65471 * 179.86366 * 9 8 6 11 11 C 1.47335 * 122.96519 * 180.18791 * 10 9 8 12 12 N 1.34775 * 119.99783 * 180.22430 * 11 10 9 13 13 O 1.21616 * 119.99893 * 0.22927 * 11 10 9 14 14 C 1.36663 * 114.07700 * 0.41989 * 10 9 8 15 15 S 1.70605 * 110.52583 * 359.76979 * 14 10 9 16 16 C 1.46967 * 118.81477 * 55.48357 * 5 4 2 17 17 C 1.53807 * 108.39565 * 304.47857 * 16 5 4 18 18 H 1.09002 * 109.88362 * 289.76529 * 17 16 5 19 19 C 1.52998 * 109.53418 * 169.30235 * 17 16 5 20 20 N 1.46965 * 108.58098 * 49.63720 * 17 16 5 21 21 C 1.36934 * 120.59806 * 124.67003 * 20 17 16 22 22 H 1.08008 * 119.99602 * 317.21174 * 21 20 17 23 23 C 1.38815 * 120.00732 * 137.21208 * 21 20 17 24 24 N 1.31620 * 119.99287 * 339.80827 * 23 21 20 25 25 Si 1.86799 * 120.00175 * 159.80560 * 23 21 20 26 26 H 1.48495 * 109.47077 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46844 * 120.00232 * 25 23 21 28 28 H 1.48502 * 109.46698 * 239.99736 * 25 23 21 29 29 H 1.09006 * 109.46813 * 299.66040 * 1 2 3 30 30 H 1.08992 * 109.47264 * 59.65810 * 1 2 3 31 31 H 1.09004 * 109.47118 * 179.66074 * 1 2 3 32 32 H 1.09002 * 109.60711 * 310.57493 * 4 2 1 33 33 H 1.08999 * 109.61050 * 190.06311 * 4 2 1 34 34 H 1.08002 * 123.17349 * 359.97438 * 9 8 6 35 35 H 0.96998 * 120.00301 * 0.02562 * 12 11 10 36 36 H 0.97003 * 119.99864 * 180.02562 * 12 11 10 37 37 H 1.07999 * 124.74174 * 179.79049 * 14 10 9 38 38 H 1.09001 * 109.61071 * 64.25970 * 16 5 4 39 39 H 1.08996 * 109.60961 * 184.77131 * 16 5 4 40 40 H 1.09002 * 109.47272 * 314.20477 * 19 17 16 41 41 H 1.08998 * 109.47540 * 74.20578 * 19 17 16 42 42 H 1.09007 * 109.47265 * 194.20778 * 19 17 16 43 43 H 0.97003 * 119.99797 * 185.13748 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0448 -0.7299 1.2469 5 7 1.7605 -2.1644 1.1021 6 6 1.0606 -2.8238 2.0464 7 8 0.7562 -2.2614 3.0817 8 6 0.6708 -4.2216 1.8288 9 6 -0.5767 -4.7108 1.9823 10 6 -0.6800 -6.0694 1.7105 11 6 -1.9483 -6.8126 1.8094 12 7 -1.9793 -8.1320 1.5361 13 8 -2.9673 -6.2354 2.1374 14 6 0.4996 -6.6568 1.3484 15 16 1.7611 -5.5082 1.3367 16 6 2.2586 -2.8686 -0.0878 17 6 1.7390 -2.1376 -1.3374 18 1 0.6641 -2.2895 -1.4356 19 6 2.4497 -2.6791 -2.5794 20 7 2.0232 -0.7030 -1.1927 21 6 2.7344 -0.0331 -2.1521 22 1 3.6119 -0.4866 -2.5890 23 6 2.3276 1.2288 -2.5633 24 7 1.0886 1.6210 -2.3552 25 14 3.5387 2.3702 -3.4118 26 1 4.8576 1.6971 -3.5244 27 1 3.0359 2.7053 -4.7683 28 1 3.6854 3.6158 -2.6166 29 1 -0.3633 0.5086 0.8931 30 1 -0.3633 0.5191 -0.8868 31 1 -0.3633 -1.0277 -0.0061 32 1 1.5384 -0.3441 2.1317 33 1 3.1199 -0.5777 1.3421 34 1 -1.4165 -4.1034 2.2859 35 1 -1.1665 -8.5924 1.2747 36 1 -2.8144 -8.6212 1.6008 37 1 0.6169 -7.7021 1.1034 38 1 3.3486 -2.8652 -0.0855 39 1 1.8935 -3.8956 -0.0847 40 1 3.5197 -2.7497 -2.3839 41 1 2.0584 -3.6676 -2.8200 42 1 2.2774 -2.0058 -3.4191 43 1 0.7834 2.4716 -2.7078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880459917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:50 Heat of formation + Delta-G solvation = -31.020015 kcal Electronic energy + Delta-G solvation = -27737.368094 eV Core-core repulsion = 23909.177529 eV Total energy + Delta-G solvation = -3828.190565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42172 -40.78142 -39.03471 -37.84353 -35.71872 -34.81726 -34.31417 -33.36374 -31.07458 -29.75094 -27.93151 -27.35246 -26.41115 -25.50855 -24.12159 -22.45113 -21.41286 -20.52967 -20.12209 -19.46612 -18.25964 -18.07346 -17.82944 -17.20083 -16.84830 -16.65395 -16.23313 -15.92254 -15.86545 -15.50188 -15.36765 -15.07189 -14.70497 -14.40073 -14.06982 -13.81639 -13.81524 -13.58924 -13.58326 -13.02712 -12.89508 -12.76780 -12.54954 -12.35046 -12.31811 -12.26814 -12.07127 -11.81987 -11.63998 -11.46871 -11.20669 -11.02865 -10.74057 -10.50300 -10.10947 -9.76164 -9.52067 -8.35821 -7.80519 -5.39867 -0.60179 0.17668 0.64648 0.68703 1.47612 1.53271 1.60440 1.61484 2.02531 2.31352 2.52807 2.58225 3.30006 3.41300 3.52101 3.91522 4.06038 4.09433 4.12729 4.14032 4.29384 4.44260 4.53717 4.56508 4.64776 4.71175 4.74857 4.85544 4.92567 4.95259 4.99326 5.06011 5.15405 5.25908 5.44463 5.55679 5.68440 5.71997 5.86642 5.87125 6.34719 6.42299 6.55578 6.96204 7.21418 7.29740 7.84849 8.49457 9.20876 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.003296 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.977966 B = 8492.632409 C = 8690.929097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.187 3.813 3 H 0.055 0.945 4 C 0.106 3.894 5 N -0.587 5.587 6 C 0.580 3.420 7 O -0.578 6.578 8 C -0.295 4.295 9 C -0.039 4.039 10 C -0.185 4.185 11 C 0.581 3.419 12 N -0.822 5.822 13 O -0.595 6.595 14 C -0.181 4.181 15 S 0.339 5.661 16 C 0.093 3.907 17 C 0.149 3.851 18 H 0.008 0.992 19 C -0.128 4.128 20 N -0.589 5.589 21 C -0.262 4.262 22 H 0.068 0.932 23 C -0.027 4.027 24 N -0.915 5.915 25 Si 0.954 3.046 26 H -0.263 1.263 27 H -0.296 1.296 28 H -0.297 1.297 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.022 0.978 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.419 0.581 36 H 0.415 0.585 37 H 0.230 0.770 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 -23.463 4.102 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.079 3.921 3 H 0.073 0.927 4 C -0.018 4.018 5 N -0.317 5.317 6 C 0.368 3.632 7 O -0.459 6.459 8 C -0.415 4.415 9 C -0.070 4.070 10 C -0.202 4.202 11 C 0.366 3.634 12 N -0.387 5.387 13 O -0.476 6.476 14 C -0.320 4.320 15 S 0.607 5.393 16 C -0.032 4.032 17 C 0.042 3.958 18 H 0.025 0.975 19 C -0.186 4.186 20 N -0.312 5.312 21 C -0.392 4.392 22 H 0.086 0.914 23 C -0.225 4.225 24 N -0.557 5.557 25 Si 0.783 3.217 26 H -0.187 1.187 27 H -0.223 1.223 28 H -0.224 1.224 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.142 0.858 35 H 0.252 0.748 36 H 0.247 0.753 37 H 0.247 0.753 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.028 -22.569 4.507 23.557 hybrid contribution -1.797 1.262 -0.181 2.203 sum 3.231 -21.307 4.326 21.981 Atomic orbital electron populations 1.21943 0.98548 0.98625 1.00414 1.20456 0.91976 0.94549 0.85081 0.92690 1.22232 1.00679 0.79566 0.99282 1.47936 1.52568 1.10165 1.21052 1.17481 0.77597 0.85257 0.82906 1.90767 1.57387 1.69740 1.28020 1.23969 1.00412 0.99014 1.18063 1.20112 0.96009 0.94832 0.96077 1.18794 0.95111 0.93465 1.12795 1.17762 0.86919 0.83128 0.75626 1.43402 1.16497 1.07947 1.70821 1.90839 1.36646 1.70041 1.50120 1.26742 0.96085 1.07698 1.01503 1.82939 1.07155 0.92025 1.57150 1.22909 1.00043 0.96082 0.84119 1.21047 0.95652 0.85192 0.93880 0.97468 1.21710 1.00353 0.99996 0.96501 1.44244 1.63316 1.04294 1.19358 1.19166 1.04742 0.98604 1.16679 0.91407 1.26046 0.96197 1.01459 0.98801 1.70093 1.15671 1.21737 1.48244 0.85442 0.80001 0.79040 0.77245 1.18670 1.22323 1.22419 0.94913 0.92230 0.95917 0.90693 0.90657 0.85780 0.74810 0.75282 0.75321 0.89235 0.88253 0.91748 0.90657 0.93484 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.45 9.04 71.98 0.65 -5.80 16 2 C 0.19 8.55 2.40 45.03 0.11 8.65 16 3 H 0.05 2.81 7.19 -2.39 -0.02 2.80 16 4 C 0.11 4.17 5.95 86.42 0.51 4.68 16 5 N -0.59 -20.77 2.60 -821.80 -2.14 -22.91 16 6 C 0.58 21.10 7.49 86.46 0.65 21.74 16 7 O -0.58 -25.30 16.54 -4.29 -0.07 -25.37 16 8 C -0.30 -8.36 5.31 23.72 0.13 -8.23 16 9 C -0.04 -1.13 9.72 21.66 0.21 -0.92 16 10 C -0.18 -3.87 5.82 -21.09 -0.12 -3.99 16 11 C 0.58 12.77 8.06 86.64 0.70 13.47 16 12 N -0.82 -7.94 8.84 -175.95 -1.56 -9.49 16 13 O -0.59 -19.76 17.53 -4.08 -0.07 -19.83 16 14 C -0.18 -2.03 10.41 67.45 0.70 -1.33 16 15 S 0.34 5.17 20.12 -56.49 -1.14 4.03 16 16 C 0.09 2.77 5.51 86.56 0.48 3.24 16 17 C 0.15 5.58 3.24 45.17 0.15 5.73 16 18 H 0.01 0.32 7.38 -2.39 -0.02 0.30 16 19 C -0.13 -4.05 8.22 71.98 0.59 -3.46 16 20 N -0.59 -26.88 2.57 -649.87 -1.67 -28.55 16 21 C -0.26 -12.95 7.77 84.03 0.65 -12.30 16 22 H 0.07 3.25 7.06 -2.91 -0.02 3.23 16 23 C -0.03 -1.39 4.79 84.86 0.41 -0.98 16 24 N -0.91 -51.30 10.94 21.65 0.24 -51.06 16 25 Si 0.95 42.40 29.60 68.60 2.03 44.43 16 26 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 27 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 28 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 29 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.06 3.17 6.54 -2.39 -0.02 3.16 16 31 H 0.02 1.04 7.00 -2.39 -0.02 1.02 16 32 H 0.07 3.05 7.00 -2.39 -0.02 3.03 16 33 H 0.08 2.76 8.14 -2.39 -0.02 2.75 16 34 H 0.12 4.36 7.98 -2.91 -0.02 4.33 16 35 H 0.42 0.50 7.29 -92.71 -0.68 -0.18 16 36 H 0.41 3.14 8.93 -92.71 -0.83 2.31 16 37 H 0.23 -0.09 6.99 -2.91 -0.02 -0.11 16 38 H 0.09 2.42 7.99 -2.39 -0.02 2.40 16 39 H 0.10 2.35 4.07 -14.44 -0.06 2.29 16 40 H 0.06 1.84 7.85 -2.39 -0.02 1.82 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.79 7.00 -2.38 -0.02 1.77 16 43 H 0.25 13.71 8.32 -92.71 -0.77 12.94 16 Total: -1.00 -77.84 356.79 0.96 -76.88 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -0.47 Total: 11.36 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 5.81 Total: 20.51 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -5.13 Total: -112.01 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.14 Total: -45.20 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.14 Total: 4.03 kcal Total: -77.84 0.96 -76.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.856 kcal (2) G-P(sol) polarization free energy of solvation -77.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds