Wall clock time and date at job start Tue Mar 31 2020 20:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 108.76783 * 2 1 4 4 C 1.54277 * 108.87493 * 118.50573 * 2 1 3 5 5 N 1.43337 * 113.18152 * 79.82033 * 4 2 1 6 6 C 1.34776 * 121.03695 * 281.93794 * 5 4 2 7 7 O 1.21573 * 120.00461 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99612 * 180.02562 * 6 5 4 9 9 C 1.39252 * 119.99875 * 174.81284 * 8 6 5 10 10 C 1.39685 * 119.57795 * 185.14890 * 9 8 6 11 11 C 1.38642 * 119.49547 * 179.97438 * 10 9 8 12 12 C 1.38354 * 118.67196 * 359.97438 * 11 10 9 13 13 C 1.40569 * 119.12998 * 0.02562 * 12 11 10 14 14 C 1.41333 * 119.78564 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00166 * 0.02562 * 14 13 12 16 16 C 1.40021 * 120.00213 * 180.02562 * 14 13 12 17 17 N 1.30751 * 119.99993 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00337 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47075 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47476 * 120.00205 * 18 16 14 21 21 H 1.48501 * 109.46763 * 240.00250 * 18 16 14 22 22 N 1.31909 * 119.57385 * 4.87279 * 9 8 6 23 23 C 1.49069 * 117.92400 * 101.96320 * 5 4 2 24 24 C 1.44468 * 111.36216 * 275.94414 * 23 5 4 25 25 S 1.82679 * 111.55132 * 60.19251 * 24 23 5 26 26 O 1.42098 * 109.46881 * 40.03833 * 25 24 23 27 27 C 1.54971 * 108.87569 * 241.48599 * 2 1 3 28 28 H 1.08997 * 109.46793 * 301.49378 * 1 2 3 29 29 H 1.08997 * 109.47299 * 61.49438 * 1 2 3 30 30 H 1.08996 * 109.46982 * 181.49322 * 1 2 3 31 31 H 1.09005 * 108.74169 * 318.86908 * 4 2 1 32 32 H 1.08994 * 108.64678 * 200.70818 * 4 2 1 33 33 H 0.96996 * 120.00193 * 354.81227 * 8 6 5 34 34 H 1.07998 * 120.25099 * 359.95419 * 10 9 8 35 35 H 1.07997 * 120.66048 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.43182 * 179.97438 * 12 11 10 37 37 H 0.97001 * 119.99932 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.10410 * 155.46697 * 23 5 4 39 39 H 1.08996 * 109.10694 * 36.42991 * 23 5 4 40 40 H 1.09002 * 109.05303 * 180.69700 * 24 23 5 41 41 H 1.08992 * 109.05818 * 299.67658 * 24 23 5 42 42 H 1.09004 * 108.79144 * 318.87441 * 27 2 1 43 43 H 1.09003 * 108.78871 * 77.20352 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8808 1.0320 0.0000 4 6 2.0292 -0.6967 1.2828 5 7 1.9914 -2.1271 1.1993 6 6 0.8340 -2.8015 1.3482 7 8 -0.1997 -2.1965 1.5565 8 7 0.8227 -4.1468 1.2661 9 6 -0.3505 -4.8504 1.5265 10 6 -0.3272 -6.2469 1.5451 11 6 -1.4961 -6.9457 1.8050 12 6 -2.6578 -6.2319 2.0402 13 6 -2.6163 -4.8272 2.0078 14 6 -3.7949 -4.0844 2.2455 15 1 -4.7235 -4.5961 2.4517 16 6 -3.7589 -2.6850 2.2137 17 7 -2.6350 -2.0655 1.9636 18 14 -5.3165 -1.7031 2.5287 19 1 -6.4451 -2.6337 2.7845 20 1 -5.1189 -0.8270 3.7113 21 1 -5.6240 -0.8680 1.3399 22 7 -1.4683 -4.1894 1.7578 23 6 3.2722 -2.8455 0.9431 24 6 3.5748 -2.8947 -0.4687 25 16 3.7416 -1.2194 -1.1778 26 8 4.4335 -0.3835 -0.2604 27 6 2.0315 -0.7000 -1.2885 28 1 -0.3633 0.5369 0.8763 29 1 -0.3634 0.4904 -0.9030 30 1 -0.3633 -1.0273 0.0268 31 1 1.4068 -0.3782 2.1191 32 1 3.0560 -0.3840 1.4723 33 1 1.6317 -4.6249 1.0257 34 1 0.5942 -6.7783 1.3580 35 1 -1.4996 -8.0254 1.8243 36 1 -3.5845 -6.7474 2.2453 37 1 -2.6100 -1.0960 1.9420 38 1 3.1934 -3.8628 1.3265 39 1 4.0800 -2.3310 1.4633 40 1 4.5091 -3.4370 -0.6137 41 1 2.7735 -3.4219 -0.9862 42 1 1.4095 -1.5751 -1.4774 43 1 1.9288 -0.0096 -2.1258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881143482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:09 Heat of formation + Delta-G solvation = 15.855406 kcal Electronic energy + Delta-G solvation = -28703.262635 eV Core-core repulsion = 24877.104741 eV Total energy + Delta-G solvation = -3826.157894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.07866 -38.13654 -36.32847 -35.51456 -34.84694 -33.82069 -32.87236 -31.03546 -30.28625 -29.03972 -27.18142 -26.18778 -25.28528 -23.33068 -22.06708 -21.28144 -20.26321 -18.70685 -18.14725 -17.55744 -17.00346 -16.55230 -15.88548 -15.70569 -15.15278 -14.74789 -14.56618 -14.41387 -14.05657 -13.72701 -13.57865 -13.48075 -13.44381 -12.81512 -12.58840 -12.20174 -12.05950 -11.98320 -11.90950 -11.80528 -11.46552 -11.20704 -11.05442 -10.93616 -10.72559 -10.62736 -10.47277 -10.41135 -9.94143 -9.89649 -9.64971 -9.04953 -9.01430 -8.38654 -8.08615 -7.94840 -7.20950 -6.94296 -6.11437 -4.38453 1.62564 2.47878 2.82975 3.07947 3.12717 3.18235 3.21158 3.26947 3.70571 4.07270 4.11403 4.27405 4.79265 4.92865 4.93613 4.97969 5.05520 5.13437 5.27956 5.48815 5.65668 5.79162 5.83843 5.94544 6.01225 6.05584 6.11771 6.16279 6.40618 6.45345 6.51506 6.55877 6.78344 6.85185 6.99208 7.10851 7.26910 7.37636 7.61780 7.71701 7.81632 8.16343 8.27487 8.60074 8.79128 9.06787 9.56299 10.26587 10.49445 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.004575 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.922927 B = 6119.281186 C = 7692.317448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.638 5.638 6 C 0.667 3.333 7 O -0.444 6.444 8 N -0.672 5.672 9 C 0.385 3.615 10 C -0.359 4.359 11 C -0.035 4.035 12 C -0.307 4.307 13 C 0.271 3.729 14 C -0.424 4.424 15 H 0.081 0.919 16 C 0.057 3.943 17 N -0.646 5.646 18 Si 0.892 3.108 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.276 1.276 22 N -0.470 5.470 23 C 0.117 3.883 24 C -0.463 4.463 25 S 1.247 4.753 26 O -0.849 6.849 27 C -0.441 4.441 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.393 0.607 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.271 0.729 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.585 1.734 -9.246 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.006 4.006 5 N -0.380 5.380 6 C 0.367 3.633 7 O -0.307 6.307 8 N -0.322 5.322 9 C 0.146 3.854 10 C -0.385 4.385 11 C -0.059 4.059 12 C -0.330 4.330 13 C 0.146 3.854 14 C -0.455 4.455 15 H 0.100 0.900 16 C -0.172 4.172 17 N -0.265 5.265 18 Si 0.717 3.283 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.201 1.201 22 N -0.189 5.189 23 C -0.007 4.007 24 C -0.599 4.599 25 S 1.445 4.555 26 O -0.844 6.844 27 C -0.579 4.579 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.228 0.772 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.140 0.860 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.674 3.895 -9.322 17.001 hybrid contribution -1.211 -0.855 1.833 2.358 sum 12.463 3.040 -7.489 14.854 Atomic orbital electron populations 1.22148 0.93117 1.05738 0.99774 1.21851 0.98195 0.98379 0.92046 0.91320 1.21126 1.02357 0.79524 0.97613 1.47351 1.06259 1.05947 1.78484 1.16343 0.83776 0.82339 0.80855 1.91338 1.27242 1.65150 1.46979 1.42733 1.11738 1.05300 1.72422 1.18367 0.86896 0.86776 0.93397 1.20417 0.98519 0.92352 1.27244 1.20530 0.92650 0.97099 0.95653 1.21618 0.97374 0.95684 1.18314 1.18380 0.90774 0.88186 0.88023 1.19598 0.94599 0.90978 1.40290 0.90038 1.26166 0.96793 0.98723 0.95533 1.70346 1.23446 1.09235 1.23443 0.86515 0.83036 0.80234 0.78528 1.18646 1.20157 1.20128 1.68692 0.95833 1.35045 1.19289 1.19947 0.87421 0.98676 0.94615 1.26734 1.08302 1.20243 1.04669 1.69889 0.85892 0.85787 1.13939 1.93091 1.63318 1.60928 1.67081 1.27791 1.18582 1.08132 1.03424 0.93035 0.94779 0.88461 0.90569 0.89685 0.77214 0.89328 0.88700 0.88659 0.91754 0.90759 0.90502 0.86036 0.86746 0.87189 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.17 37.16 0.30 -2.29 16 2 C -0.08 -1.22 2.86 -88.91 -0.25 -1.48 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.90 4.52 -5.05 -0.02 1.88 16 5 N -0.64 -10.08 2.26 -183.66 -0.41 -10.50 16 6 C 0.67 13.50 7.87 -86.91 -0.68 12.82 16 7 O -0.44 -10.77 8.69 5.30 0.05 -10.72 16 8 N -0.67 -13.23 5.25 -15.78 -0.08 -13.31 16 9 C 0.39 9.31 7.43 -154.99 -1.15 8.16 16 10 C -0.36 -8.01 9.95 -38.89 -0.39 -8.40 16 11 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 12 C -0.31 -7.71 9.83 -38.66 -0.38 -8.09 16 13 C 0.27 7.58 6.55 -85.00 -0.56 7.02 16 14 C -0.42 -11.64 9.14 -37.74 -0.34 -11.99 16 15 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 16 C 0.06 1.50 5.50 -17.34 -0.10 1.41 16 17 N -0.65 -17.62 8.98 55.55 0.50 -17.12 16 18 Si 0.89 19.38 29.56 -169.99 -5.02 14.36 16 19 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 22 N -0.47 -13.01 5.73 -10.26 -0.06 -13.07 16 23 C 0.12 1.38 5.05 -6.59 -0.03 1.35 16 24 C -0.46 -3.85 5.89 33.18 0.20 -3.66 16 25 S 1.25 10.43 13.53 -107.50 -1.45 8.98 16 26 O -0.85 -11.75 15.29 -35.23 -0.54 -12.29 16 27 C -0.44 -4.82 5.22 38.20 0.20 -4.62 16 28 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 2.05 5.12 -51.93 -0.27 1.78 16 31 H 0.08 1.38 7.61 -51.93 -0.40 0.99 16 32 H 0.08 1.33 5.88 -51.93 -0.31 1.03 16 33 H 0.39 6.12 6.49 -40.82 -0.26 5.86 16 34 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 38 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 39 H 0.08 0.93 7.56 -51.93 -0.39 0.53 16 40 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 0.93 8.01 -51.93 -0.42 0.51 16 42 H 0.11 1.31 7.75 -51.50 -0.40 0.91 16 43 H 0.11 0.96 8.14 -51.45 -0.42 0.54 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -35.83 344.45 -11.14 -46.97 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.69 Total: 10.58 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -3.61 Total: -9.07 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.06 Total: -53.99 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.49 Total: -23.01 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 10.43 SS G_CDS: -1.45 Total: 8.98 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.83 -11.14 -46.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.827 kcal (2) G-P(sol) polarization free energy of solvation -35.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds