Wall clock time and date at job start Tue Mar 31 2020 20:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 108.57024 * 2 1 4 4 C 1.53986 * 108.71981 * 118.12451 * 2 1 3 5 5 N 1.44681 * 109.42969 * 201.99418 * 4 2 1 6 6 C 1.34777 * 119.73127 * 81.47632 * 5 4 2 7 7 O 1.21577 * 119.99498 * 4.21754 * 6 5 4 8 8 N 1.34772 * 120.00009 * 183.94372 * 6 5 4 9 9 C 1.39252 * 119.99873 * 174.49923 * 8 6 5 10 10 C 1.39686 * 119.57286 * 22.04332 * 9 8 6 11 11 C 1.38650 * 119.49354 * 179.72501 * 10 9 8 12 12 C 1.38349 * 118.66843 * 0.53631 * 11 10 9 13 13 C 1.40572 * 119.13369 * 359.73197 * 12 11 10 14 14 C 1.41338 * 119.78842 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99804 * 0.02562 * 14 13 12 16 16 C 1.40030 * 119.99697 * 180.02562 * 14 13 12 17 17 N 1.30739 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99725 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47056 * 60.00300 * 18 16 14 20 20 H 1.48499 * 109.47392 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47245 * 300.00504 * 18 16 14 22 22 N 1.31902 * 119.57724 * 202.31195 * 9 8 6 23 23 C 1.46393 * 120.54231 * 261.75355 * 5 4 2 24 24 C 1.53479 * 115.16373 * 42.15138 * 23 5 4 25 25 S 1.79950 * 110.99087 * 43.32121 * 24 23 5 26 26 O 1.42097 * 109.47126 * 159.42124 * 25 24 23 27 27 C 1.45821 * 108.71584 * 241.88107 * 2 1 3 28 28 H 1.09008 * 109.46843 * 301.87311 * 1 2 3 29 29 H 1.08993 * 109.47468 * 61.87660 * 1 2 3 30 30 H 1.09000 * 109.46919 * 181.87876 * 1 2 3 31 31 H 1.08995 * 109.48121 * 82.00335 * 4 2 1 32 32 H 1.09002 * 109.48595 * 321.97787 * 4 2 1 33 33 H 0.97000 * 120.00477 * 354.49885 * 8 6 5 34 34 H 1.07998 * 120.25461 * 359.97438 * 10 9 8 35 35 H 1.07999 * 120.66325 * 180.26308 * 11 10 9 36 36 H 1.08001 * 120.43877 * 179.74662 * 12 11 10 37 37 H 0.97003 * 120.00008 * 180.02562 * 17 16 14 38 38 H 1.09004 * 108.38342 * 163.68549 * 23 5 4 39 39 H 1.08996 * 108.39298 * 280.84539 * 23 5 4 40 40 H 1.09006 * 109.28236 * 282.90346 * 24 23 5 41 41 H 1.08998 * 109.11710 * 163.63508 * 24 23 5 42 42 H 1.08994 * 108.84443 * 294.69999 * 27 2 1 43 43 H 1.08999 * 108.84845 * 53.06571 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8772 1.0332 0.0000 4 6 2.0243 -0.6875 1.2862 5 7 3.3769 -0.2603 1.5710 6 6 3.5895 0.9181 2.1895 7 8 2.6460 1.5814 2.5744 8 7 4.8479 1.3586 2.3863 9 6 5.0664 2.6257 2.9208 10 6 4.0587 3.2430 3.6655 11 6 4.2801 4.5023 4.2018 12 6 5.4979 5.1171 3.9711 13 6 6.4697 4.4462 3.2086 14 6 7.7183 5.0617 2.9640 15 1 7.9234 6.0442 3.3628 16 6 8.6894 4.3976 2.2045 17 7 8.4409 3.2085 1.7213 18 14 10.3393 5.2114 1.8806 19 1 11.0189 5.4840 3.1726 20 1 11.1835 4.3085 1.0576 21 1 10.1270 6.4889 1.1538 22 7 6.2204 3.2299 2.7129 23 6 4.5169 -1.0947 1.1874 24 6 4.4181 -1.7351 -0.2039 25 16 3.8068 -0.5533 -1.4155 26 8 4.1648 -0.9853 -2.7210 27 6 1.9980 -0.6509 -1.2181 28 1 -0.3633 0.5427 0.8728 29 1 -0.3634 0.4844 -0.9063 30 1 -0.3633 -1.0271 0.0337 31 1 2.0055 -1.7688 1.1506 32 1 1.3743 -0.4141 2.1174 33 1 5.6014 0.7930 2.1556 34 1 3.1157 2.7416 3.8257 35 1 3.5157 4.9952 4.7841 36 1 5.6993 6.0996 4.3718 37 1 9.1138 2.7483 1.1955 38 1 5.4179 -0.4821 1.2203 39 1 4.6218 -1.8927 1.9224 40 1 3.7388 -2.5865 -0.1609 41 1 5.4058 -2.0809 -0.5087 42 1 1.7027 -1.6998 -1.1925 43 1 1.5239 -0.1746 -2.0763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881143484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:11 Heat of formation + Delta-G solvation = -2.548596 kcal Electronic energy + Delta-G solvation = -27554.364941 eV Core-core repulsion = 23727.408990 eV Total energy + Delta-G solvation = -3826.955952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57667 -38.32574 -37.00206 -35.79732 -35.18912 -34.20792 -33.16505 -31.05932 -30.37308 -29.21742 -27.58788 -26.60234 -25.35609 -23.70198 -21.89563 -21.57247 -20.78425 -19.35743 -18.24772 -17.70371 -17.36132 -16.87101 -15.96612 -15.86708 -15.52406 -15.10919 -14.70094 -14.67452 -14.40542 -14.11710 -14.01044 -13.56453 -13.37427 -13.24104 -12.88217 -12.79393 -12.52685 -12.33386 -12.00658 -11.90595 -11.89251 -11.46370 -11.26388 -11.20494 -11.06349 -10.93027 -10.84015 -10.63140 -10.16815 -10.10601 -9.85218 -9.25144 -9.03869 -8.74553 -8.25570 -8.00786 -7.66037 -7.08306 -6.39970 -4.48450 1.27663 2.37282 2.65895 2.75855 2.97262 3.09423 3.12197 3.27165 3.59278 3.61006 3.96350 4.04983 4.35503 4.46859 4.63619 4.76618 4.81942 4.98721 5.16957 5.20795 5.29154 5.37065 5.47844 5.52884 5.57652 5.69983 5.91322 5.95229 6.04517 6.10165 6.17533 6.42050 6.50348 6.73262 6.83244 6.97758 7.00189 7.19071 7.51365 7.60509 7.92570 8.03780 8.17423 8.38419 8.71256 8.86646 9.01968 10.06442 10.32532 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.003760 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.313256 B = 7445.150557 C = 8900.966848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.091 0.909 4 C 0.133 3.867 5 N -0.630 5.630 6 C 0.711 3.289 7 O -0.557 6.557 8 N -0.658 5.658 9 C 0.369 3.631 10 C -0.313 4.313 11 C -0.051 4.051 12 C -0.290 4.290 13 C 0.281 3.719 14 C -0.436 4.436 15 H 0.084 0.916 16 C 0.073 3.927 17 N -0.723 5.723 18 Si 0.905 3.095 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.265 1.265 22 N -0.507 5.507 23 C 0.136 3.864 24 C -0.464 4.464 25 S 1.249 4.751 26 O -0.855 6.855 27 C -0.428 4.428 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.403 0.597 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.271 0.729 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.083 0.917 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.633 -10.109 -2.528 13.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.109 0.891 4 C 0.008 3.992 5 N -0.368 5.368 6 C 0.413 3.587 7 O -0.433 6.433 8 N -0.307 5.307 9 C 0.134 3.866 10 C -0.337 4.337 11 C -0.075 4.075 12 C -0.312 4.312 13 C 0.154 3.846 14 C -0.468 4.468 15 H 0.102 0.898 16 C -0.151 4.151 17 N -0.345 5.345 18 Si 0.730 3.270 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.190 1.190 22 N -0.225 5.225 23 C 0.011 3.989 24 C -0.602 4.602 25 S 1.448 4.552 26 O -0.851 6.851 27 C -0.565 4.565 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.241 0.759 34 H 0.157 0.843 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.141 0.859 42 H 0.102 0.898 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.018 -9.702 -3.537 13.073 hybrid contribution -0.186 -1.820 -0.409 1.875 sum -8.204 -11.521 -3.946 14.684 Atomic orbital electron populations 1.21852 0.94083 1.01575 1.02429 1.19924 0.96858 1.01600 0.92386 0.89121 1.21310 0.82482 0.98072 0.97294 1.46842 1.06600 1.20557 1.62836 1.15651 0.83597 0.80539 0.78955 1.90817 1.41846 1.55807 1.54829 1.42477 1.06481 1.16866 1.64879 1.18231 0.92505 0.84268 0.91587 1.21823 1.02514 0.99243 1.10158 1.20830 0.95617 0.94485 0.96609 1.21709 0.96486 1.01902 1.11151 1.18129 0.92255 0.86518 0.87687 1.19517 0.96536 1.02767 1.27992 0.89826 1.25991 1.00037 0.94586 0.94491 1.70090 1.32778 1.10409 1.21272 0.86430 0.81349 0.80011 0.79228 1.19058 1.20354 1.19009 1.68001 1.17895 1.11255 1.25396 1.20903 0.89483 0.95471 0.93017 1.27834 1.10091 1.13098 1.09156 1.71326 0.87407 1.10131 0.86368 1.93066 1.77469 1.81550 1.32968 1.26459 1.20011 1.05851 1.04165 0.91623 0.92586 0.93019 0.90718 0.88849 0.75886 0.84310 0.88464 0.88389 0.91824 0.89212 0.90906 0.88771 0.85880 0.89849 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.93 37.16 0.33 -0.86 16 2 C -0.09 -0.83 2.35 -93.50 -0.22 -1.05 16 3 H 0.09 1.03 7.82 -51.93 -0.41 0.62 16 4 C 0.13 1.28 4.64 -4.50 -0.02 1.26 16 5 N -0.63 -7.16 2.41 -180.03 -0.43 -7.59 16 6 C 0.71 11.44 7.82 -86.92 -0.68 10.76 16 7 O -0.56 -10.59 12.66 5.30 0.07 -10.53 16 8 N -0.66 -11.90 5.29 -15.79 -0.08 -11.99 16 9 C 0.37 8.52 7.50 -154.99 -1.16 7.36 16 10 C -0.31 -7.20 8.90 -38.89 -0.35 -7.54 16 11 C -0.05 -1.15 10.15 -39.39 -0.40 -1.55 16 12 C -0.29 -7.01 9.83 -38.66 -0.38 -7.39 16 13 C 0.28 7.41 6.55 -85.00 -0.56 6.85 16 14 C -0.44 -11.24 9.14 -37.73 -0.34 -11.58 16 15 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 16 C 0.07 1.78 5.50 -17.35 -0.10 1.69 16 17 N -0.72 -17.91 11.46 55.55 0.64 -17.27 16 18 Si 0.91 17.93 29.56 -169.99 -5.02 12.91 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 N -0.51 -13.04 7.89 -10.26 -0.08 -13.12 16 23 C 0.14 1.23 5.92 -3.85 -0.02 1.21 16 24 C -0.46 -4.02 5.87 37.41 0.22 -3.80 16 25 S 1.25 13.71 13.04 -107.50 -1.40 12.31 16 26 O -0.86 -14.32 18.14 -35.23 -0.64 -14.96 16 27 C -0.43 -3.98 4.98 33.76 0.17 -3.81 16 28 H 0.06 0.59 8.11 -51.92 -0.42 0.17 16 29 H 0.06 0.45 8.04 -51.93 -0.42 0.04 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.55 7.52 -51.93 -0.39 0.16 16 32 H 0.09 0.99 7.36 -51.93 -0.38 0.60 16 33 H 0.40 6.41 6.27 -40.82 -0.26 6.16 16 34 H 0.14 3.14 5.18 -52.85 -0.27 2.87 16 35 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.27 6.08 8.29 -40.82 -0.34 5.74 16 38 H 0.09 0.84 5.57 -51.93 -0.29 0.55 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.71 7.91 -51.79 -0.41 0.30 16 41 H 0.12 1.03 8.14 -51.80 -0.42 0.60 16 42 H 0.08 0.71 8.11 -51.93 -0.42 0.28 16 43 H 0.11 1.01 7.99 -51.92 -0.41 0.59 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -33.49 356.41 -10.84 -44.33 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.74 Total: 9.00 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.51 Total: -8.46 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.04 Total: -49.97 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.57 Total: -25.48 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.02 Total: 12.91 kcal Atomic # 16 Polarization: 13.71 SS G_CDS: -1.40 Total: 12.31 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.49 -10.84 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.777 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds