Wall clock time and date at job start Tue Mar 31 2020 20:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 108.57024 * 2 1 4 4 C 1.53986 * 108.71981 * 118.12451 * 2 1 3 5 5 N 1.44681 * 109.42969 * 201.99418 * 4 2 1 6 6 C 1.34777 * 119.73127 * 81.47632 * 5 4 2 7 7 O 1.21577 * 119.99498 * 4.21754 * 6 5 4 8 8 N 1.34772 * 120.00009 * 183.94372 * 6 5 4 9 9 C 1.39252 * 119.99873 * 174.49923 * 8 6 5 10 10 C 1.39686 * 119.57286 * 22.04332 * 9 8 6 11 11 C 1.38650 * 119.49354 * 179.72501 * 10 9 8 12 12 C 1.38349 * 118.66843 * 0.53631 * 11 10 9 13 13 C 1.40572 * 119.13369 * 359.73197 * 12 11 10 14 14 C 1.41338 * 119.78842 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99804 * 0.02562 * 14 13 12 16 16 C 1.40030 * 119.99697 * 180.02562 * 14 13 12 17 17 N 1.30739 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99725 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47056 * 60.00300 * 18 16 14 20 20 H 1.48499 * 109.47392 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47245 * 300.00504 * 18 16 14 22 22 N 1.31902 * 119.57724 * 202.31195 * 9 8 6 23 23 C 1.46393 * 120.54231 * 261.75355 * 5 4 2 24 24 C 1.53479 * 115.16373 * 42.15138 * 23 5 4 25 25 S 1.79950 * 110.99087 * 43.32121 * 24 23 5 26 26 O 1.42097 * 109.47126 * 159.42124 * 25 24 23 27 27 C 1.45821 * 108.71584 * 241.88107 * 2 1 3 28 28 H 1.09008 * 109.46843 * 301.87311 * 1 2 3 29 29 H 1.08993 * 109.47468 * 61.87660 * 1 2 3 30 30 H 1.09000 * 109.46919 * 181.87876 * 1 2 3 31 31 H 1.08995 * 109.48121 * 82.00335 * 4 2 1 32 32 H 1.09002 * 109.48595 * 321.97787 * 4 2 1 33 33 H 0.97000 * 120.00477 * 354.49885 * 8 6 5 34 34 H 1.07998 * 120.25461 * 359.97438 * 10 9 8 35 35 H 1.07999 * 120.66325 * 180.26308 * 11 10 9 36 36 H 1.08001 * 120.43877 * 179.74662 * 12 11 10 37 37 H 0.97003 * 120.00008 * 180.02562 * 17 16 14 38 38 H 1.09004 * 108.38342 * 163.68549 * 23 5 4 39 39 H 1.08996 * 108.39298 * 280.84539 * 23 5 4 40 40 H 1.09006 * 109.28236 * 282.90346 * 24 23 5 41 41 H 1.08998 * 109.11710 * 163.63508 * 24 23 5 42 42 H 1.08994 * 108.84443 * 294.69999 * 27 2 1 43 43 H 1.08999 * 108.84845 * 53.06571 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8772 1.0332 0.0000 4 6 2.0243 -0.6875 1.2862 5 7 3.3769 -0.2603 1.5710 6 6 3.5895 0.9181 2.1895 7 8 2.6460 1.5814 2.5744 8 7 4.8479 1.3586 2.3863 9 6 5.0664 2.6257 2.9208 10 6 4.0587 3.2430 3.6655 11 6 4.2801 4.5023 4.2018 12 6 5.4979 5.1171 3.9711 13 6 6.4697 4.4462 3.2086 14 6 7.7183 5.0617 2.9640 15 1 7.9234 6.0442 3.3628 16 6 8.6894 4.3976 2.2045 17 7 8.4409 3.2085 1.7213 18 14 10.3393 5.2114 1.8806 19 1 11.0189 5.4840 3.1726 20 1 11.1835 4.3085 1.0576 21 1 10.1270 6.4889 1.1538 22 7 6.2204 3.2299 2.7129 23 6 4.5169 -1.0947 1.1874 24 6 4.4181 -1.7351 -0.2039 25 16 3.8068 -0.5533 -1.4155 26 8 4.1648 -0.9853 -2.7210 27 6 1.9980 -0.6509 -1.2181 28 1 -0.3633 0.5427 0.8728 29 1 -0.3634 0.4844 -0.9063 30 1 -0.3633 -1.0271 0.0337 31 1 2.0055 -1.7688 1.1506 32 1 1.3743 -0.4141 2.1174 33 1 5.6014 0.7930 2.1556 34 1 3.1157 2.7416 3.8257 35 1 3.5157 4.9952 4.7841 36 1 5.6993 6.0996 4.3718 37 1 9.1138 2.7483 1.1955 38 1 5.4179 -0.4821 1.2203 39 1 4.6218 -1.8927 1.9224 40 1 3.7388 -2.5865 -0.1609 41 1 5.4058 -2.0809 -0.5087 42 1 1.7027 -1.6998 -1.1925 43 1 1.5239 -0.1746 -2.0763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881143484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:10 Heat of formation + Delta-G solvation = -24.334368 kcal Electronic energy + Delta-G solvation = -27555.309643 eV Core-core repulsion = 23727.408990 eV Total energy + Delta-G solvation = -3827.900653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84241 -39.88858 -38.20920 -36.85714 -36.25628 -35.72624 -34.82342 -32.20612 -31.95822 -30.90687 -28.34700 -27.73951 -26.99625 -24.70154 -23.37292 -23.29644 -21.82553 -20.67724 -19.45857 -19.16196 -18.55373 -18.12369 -17.20352 -16.97578 -16.59410 -16.39921 -16.26955 -16.03080 -15.82384 -15.28933 -15.07110 -14.67048 -14.57173 -14.46801 -14.09353 -14.01971 -13.71344 -13.67440 -13.21745 -12.92610 -12.88962 -12.77900 -12.66146 -12.56332 -12.48185 -12.13824 -12.07441 -11.78938 -11.63333 -11.48340 -11.07854 -10.94273 -10.57719 -9.87396 -9.75634 -9.50208 -9.14381 -8.81995 -8.20634 -6.39453 0.41028 0.94757 1.24125 1.48947 1.50271 1.58796 1.62107 1.63913 2.20520 2.30972 2.70474 2.84412 2.98472 3.57879 3.70280 3.87912 3.98649 4.05853 4.22080 4.40564 4.42851 4.48281 4.51685 4.66740 4.71689 4.77897 4.79970 4.84779 4.94523 4.99521 5.04150 5.14989 5.20564 5.30542 5.34438 5.38662 5.62414 5.74035 5.80483 5.87552 6.12670 6.27094 6.40881 6.81390 6.95093 7.10172 7.59103 8.22705 8.54072 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.003760 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.313256 B = 7445.150557 C = 8900.966848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 H 0.068 0.932 4 C 0.127 3.873 5 N -0.615 5.615 6 C 0.712 3.288 7 O -0.587 6.587 8 N -0.656 5.656 9 C 0.364 3.636 10 C -0.323 4.323 11 C -0.050 4.050 12 C -0.312 4.312 13 C 0.249 3.751 14 C -0.469 4.469 15 H 0.087 0.913 16 C 0.032 3.968 17 N -0.749 5.749 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.264 1.264 22 N -0.530 5.530 23 C 0.132 3.868 24 C -0.445 4.445 25 S 1.231 4.769 26 O -0.919 6.919 27 C -0.412 4.412 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.412 0.588 34 H 0.145 0.855 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.279 0.721 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 -11.794 -2.370 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.086 0.914 4 C 0.004 3.996 5 N -0.352 5.352 6 C 0.414 3.586 7 O -0.465 6.465 8 N -0.306 5.306 9 C 0.128 3.872 10 C -0.348 4.348 11 C -0.074 4.074 12 C -0.334 4.334 13 C 0.122 3.878 14 C -0.501 4.501 15 H 0.105 0.895 16 C -0.190 4.190 17 N -0.371 5.371 18 Si 0.802 3.198 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.188 1.188 22 N -0.250 5.250 23 C 0.008 3.992 24 C -0.585 4.585 25 S 1.435 4.565 26 O -0.915 6.915 27 C -0.550 4.550 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.252 0.748 34 H 0.162 0.838 35 H 0.145 0.855 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.135 0.865 41 H 0.150 0.850 42 H 0.120 0.880 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.269 -11.433 -3.419 14.518 hybrid contribution -0.266 -1.400 -0.391 1.477 sum -8.534 -12.833 -3.810 15.875 Atomic orbital electron populations 1.21829 0.92864 1.02741 1.02258 1.19875 0.97818 1.00357 0.92439 0.91366 1.21563 0.81110 1.00042 0.96923 1.46793 1.08192 1.18903 1.61276 1.15734 0.82366 0.81520 0.78993 1.90776 1.42390 1.57179 1.56192 1.42384 1.07820 1.15478 1.64913 1.18542 0.91817 0.85688 0.91128 1.22071 1.02780 0.99652 1.10284 1.21177 0.95719 0.94405 0.96140 1.21856 0.97008 1.02615 1.11966 1.18589 0.93266 0.87378 0.88531 1.19864 0.97414 1.03435 1.29399 0.89498 1.26794 1.03353 0.95082 0.93779 1.70151 1.34228 1.11437 1.21319 0.85288 0.76519 0.78902 0.79122 1.18642 1.19298 1.18836 1.68028 1.19135 1.11522 1.26295 1.21126 0.88242 0.95873 0.93944 1.27608 1.11003 1.12710 1.07158 1.70661 0.88841 1.11453 0.85559 1.92998 1.79383 1.83292 1.35789 1.26243 1.17631 1.07080 1.04067 0.92306 0.92387 0.91127 0.87129 0.89496 0.74776 0.83763 0.85545 0.87444 0.91037 0.89613 0.87872 0.86528 0.85018 0.87980 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.93 71.98 0.64 -1.40 16 2 C -0.08 -1.45 2.35 -12.66 -0.03 -1.48 16 3 H 0.07 1.52 7.82 -2.39 -0.02 1.50 16 4 C 0.13 2.08 4.64 87.05 0.40 2.49 16 5 N -0.61 -12.66 2.41 -841.76 -2.03 -14.69 16 6 C 0.71 22.34 7.82 179.06 1.40 23.74 16 7 O -0.59 -22.13 12.66 -3.96 -0.05 -22.18 16 8 N -0.66 -23.61 5.29 -322.12 -1.70 -25.31 16 9 C 0.36 17.05 7.50 133.26 1.00 18.05 16 10 C -0.32 -14.97 8.90 22.72 0.20 -14.77 16 11 C -0.05 -2.26 10.15 22.39 0.23 -2.03 16 12 C -0.31 -15.38 9.83 22.87 0.22 -15.16 16 13 C 0.25 13.49 6.55 40.19 0.26 13.76 16 14 C -0.47 -24.74 9.14 23.47 0.21 -24.52 16 15 H 0.09 4.31 7.85 -2.91 -0.02 4.29 16 16 C 0.03 1.57 5.50 85.29 0.47 2.04 16 17 N -0.75 -37.43 11.46 21.84 0.25 -37.18 16 18 Si 0.98 36.70 29.56 68.60 2.03 38.73 16 19 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 20 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 22 N -0.53 -27.90 7.89 -186.36 -1.47 -29.37 16 23 C 0.13 2.01 5.92 86.56 0.51 2.53 16 24 C -0.45 -6.41 5.87 72.14 0.42 -5.99 16 25 S 1.23 26.03 13.04 -56.49 -0.74 25.29 16 26 O -0.92 -31.04 18.14 -148.98 -2.70 -33.74 16 27 C -0.41 -6.83 4.98 69.78 0.35 -6.48 16 28 H 0.06 0.97 8.11 -2.38 -0.02 0.95 16 29 H 0.06 0.84 8.04 -2.39 -0.02 0.82 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 1.09 7.52 -2.39 -0.02 1.07 16 32 H 0.09 1.63 7.36 -2.39 -0.02 1.62 16 33 H 0.41 12.97 6.27 -92.71 -0.58 12.39 16 34 H 0.15 6.53 5.18 -8.69 -0.04 6.49 16 35 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 36 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 37 H 0.28 12.52 8.29 -92.71 -0.77 11.75 16 38 H 0.09 1.44 5.57 -2.38 -0.01 1.42 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.12 1.23 7.91 -2.47 -0.02 1.21 16 41 H 0.13 1.84 8.14 -2.47 -0.02 1.82 16 42 H 0.10 1.36 8.11 -2.39 -0.02 1.34 16 43 H 0.11 1.88 7.99 -2.39 -0.02 1.86 16 Total: -1.00 -74.60 356.41 0.32 -74.28 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.43 Total: 33.42 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 6.30 Total: -9.24 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.95 Total: -106.56 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -2.75 Total: -55.92 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Atomic # 16 Polarization: 26.03 SS G_CDS: -0.74 Total: 25.29 kcal Total: -74.60 0.32 -74.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.941 kcal (2) G-P(sol) polarization free energy of solvation -74.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds