Wall clock time and date at job start Tue Mar 31 2020 20:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 108.84775 * 2 1 4 4 C 1.53783 * 108.85675 * 241.42138 * 2 1 3 5 5 N 1.43338 * 113.48276 * 198.26358 * 4 2 1 6 6 C 1.34774 * 121.03519 * 282.17651 * 5 4 2 7 7 O 1.21579 * 119.99755 * 359.70968 * 6 5 4 8 8 N 1.34777 * 120.00028 * 179.71995 * 6 5 4 9 9 C 1.39243 * 119.99678 * 175.04236 * 8 6 5 10 10 C 1.39692 * 119.57209 * 185.28264 * 9 8 6 11 11 C 1.38646 * 119.49478 * 179.72542 * 10 9 8 12 12 C 1.38355 * 118.67173 * 0.53665 * 11 10 9 13 13 C 1.40577 * 119.12702 * 359.72675 * 12 11 10 14 14 C 1.41333 * 119.78426 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99721 * 359.97438 * 14 13 12 16 16 C 1.40020 * 120.00286 * 179.97438 * 14 13 12 17 17 N 1.30750 * 119.99740 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00374 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47422 * 89.99886 * 18 16 14 20 20 H 1.48503 * 109.47332 * 209.99808 * 18 16 14 21 21 H 1.48501 * 109.47006 * 329.99876 * 18 16 14 22 22 N 1.31901 * 119.57973 * 5.55067 * 9 8 6 23 23 C 1.49078 * 117.92554 * 101.89751 * 5 4 2 24 24 C 1.44465 * 111.36088 * 276.21787 * 23 5 4 25 25 S 1.82673 * 111.61588 * 60.16045 * 24 23 5 26 26 O 1.42100 * 109.47040 * 168.57004 * 25 24 23 27 27 C 1.54966 * 108.87450 * 118.55885 * 2 1 3 28 28 H 1.08995 * 109.47554 * 301.44386 * 1 2 3 29 29 H 1.08999 * 109.47150 * 61.44560 * 1 2 3 30 30 H 1.09003 * 109.47242 * 181.44286 * 1 2 3 31 31 H 1.09000 * 108.42763 * 77.33637 * 4 2 1 32 32 H 1.09001 * 108.74684 * 319.41731 * 4 2 1 33 33 H 0.97000 * 120.00002 * 354.75524 * 8 6 5 34 34 H 1.07996 * 120.24987 * 0.02562 * 10 9 8 35 35 H 1.07998 * 120.66316 * 180.28708 * 11 10 9 36 36 H 1.07993 * 120.43249 * 179.75160 * 12 11 10 37 37 H 0.96995 * 119.99932 * 179.97438 * 17 16 14 38 38 H 1.08993 * 109.10434 * 36.70599 * 23 5 4 39 39 H 1.09005 * 109.09755 * 155.74099 * 23 5 4 40 40 H 1.09003 * 109.04766 * 180.70704 * 24 23 5 41 41 H 1.09000 * 109.05130 * 299.67626 * 24 23 5 42 42 H 1.09004 * 108.79157 * 318.54807 * 27 2 1 43 43 H 1.09004 * 108.69972 * 200.27450 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8822 1.0316 0.0000 4 6 2.0271 -0.6962 -1.2780 5 7 3.3931 -1.1235 -1.2012 6 6 4.4051 -0.2459 -1.3500 7 8 4.1662 0.9278 -1.5581 8 7 5.6819 -0.6696 -1.2683 9 6 6.7266 0.2149 -1.5239 10 6 8.0407 -0.2583 -1.5458 11 6 9.0792 0.6227 -1.8062 12 6 8.7796 1.9553 -2.0268 13 6 7.4373 2.3707 -1.9860 14 6 7.1154 3.7286 -2.2100 15 1 7.8997 4.4433 -2.4113 16 6 5.7799 4.1473 -2.1709 17 7 4.8304 3.2819 -1.9276 18 14 5.3545 5.9418 -2.4676 19 1 5.1216 6.1621 -3.9176 20 1 4.1257 6.2910 -1.7103 21 1 6.4779 6.7989 -2.0108 22 7 6.4630 1.4896 -1.7371 23 6 3.6595 -2.5678 -0.9453 24 6 3.6090 -2.8701 0.4664 25 16 1.9711 -2.4867 1.1786 26 8 1.8818 -3.0385 2.4851 27 6 2.0313 -0.7010 1.2879 28 1 -0.3634 0.5361 0.8767 29 1 -0.3633 0.4912 -0.9027 30 1 -0.3634 -1.0274 0.0259 31 1 1.9239 -0.0012 -2.1113 32 1 1.3985 -1.5656 -1.4704 33 1 5.8732 -1.5895 -1.0273 34 1 8.2458 -1.3032 -1.3660 35 1 10.1018 0.2764 -1.8322 36 1 9.5667 2.6668 -2.2282 37 1 3.9052 3.5720 -1.9002 38 1 2.9113 -3.1661 -1.4652 39 1 4.6475 -2.8217 -1.3294 40 1 3.8208 -3.9296 0.6112 41 1 4.3673 -2.2821 0.9835 42 1 1.4131 -0.3794 2.1261 43 1 3.0608 -0.3951 1.4742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881143485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:14 Heat of formation + Delta-G solvation = 9.550010 kcal Electronic energy + Delta-G solvation = -28142.273956 eV Core-core repulsion = 24315.842640 eV Total energy + Delta-G solvation = -3826.431317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.04976 -38.15634 -36.47336 -35.66296 -34.87667 -34.00464 -32.94760 -31.12283 -30.29623 -29.08622 -27.57449 -26.22112 -25.30496 -23.44097 -21.94837 -21.36098 -20.59476 -18.94714 -18.12481 -17.46908 -17.05773 -16.61589 -15.88506 -15.49492 -15.28701 -14.99916 -14.63738 -14.45799 -14.15215 -13.82228 -13.75887 -13.62107 -13.45313 -12.94913 -12.83884 -12.61178 -12.20431 -12.06426 -11.90984 -11.86271 -11.68210 -11.34658 -11.15427 -11.12967 -10.95565 -10.71889 -10.65449 -10.46463 -10.01406 -9.92728 -9.70756 -9.13283 -9.03228 -8.42302 -8.25594 -7.96027 -7.23322 -6.96063 -6.12375 -4.39557 1.43478 2.40406 2.82440 3.02236 3.11890 3.16845 3.19235 3.26819 3.67752 4.06478 4.09226 4.22230 4.66896 4.76271 4.83726 4.91104 4.95136 5.08337 5.15691 5.27028 5.50510 5.56152 5.58011 5.66211 5.74866 5.91345 6.02941 6.05728 6.07284 6.17949 6.31389 6.45469 6.53987 6.77255 6.84319 6.94481 7.19469 7.33007 7.60312 7.68870 7.80780 8.14770 8.25415 8.57216 8.77699 9.05608 9.52458 10.25378 10.48792 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013268 B = 0.004288 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.883070 B = 6528.076149 C = 8122.770618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.074 4.074 3 H 0.088 0.912 4 C 0.131 3.869 5 N -0.640 5.640 6 C 0.669 3.331 7 O -0.451 6.451 8 N -0.673 5.673 9 C 0.385 3.615 10 C -0.359 4.359 11 C -0.035 4.035 12 C -0.306 4.306 13 C 0.271 3.729 14 C -0.425 4.425 15 H 0.082 0.918 16 C 0.057 3.943 17 N -0.649 5.649 18 Si 0.894 3.106 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.264 1.264 22 N -0.470 5.470 23 C 0.137 3.863 24 C -0.462 4.462 25 S 1.246 4.754 26 O -0.864 6.864 27 C -0.439 4.439 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.394 0.606 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.271 0.729 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.634 -11.837 -0.128 15.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.096 4.096 3 H 0.107 0.893 4 C 0.005 3.995 5 N -0.382 5.382 6 C 0.368 3.632 7 O -0.314 6.314 8 N -0.323 5.323 9 C 0.145 3.855 10 C -0.385 4.385 11 C -0.060 4.060 12 C -0.330 4.330 13 C 0.146 3.854 14 C -0.455 4.455 15 H 0.100 0.900 16 C -0.172 4.172 17 N -0.267 5.267 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.188 1.188 22 N -0.189 5.189 23 C 0.012 3.988 24 C -0.599 4.599 25 S 1.444 4.556 26 O -0.859 6.859 27 C -0.577 4.577 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.228 0.772 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.684 -11.217 0.015 16.932 hybrid contribution 2.747 0.694 1.592 3.250 sum -9.937 -10.523 1.607 14.562 Atomic orbital electron populations 1.21934 0.94502 1.01895 1.02553 1.21587 0.95270 1.01305 0.91418 0.89338 1.20858 0.81270 1.00015 0.97360 1.47376 1.05524 1.06894 1.78424 1.16348 0.80547 0.85570 0.80701 1.91396 1.80872 1.11710 1.47400 1.42719 1.04127 1.12977 1.72451 1.18363 0.83843 0.89832 0.93482 1.20427 0.92167 0.98721 1.27185 1.20539 0.96349 0.93426 0.95639 1.21623 0.97556 0.95408 1.18373 1.18381 0.86222 0.92775 0.87993 1.19574 0.92902 0.92551 1.40508 0.90034 1.26173 0.96961 0.98623 0.95464 1.70341 1.00258 1.32713 1.23405 0.86546 0.78756 0.83789 0.79036 1.19649 1.20380 1.18840 1.68685 1.33114 0.97687 1.19398 1.19738 1.03404 0.82872 0.92737 1.26695 1.19644 1.08193 1.05401 1.69885 0.98118 0.86099 1.01463 1.93082 1.80377 1.71069 1.41388 1.27705 1.07236 1.18534 1.04267 0.92527 0.91578 0.92361 0.89837 0.90160 0.77169 0.89305 0.88668 0.88612 0.91683 0.89330 0.90224 0.86421 0.89021 0.88157 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.91 37.16 0.33 -0.87 16 2 C -0.07 -0.83 3.09 -89.17 -0.28 -1.11 16 3 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 4 C 0.13 1.39 4.25 -5.31 -0.02 1.37 16 5 N -0.64 -8.28 2.27 -183.96 -0.42 -8.70 16 6 C 0.67 12.83 8.22 -86.92 -0.71 12.12 16 7 O -0.45 -10.80 11.94 5.30 0.06 -10.74 16 8 N -0.67 -13.03 5.25 -15.79 -0.08 -13.11 16 9 C 0.38 9.31 7.43 -155.00 -1.15 8.16 16 10 C -0.36 -8.05 9.96 -38.89 -0.39 -8.44 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.31 -7.73 9.83 -38.66 -0.38 -8.11 16 13 C 0.27 7.60 6.55 -85.00 -0.56 7.04 16 14 C -0.42 -11.66 9.14 -37.74 -0.34 -12.00 16 15 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 16 C 0.06 1.49 5.50 -17.34 -0.10 1.40 16 17 N -0.65 -17.64 8.99 55.55 0.50 -17.15 16 18 Si 0.89 19.14 29.56 -169.99 -5.02 14.11 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 22 N -0.47 -13.06 5.74 -10.26 -0.06 -13.12 16 23 C 0.14 1.19 5.22 -6.59 -0.03 1.16 16 24 C -0.46 -4.31 5.88 33.18 0.19 -4.12 16 25 S 1.25 12.35 12.61 -107.50 -1.36 10.99 16 26 O -0.86 -14.04 18.13 -35.23 -0.64 -14.68 16 27 C -0.44 -5.24 5.19 38.20 0.20 -5.04 16 28 H 0.06 0.47 8.12 -51.93 -0.42 0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.08 1.05 7.80 -51.93 -0.41 0.65 16 32 H 0.08 0.47 7.26 -51.93 -0.38 0.10 16 33 H 0.39 6.01 6.49 -40.82 -0.26 5.75 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 37 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 38 H 0.09 0.43 7.80 -51.93 -0.41 0.03 16 39 H 0.08 0.69 6.30 -51.93 -0.33 0.36 16 40 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.09 8.01 -51.93 -0.42 0.67 16 42 H 0.10 1.20 7.97 -51.46 -0.41 0.79 16 43 H 0.09 1.37 7.91 -51.46 -0.41 0.96 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -37.97 355.58 -11.23 -49.20 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.94 Total: 7.47 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -3.64 Total: -9.64 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.06 Total: -52.08 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.58 Total: -25.42 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 16 Polarization: 12.35 SS G_CDS: -1.36 Total: 10.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.97 -11.23 -49.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.751 kcal (2) G-P(sol) polarization free energy of solvation -37.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds