Wall clock time and date at job start Tue Mar 31 2020 20:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 108.84775 * 2 1 4 4 C 1.53783 * 108.85675 * 241.42138 * 2 1 3 5 5 N 1.43338 * 113.48276 * 198.26358 * 4 2 1 6 6 C 1.34774 * 121.03519 * 282.17651 * 5 4 2 7 7 O 1.21579 * 119.99755 * 359.70968 * 6 5 4 8 8 N 1.34777 * 120.00028 * 179.71995 * 6 5 4 9 9 C 1.39243 * 119.99678 * 175.04236 * 8 6 5 10 10 C 1.39692 * 119.57209 * 185.28264 * 9 8 6 11 11 C 1.38646 * 119.49478 * 179.72542 * 10 9 8 12 12 C 1.38355 * 118.67173 * 0.53665 * 11 10 9 13 13 C 1.40577 * 119.12702 * 359.72675 * 12 11 10 14 14 C 1.41333 * 119.78426 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99721 * 359.97438 * 14 13 12 16 16 C 1.40020 * 120.00286 * 179.97438 * 14 13 12 17 17 N 1.30750 * 119.99740 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00374 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47422 * 89.99886 * 18 16 14 20 20 H 1.48503 * 109.47332 * 209.99808 * 18 16 14 21 21 H 1.48501 * 109.47006 * 329.99876 * 18 16 14 22 22 N 1.31901 * 119.57973 * 5.55067 * 9 8 6 23 23 C 1.49078 * 117.92554 * 101.89751 * 5 4 2 24 24 C 1.44465 * 111.36088 * 276.21787 * 23 5 4 25 25 S 1.82673 * 111.61588 * 60.16045 * 24 23 5 26 26 O 1.42100 * 109.47040 * 168.57004 * 25 24 23 27 27 C 1.54966 * 108.87450 * 118.55885 * 2 1 3 28 28 H 1.08995 * 109.47554 * 301.44386 * 1 2 3 29 29 H 1.08999 * 109.47150 * 61.44560 * 1 2 3 30 30 H 1.09003 * 109.47242 * 181.44286 * 1 2 3 31 31 H 1.09000 * 108.42763 * 77.33637 * 4 2 1 32 32 H 1.09001 * 108.74684 * 319.41731 * 4 2 1 33 33 H 0.97000 * 120.00002 * 354.75524 * 8 6 5 34 34 H 1.07996 * 120.24987 * 0.02562 * 10 9 8 35 35 H 1.07998 * 120.66316 * 180.28708 * 11 10 9 36 36 H 1.07993 * 120.43249 * 179.75160 * 12 11 10 37 37 H 0.96995 * 119.99932 * 179.97438 * 17 16 14 38 38 H 1.08993 * 109.10434 * 36.70599 * 23 5 4 39 39 H 1.09005 * 109.09755 * 155.74099 * 23 5 4 40 40 H 1.09003 * 109.04766 * 180.70704 * 24 23 5 41 41 H 1.09000 * 109.05130 * 299.67626 * 24 23 5 42 42 H 1.09004 * 108.79157 * 318.54807 * 27 2 1 43 43 H 1.09004 * 108.69972 * 200.27450 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8822 1.0316 0.0000 4 6 2.0271 -0.6962 -1.2780 5 7 3.3931 -1.1235 -1.2012 6 6 4.4051 -0.2459 -1.3500 7 8 4.1662 0.9278 -1.5581 8 7 5.6819 -0.6696 -1.2683 9 6 6.7266 0.2149 -1.5239 10 6 8.0407 -0.2583 -1.5458 11 6 9.0792 0.6227 -1.8062 12 6 8.7796 1.9553 -2.0268 13 6 7.4373 2.3707 -1.9860 14 6 7.1154 3.7286 -2.2100 15 1 7.8997 4.4433 -2.4113 16 6 5.7799 4.1473 -2.1709 17 7 4.8304 3.2819 -1.9276 18 14 5.3545 5.9418 -2.4676 19 1 5.1216 6.1621 -3.9176 20 1 4.1257 6.2910 -1.7103 21 1 6.4779 6.7989 -2.0108 22 7 6.4630 1.4896 -1.7371 23 6 3.6595 -2.5678 -0.9453 24 6 3.6090 -2.8701 0.4664 25 16 1.9711 -2.4867 1.1786 26 8 1.8818 -3.0385 2.4851 27 6 2.0313 -0.7010 1.2879 28 1 -0.3634 0.5361 0.8767 29 1 -0.3633 0.4912 -0.9027 30 1 -0.3634 -1.0274 0.0259 31 1 1.9239 -0.0012 -2.1113 32 1 1.3985 -1.5656 -1.4704 33 1 5.8732 -1.5895 -1.0273 34 1 8.2458 -1.3032 -1.3660 35 1 10.1018 0.2764 -1.8322 36 1 9.5667 2.6668 -2.2282 37 1 3.9052 3.5720 -1.9002 38 1 2.9113 -3.1661 -1.4652 39 1 4.6475 -2.8217 -1.3294 40 1 3.8208 -3.9296 0.6112 41 1 4.3673 -2.2821 0.9835 42 1 1.4131 -0.3794 2.1261 43 1 3.0608 -0.3951 1.4742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881143485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:13 Heat of formation + Delta-G solvation = -17.311843 kcal Electronic energy + Delta-G solvation = -28143.438774 eV Core-core repulsion = 24315.842640 eV Total energy + Delta-G solvation = -3827.596134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41818 -39.82208 -37.78384 -36.80837 -36.08866 -35.54835 -34.66891 -32.25379 -32.07088 -30.87883 -28.47244 -27.68195 -26.77504 -24.48328 -23.50847 -23.06078 -21.78055 -20.41932 -19.63066 -18.66821 -18.31368 -18.00742 -17.11012 -16.67399 -16.38129 -16.28389 -16.24320 -16.09692 -15.55574 -15.35456 -14.94228 -14.78489 -14.62594 -14.55478 -13.99676 -13.83747 -13.73857 -13.40692 -12.98121 -12.89517 -12.74332 -12.69196 -12.58738 -12.51845 -12.32326 -12.22245 -12.02020 -11.77205 -11.63983 -11.45989 -11.03086 -10.85567 -10.70632 -9.88921 -9.52627 -9.28086 -9.09571 -8.76575 -8.02237 -6.41014 0.56865 0.96578 1.27906 1.38760 1.50245 1.50742 1.52925 1.81989 2.26351 2.58329 2.75507 3.01299 3.04210 3.75425 3.81418 3.97223 4.03614 4.08839 4.28363 4.34664 4.39781 4.45600 4.67177 4.70811 4.74071 4.80687 4.88153 4.92710 4.95942 4.98368 5.05903 5.09928 5.26140 5.31477 5.35773 5.48374 5.65374 5.82370 5.88772 5.94505 6.10550 6.25745 6.40612 6.82274 7.06141 7.16331 8.04910 8.38584 8.58534 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013268 B = 0.004288 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.883070 B = 6528.076149 C = 8122.770618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 H 0.034 0.966 4 C 0.121 3.879 5 N -0.630 5.630 6 C 0.659 3.341 7 O -0.507 6.507 8 N -0.664 5.664 9 C 0.363 3.637 10 C -0.350 4.350 11 C -0.033 4.033 12 C -0.333 4.333 13 C 0.238 3.762 14 C -0.467 4.467 15 H 0.083 0.917 16 C 0.011 3.989 17 N -0.680 5.680 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.259 1.259 22 N -0.503 5.503 23 C 0.127 3.873 24 C -0.459 4.459 25 S 1.326 4.674 26 O -0.922 6.922 27 C -0.443 4.443 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.146 0.854 33 H 0.413 0.587 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.269 0.731 38 H 0.149 0.851 39 H 0.088 0.912 40 H 0.150 0.850 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 -14.925 -0.856 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 H 0.053 0.947 4 C -0.003 4.003 5 N -0.370 5.370 6 C 0.358 3.642 7 O -0.373 6.373 8 N -0.316 5.316 9 C 0.123 3.877 10 C -0.375 4.375 11 C -0.058 4.058 12 C -0.356 4.356 13 C 0.112 3.888 14 C -0.498 4.498 15 H 0.101 0.899 16 C -0.215 4.215 17 N -0.299 5.299 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.183 1.183 22 N -0.222 5.222 23 C 0.005 3.995 24 C -0.597 4.597 25 S 1.525 4.475 26 O -0.918 6.918 27 C -0.580 4.580 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.251 0.749 34 H 0.147 0.853 35 H 0.153 0.847 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.167 0.833 39 H 0.106 0.894 40 H 0.168 0.832 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.680 -14.384 -0.686 19.862 hybrid contribution 3.144 1.443 1.857 3.926 sum -10.535 -12.941 1.170 16.728 Atomic orbital electron populations 1.21955 0.91465 1.04478 1.02756 1.21475 0.97723 0.98319 0.91421 0.94702 1.21195 0.80850 1.02270 0.96000 1.47327 1.04844 1.08114 1.76755 1.16709 0.81323 0.85850 0.80277 1.91378 1.81799 1.14526 1.49645 1.42604 1.03645 1.13231 1.72120 1.18890 0.85986 0.89696 0.93100 1.20900 0.91296 1.00604 1.24706 1.21002 0.98516 0.92373 0.93861 1.21795 0.96802 0.97117 1.19870 1.18870 0.87681 0.93556 0.88686 1.19880 0.93920 0.93091 1.42863 0.89857 1.26997 0.96380 1.03241 0.94879 1.70545 1.00211 1.34675 1.24444 0.85377 0.78405 0.77877 0.79067 1.18848 1.19957 1.18262 1.68673 1.33869 0.99287 1.20406 1.20223 1.06140 0.80344 0.92834 1.26701 1.17895 1.09761 1.05368 1.69038 0.97567 0.82478 0.98412 1.92967 1.82318 1.72041 1.44495 1.27821 1.04650 1.20916 1.04642 0.93151 0.90767 0.88456 0.92082 0.83624 0.74887 0.85346 0.84662 0.87946 0.91997 0.83339 0.89403 0.83196 0.91813 0.88698 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.91 71.98 0.64 -1.49 16 2 C -0.07 -1.54 3.09 -9.86 -0.03 -1.57 16 3 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.12 2.40 4.25 87.23 0.37 2.77 16 5 N -0.63 -15.40 2.27 -854.21 -1.94 -17.34 16 6 C 0.66 25.80 8.22 179.06 1.47 27.27 16 7 O -0.51 -25.76 11.94 -3.96 -0.05 -25.81 16 8 N -0.66 -25.59 5.25 -322.12 -1.69 -27.28 16 9 C 0.36 17.79 7.43 133.26 0.99 18.78 16 10 C -0.35 -15.13 9.96 22.72 0.23 -14.90 16 11 C -0.03 -1.48 10.15 22.40 0.23 -1.25 16 12 C -0.33 -17.14 9.83 22.87 0.22 -16.92 16 13 C 0.24 13.94 6.55 40.19 0.26 14.20 16 14 C -0.47 -27.02 9.14 23.46 0.21 -26.81 16 15 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 16 C 0.01 0.61 5.50 85.29 0.47 1.08 16 17 N -0.68 -39.35 8.99 21.84 0.20 -39.16 16 18 Si 0.97 41.23 29.56 68.60 2.03 43.26 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 N -0.50 -29.19 5.74 -186.36 -1.07 -30.26 16 23 C 0.13 1.68 5.22 83.30 0.43 2.11 16 24 C -0.46 -7.02 5.88 69.41 0.41 -6.61 16 25 S 1.33 22.82 12.61 -56.49 -0.71 22.11 16 26 O -0.92 -28.41 18.13 -148.98 -2.70 -31.11 16 27 C -0.44 -10.75 5.19 72.65 0.38 -10.37 16 28 H 0.05 0.79 8.12 -2.39 -0.02 0.78 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 0.64 8.07 -2.39 -0.02 0.62 16 31 H 0.06 1.54 7.80 -2.39 -0.02 1.53 16 32 H 0.15 0.96 7.26 -2.39 -0.02 0.94 16 33 H 0.41 11.86 6.49 -92.71 -0.60 11.26 16 34 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 35 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 37 H 0.27 14.70 8.29 -92.71 -0.77 13.93 16 38 H 0.15 0.36 7.80 -2.39 -0.02 0.35 16 39 H 0.09 1.13 6.30 -2.38 -0.02 1.11 16 40 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.42 8.01 -2.39 -0.02 1.40 16 42 H 0.09 2.36 7.97 -2.68 -0.02 2.34 16 43 H 0.05 1.67 7.91 -2.68 -0.02 1.65 16 Total: -1.00 -92.51 355.58 0.78 -91.72 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.43 Total: 27.57 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 6.29 Total: -13.70 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -4.50 Total: -114.04 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -2.75 Total: -56.92 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 22.82 SS G_CDS: -0.71 Total: 22.11 kcal Total: -92.51 0.78 -91.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.413 kcal (2) G-P(sol) polarization free energy of solvation -92.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds