Wall clock time and date at job start Tue Mar 31 2020 20:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.32391 * 2 1 4 4 C 1.49599 * 109.32902 * 119.47812 * 2 1 3 5 5 C 1.55456 * 113.59542 * 209.38196 * 4 2 1 6 6 N 1.47203 * 115.75464 * 316.28476 * 5 4 2 7 7 C 1.34774 * 119.02800 * 136.93953 * 6 5 4 8 8 O 1.21578 * 119.99754 * 359.72585 * 7 6 5 9 9 N 1.34773 * 120.00389 * 180.02562 * 7 6 5 10 10 C 1.39248 * 120.00074 * 174.60768 * 9 7 6 11 11 C 1.39687 * 119.57244 * 185.40306 * 10 9 7 12 12 C 1.38650 * 119.49366 * 179.97438 * 11 10 9 13 13 C 1.38355 * 118.67129 * 359.97438 * 12 11 10 14 14 C 1.40573 * 119.12992 * 0.02562 * 13 12 11 15 15 C 1.41331 * 119.78826 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99984 * 0.02562 * 15 14 13 17 17 C 1.40022 * 120.00535 * 179.97438 * 15 14 13 18 18 N 1.30751 * 119.99715 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00482 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47236 * 60.00006 * 19 17 15 21 21 H 1.48501 * 109.47037 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46675 * 300.00040 * 19 17 15 23 23 N 1.31897 * 119.57758 * 5.13261 * 10 9 7 24 24 C 1.42846 * 121.94920 * 316.66353 * 6 5 4 25 25 C 1.53957 * 108.12184 * 95.99808 * 24 6 5 26 26 S 1.74749 * 112.57366 * 279.22205 * 25 24 6 27 27 O 1.42096 * 109.47352 * 178.21905 * 26 25 24 28 28 H 1.08998 * 109.47153 * 179.64041 * 1 2 3 29 29 H 1.09001 * 109.47038 * 299.64110 * 1 2 3 30 30 H 1.09000 * 109.47011 * 59.64486 * 1 2 3 31 31 H 1.09006 * 108.68536 * 330.47168 * 4 2 1 32 32 H 1.09000 * 108.69185 * 88.55357 * 4 2 1 33 33 H 1.09004 * 108.38261 * 194.59170 * 5 4 2 34 34 H 1.08999 * 108.19954 * 77.84603 * 5 4 2 35 35 H 0.96998 * 119.99941 * 354.61517 * 9 7 6 36 36 H 1.07995 * 120.25498 * 359.97438 * 11 10 9 37 37 H 1.08003 * 120.66302 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.43234 * 179.97438 * 13 12 11 39 39 H 0.97001 * 120.00156 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.73784 * 215.66057 * 24 6 5 41 41 H 1.09003 * 109.73133 * 336.34437 * 24 6 5 42 42 H 1.09003 * 108.85826 * 40.01569 * 25 24 6 43 43 H 1.08996 * 108.86911 * 158.52270 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8907 1.0285 0.0000 4 6 2.0252 -0.6947 1.2289 5 6 3.4025 -0.1730 1.7263 6 7 4.4181 0.0459 0.6835 7 6 5.1748 1.1602 0.7312 8 8 5.0099 1.9691 1.6237 9 7 6.1101 1.3806 -0.2137 10 6 6.8140 2.5820 -0.2298 11 6 7.6991 2.8485 -1.2771 12 6 8.3987 4.0455 -1.2917 13 6 8.1960 4.9455 -0.2607 14 6 7.2916 4.6189 0.7648 15 6 7.0743 5.5278 1.8251 16 1 7.6021 6.4699 1.8455 17 6 6.1741 5.2074 2.8486 18 7 5.5348 4.0671 2.8237 19 14 5.8864 6.4090 4.2496 20 1 5.3691 7.6899 3.7049 21 1 4.8958 5.8371 5.1966 22 1 7.1663 6.6548 4.9615 23 7 6.6324 3.4560 0.7412 24 6 4.6294 -0.8905 -0.3743 25 6 3.8251 -0.4185 -1.5994 26 16 2.1357 -0.8541 -1.5010 27 8 1.4502 -0.3529 -2.6404 28 1 -0.3633 -1.0276 -0.0064 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5193 -0.8868 31 1 1.2929 -0.5601 2.0251 32 1 2.1162 -1.7597 1.0155 33 1 3.8019 -0.8884 2.4452 34 1 3.2411 0.7707 2.2475 35 1 6.2929 0.7024 -0.8827 36 1 7.8374 2.1277 -2.0693 37 1 9.0874 4.2711 -2.0925 38 1 8.7263 5.8862 -0.2435 39 1 4.9115 3.8450 3.5329 40 1 5.6897 -0.9312 -0.6236 41 1 4.2850 -1.8777 -0.0661 42 1 3.9055 0.6657 -1.6772 43 1 4.2519 -0.8683 -2.4958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881146409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:40 Heat of formation + Delta-G solvation = 8.122045 kcal Electronic energy + Delta-G solvation = -27997.322114 eV Core-core repulsion = 24170.828877 eV Total energy + Delta-G solvation = -3826.493238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11526 -38.09460 -36.37644 -35.70586 -34.79574 -34.12541 -33.01013 -30.85312 -30.31521 -29.47847 -28.37332 -25.56214 -24.20812 -23.92150 -22.29187 -21.41198 -20.71994 -18.89779 -18.33816 -17.53704 -16.99519 -16.62501 -16.03260 -15.67565 -15.25757 -15.01100 -14.63597 -14.43944 -14.07470 -13.73539 -13.65032 -13.60918 -13.30657 -13.10854 -12.79943 -12.65018 -12.27156 -12.15297 -12.01174 -11.92339 -11.77199 -11.42678 -11.16596 -11.08515 -10.97702 -10.86478 -10.67078 -10.46354 -9.95752 -9.93861 -9.71908 -9.15104 -9.03688 -8.32944 -8.25563 -7.96597 -7.23977 -6.97191 -6.12685 -4.40148 1.46449 2.53775 2.82593 3.02774 3.11175 3.15586 3.17843 3.26956 3.67870 4.06068 4.06402 4.32513 4.51267 4.68089 4.84810 4.90694 4.93552 4.99075 5.12701 5.22426 5.36817 5.46150 5.55132 5.64379 5.77710 5.89525 5.95977 6.02035 6.05695 6.07084 6.14054 6.45297 6.55475 6.76653 6.83804 6.94155 7.17855 7.28410 7.59624 7.68410 7.80298 8.14065 8.25135 8.56388 8.77163 9.04852 9.48115 10.24785 10.48486 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.004067 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.065547 B = 6883.283909 C = 8182.708612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.402 4.402 3 H 0.094 0.906 4 C -0.094 4.094 5 C 0.121 3.879 6 N -0.636 5.636 7 C 0.663 3.337 8 O -0.455 6.455 9 N -0.672 5.672 10 C 0.384 3.616 11 C -0.358 4.358 12 C -0.035 4.035 13 C -0.306 4.306 14 C 0.271 3.729 15 C -0.425 4.425 16 H 0.082 0.918 17 C 0.057 3.943 18 N -0.650 5.650 19 Si 0.896 3.104 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.267 1.267 23 N -0.471 5.471 24 C 0.150 3.850 25 C -0.519 4.519 26 S 1.271 4.729 27 O -0.859 6.859 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.395 0.605 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.272 0.728 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -16.890 -1.954 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.519 4.519 3 H 0.113 0.887 4 C -0.134 4.134 5 C -0.002 4.002 6 N -0.377 5.377 7 C 0.362 3.638 8 O -0.318 6.318 9 N -0.322 5.322 10 C 0.144 3.856 11 C -0.385 4.385 12 C -0.059 4.059 13 C -0.329 4.329 14 C 0.146 3.854 15 C -0.455 4.455 16 H 0.100 0.900 17 C -0.173 4.173 18 N -0.269 5.269 19 Si 0.720 3.280 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.192 1.192 23 N -0.189 5.189 24 C 0.023 3.977 25 C -0.658 4.658 26 S 1.469 4.531 27 O -0.855 6.855 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.230 0.770 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.516 -17.100 -1.025 19.130 hybrid contribution 1.035 2.693 -0.952 3.038 sum -7.481 -14.407 -1.977 16.353 Atomic orbital electron populations 1.21509 0.91910 1.02326 1.02872 1.26828 1.02608 1.10223 1.12279 0.88719 1.21277 0.96445 0.99477 0.96172 1.21758 0.86250 1.03438 0.88780 1.46694 1.39061 1.22357 1.29638 1.16445 0.80784 0.82356 0.84195 1.91382 1.66596 1.41576 1.32226 1.42745 1.39252 1.17991 1.32173 1.18366 0.89343 0.86235 0.91657 1.20426 1.12201 1.02155 1.03674 1.20543 0.96041 0.93078 0.96276 1.21624 1.09364 1.01518 1.00416 1.18379 0.87119 0.88914 0.90973 1.19546 1.20026 1.02302 1.03668 0.90025 1.26185 0.96061 0.95833 0.99181 1.70336 1.12990 1.16782 1.26766 0.86591 0.78871 0.81406 0.81141 1.19241 1.20415 1.19158 1.68681 1.26113 1.02550 1.21599 1.20351 0.99104 0.93599 0.84642 1.28075 1.21416 1.10002 1.06327 1.69363 0.82547 1.15787 0.85440 1.93082 1.67451 1.81026 1.43930 0.91837 0.91602 0.92333 0.89661 0.91042 0.91891 0.88923 0.76969 0.89273 0.88617 0.88568 0.91635 0.90341 0.88827 0.88300 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 8.87 37.16 0.33 -0.91 16 2 C -0.40 -4.22 2.75 -28.41 -0.08 -4.30 16 3 H 0.09 1.37 7.95 -51.93 -0.41 0.95 16 4 C -0.09 -0.75 5.02 -27.11 -0.14 -0.88 16 5 C 0.12 1.40 6.01 -2.35 -0.01 1.39 16 6 N -0.64 -8.66 2.46 -179.52 -0.44 -9.10 16 7 C 0.66 13.24 7.83 -86.92 -0.68 12.56 16 8 O -0.45 -11.35 11.37 5.30 0.06 -11.29 16 9 N -0.67 -13.38 5.19 -15.79 -0.08 -13.46 16 10 C 0.38 9.51 7.43 -155.00 -1.15 8.36 16 11 C -0.36 -8.22 9.96 -38.89 -0.39 -8.61 16 12 C -0.04 -0.82 10.15 -39.39 -0.40 -1.21 16 13 C -0.31 -7.84 9.83 -38.66 -0.38 -8.22 16 14 C 0.27 7.73 6.55 -85.00 -0.56 7.17 16 15 C -0.42 -11.84 9.14 -37.74 -0.34 -12.19 16 16 H 0.08 2.13 7.85 -52.48 -0.41 1.71 16 17 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 18 N -0.65 -18.10 8.98 55.55 0.50 -17.60 16 19 Si 0.90 19.44 29.56 -169.99 -5.02 14.42 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 N -0.47 -13.37 5.73 -10.26 -0.06 -13.43 16 24 C 0.15 1.38 5.10 -5.47 -0.03 1.35 16 25 C -0.52 -5.36 5.75 37.66 0.22 -5.14 16 26 S 1.27 12.33 12.38 -107.50 -1.33 11.00 16 27 O -0.86 -14.12 17.82 -35.23 -0.63 -14.75 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.60 8.04 -51.93 -0.42 0.19 16 30 H 0.06 0.69 8.00 -51.93 -0.42 0.28 16 31 H 0.08 0.61 7.66 -51.93 -0.40 0.21 16 32 H 0.07 0.30 7.78 -51.93 -0.40 -0.10 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.42 6.88 -51.93 -0.36 1.06 16 35 H 0.40 6.21 6.34 -40.82 -0.26 5.95 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 38 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 39 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 40 H 0.08 0.69 6.45 -51.93 -0.33 0.35 16 41 H 0.09 0.45 7.92 -51.93 -0.41 0.04 16 42 H 0.10 1.44 7.75 -49.20 -0.38 1.06 16 43 H 0.12 1.02 8.14 -49.11 -0.40 0.62 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -39.07 354.21 -11.23 -50.30 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.85 Total: 7.80 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -3.71 Total: -9.23 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.08 Total: -53.59 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.57 Total: -26.04 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 16 Polarization: 12.33 SS G_CDS: -1.33 Total: 11.00 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -39.07 -11.23 -50.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.424 kcal (2) G-P(sol) polarization free energy of solvation -39.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds