Wall clock time and date at job start Tue Mar 31 2020 20:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.32391 * 2 1 4 4 C 1.49599 * 109.32902 * 119.47812 * 2 1 3 5 5 C 1.55456 * 113.59542 * 209.38196 * 4 2 1 6 6 N 1.47203 * 115.75464 * 316.28476 * 5 4 2 7 7 C 1.34774 * 119.02800 * 136.93953 * 6 5 4 8 8 O 1.21578 * 119.99754 * 359.72585 * 7 6 5 9 9 N 1.34773 * 120.00389 * 180.02562 * 7 6 5 10 10 C 1.39248 * 120.00074 * 174.60768 * 9 7 6 11 11 C 1.39687 * 119.57244 * 185.40306 * 10 9 7 12 12 C 1.38650 * 119.49366 * 179.97438 * 11 10 9 13 13 C 1.38355 * 118.67129 * 359.97438 * 12 11 10 14 14 C 1.40573 * 119.12992 * 0.02562 * 13 12 11 15 15 C 1.41331 * 119.78826 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99984 * 0.02562 * 15 14 13 17 17 C 1.40022 * 120.00535 * 179.97438 * 15 14 13 18 18 N 1.30751 * 119.99715 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00482 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47236 * 60.00006 * 19 17 15 21 21 H 1.48501 * 109.47037 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46675 * 300.00040 * 19 17 15 23 23 N 1.31897 * 119.57758 * 5.13261 * 10 9 7 24 24 C 1.42846 * 121.94920 * 316.66353 * 6 5 4 25 25 C 1.53957 * 108.12184 * 95.99808 * 24 6 5 26 26 S 1.74749 * 112.57366 * 279.22205 * 25 24 6 27 27 O 1.42096 * 109.47352 * 178.21905 * 26 25 24 28 28 H 1.08998 * 109.47153 * 179.64041 * 1 2 3 29 29 H 1.09001 * 109.47038 * 299.64110 * 1 2 3 30 30 H 1.09000 * 109.47011 * 59.64486 * 1 2 3 31 31 H 1.09006 * 108.68536 * 330.47168 * 4 2 1 32 32 H 1.09000 * 108.69185 * 88.55357 * 4 2 1 33 33 H 1.09004 * 108.38261 * 194.59170 * 5 4 2 34 34 H 1.08999 * 108.19954 * 77.84603 * 5 4 2 35 35 H 0.96998 * 119.99941 * 354.61517 * 9 7 6 36 36 H 1.07995 * 120.25498 * 359.97438 * 11 10 9 37 37 H 1.08003 * 120.66302 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.43234 * 179.97438 * 13 12 11 39 39 H 0.97001 * 120.00156 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.73784 * 215.66057 * 24 6 5 41 41 H 1.09003 * 109.73133 * 336.34437 * 24 6 5 42 42 H 1.09003 * 108.85826 * 40.01569 * 25 24 6 43 43 H 1.08996 * 108.86911 * 158.52270 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8907 1.0285 0.0000 4 6 2.0252 -0.6947 1.2289 5 6 3.4025 -0.1730 1.7263 6 7 4.4181 0.0459 0.6835 7 6 5.1748 1.1602 0.7312 8 8 5.0099 1.9691 1.6237 9 7 6.1101 1.3806 -0.2137 10 6 6.8140 2.5820 -0.2298 11 6 7.6991 2.8485 -1.2771 12 6 8.3987 4.0455 -1.2917 13 6 8.1960 4.9455 -0.2607 14 6 7.2916 4.6189 0.7648 15 6 7.0743 5.5278 1.8251 16 1 7.6021 6.4699 1.8455 17 6 6.1741 5.2074 2.8486 18 7 5.5348 4.0671 2.8237 19 14 5.8864 6.4090 4.2496 20 1 5.3691 7.6899 3.7049 21 1 4.8958 5.8371 5.1966 22 1 7.1663 6.6548 4.9615 23 7 6.6324 3.4560 0.7412 24 6 4.6294 -0.8905 -0.3743 25 6 3.8251 -0.4185 -1.5994 26 16 2.1357 -0.8541 -1.5010 27 8 1.4502 -0.3529 -2.6404 28 1 -0.3633 -1.0276 -0.0064 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5193 -0.8868 31 1 1.2929 -0.5601 2.0251 32 1 2.1162 -1.7597 1.0155 33 1 3.8019 -0.8884 2.4452 34 1 3.2411 0.7707 2.2475 35 1 6.2929 0.7024 -0.8827 36 1 7.8374 2.1277 -2.0693 37 1 9.0874 4.2711 -2.0925 38 1 8.7263 5.8862 -0.2435 39 1 4.9115 3.8450 3.5329 40 1 5.6897 -0.9312 -0.6236 41 1 4.2850 -1.8777 -0.0661 42 1 3.9055 0.6657 -1.6772 43 1 4.2519 -0.8683 -2.4958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881146409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:39 Heat of formation + Delta-G solvation = -20.247369 kcal Electronic energy + Delta-G solvation = -27998.552304 eV Core-core repulsion = 24170.828877 eV Total energy + Delta-G solvation = -3827.723428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54573 -39.82916 -37.64086 -36.83158 -36.11094 -35.62357 -34.79191 -32.25680 -31.83077 -31.10180 -29.59234 -27.48417 -25.09473 -25.07415 -23.71677 -23.21185 -22.04119 -20.34743 -19.80989 -18.82685 -18.30002 -18.08152 -17.05355 -16.91925 -16.52987 -16.36432 -16.22820 -16.03858 -15.59871 -15.27674 -14.96591 -14.71824 -14.61870 -14.34182 -14.03685 -13.87597 -13.73477 -13.50302 -13.17242 -13.02385 -12.88801 -12.77688 -12.66989 -12.60972 -12.36529 -12.28022 -11.98946 -11.81947 -11.72514 -11.52168 -10.91103 -10.85380 -10.79076 -9.93714 -9.50694 -9.22783 -9.14808 -8.82081 -8.06146 -6.45452 0.63432 0.92189 1.23601 1.35942 1.47678 1.50408 1.69310 1.73455 2.23612 2.48219 2.80906 2.99704 3.06446 3.61081 3.81444 4.01563 4.03664 4.06719 4.23819 4.29178 4.35731 4.40586 4.59165 4.64945 4.72347 4.74984 4.77915 4.84806 4.91574 4.94628 5.01617 5.14461 5.17740 5.23785 5.24783 5.32822 5.61178 5.78668 5.85225 5.90771 5.97274 6.22465 6.36287 6.77731 7.02037 7.12594 7.95145 8.33356 8.54585 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.004067 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.065547 B = 6883.283909 C = 8182.708612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.405 4.405 3 H 0.042 0.958 4 C -0.087 4.087 5 C 0.117 3.883 6 N -0.623 5.623 7 C 0.652 3.348 8 O -0.512 6.512 9 N -0.662 5.662 10 C 0.362 3.638 11 C -0.350 4.350 12 C -0.033 4.033 13 C -0.332 4.332 14 C 0.236 3.764 15 C -0.467 4.467 16 H 0.085 0.915 17 C 0.009 3.991 18 N -0.684 5.684 19 Si 0.974 3.026 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.258 1.258 23 N -0.505 5.505 24 C 0.140 3.860 25 C -0.519 4.519 26 S 1.349 4.651 27 O -0.928 6.928 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.414 0.586 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.269 0.731 40 H 0.089 0.911 41 H 0.157 0.843 42 H 0.052 0.948 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 -20.211 -2.278 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.522 4.522 3 H 0.061 0.939 4 C -0.126 4.126 5 C -0.005 4.005 6 N -0.363 5.363 7 C 0.351 3.649 8 O -0.380 6.380 9 N -0.314 5.314 10 C 0.122 3.878 11 C -0.376 4.376 12 C -0.057 4.057 13 C -0.355 4.355 14 C 0.111 3.889 15 C -0.498 4.498 16 H 0.103 0.897 17 C -0.217 4.217 18 N -0.302 5.302 19 Si 0.795 3.205 20 H -0.188 1.188 21 H -0.197 1.197 22 H -0.182 1.182 23 N -0.224 5.224 24 C 0.014 3.986 25 C -0.658 4.658 26 S 1.548 4.452 27 O -0.924 6.924 28 H 0.121 0.879 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.118 0.882 32 H 0.148 0.852 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.253 0.747 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.175 0.825 42 H 0.071 0.929 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.592 -20.501 -1.409 22.273 hybrid contribution 1.094 3.611 -0.997 3.902 sum -7.498 -16.890 -2.407 18.636 Atomic orbital electron populations 1.21572 0.91204 1.04478 1.01612 1.26954 1.03455 1.07670 1.14150 0.93865 1.21345 0.94057 1.02060 0.95125 1.21994 0.87835 1.01906 0.88794 1.46631 1.37936 1.20953 1.30775 1.16835 0.81073 0.83500 0.83454 1.91362 1.68155 1.44116 1.34356 1.42611 1.38896 1.17091 1.32800 1.18900 0.90074 0.87219 0.91646 1.20901 1.10425 1.02677 1.03592 1.21014 0.96019 0.92377 0.96315 1.21807 1.09794 1.02804 1.01060 1.18893 0.88182 0.89632 0.92219 1.19883 1.21803 1.02961 1.05103 0.89658 1.27056 0.95326 0.97725 1.01568 1.70554 1.13547 1.18664 1.27469 0.85396 0.79004 0.78626 0.77457 1.18799 1.19718 1.18196 1.68669 1.27011 1.03228 1.23491 1.20885 1.00003 0.95026 0.82642 1.28136 1.22181 1.07046 1.08444 1.68332 0.80671 1.13485 0.82698 1.92959 1.69672 1.82307 1.47417 0.87909 0.91322 0.95278 0.88179 0.85165 0.89047 0.93831 0.74665 0.85371 0.84522 0.87752 0.91985 0.89272 0.82529 0.92938 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.87 71.98 0.64 -1.75 16 2 C -0.40 -8.08 2.75 29.50 0.08 -8.00 16 3 H 0.04 1.32 7.95 -2.39 -0.02 1.30 16 4 C -0.09 -1.10 5.02 30.35 0.15 -0.95 16 5 C 0.12 2.57 6.01 87.09 0.52 3.09 16 6 N -0.62 -16.29 2.46 -840.15 -2.07 -18.36 16 7 C 0.65 26.77 7.83 179.06 1.40 28.18 16 8 O -0.51 -27.21 11.37 -3.96 -0.05 -27.26 16 9 N -0.66 -26.51 5.19 -322.13 -1.67 -28.19 16 10 C 0.36 18.25 7.43 133.26 0.99 19.24 16 11 C -0.35 -15.64 9.96 22.72 0.23 -15.41 16 12 C -0.03 -1.50 10.15 22.40 0.23 -1.27 16 13 C -0.33 -17.39 9.83 22.87 0.22 -17.16 16 14 C 0.24 14.12 6.55 40.19 0.26 14.38 16 15 C -0.47 -27.43 9.14 23.46 0.21 -27.22 16 16 H 0.09 4.69 7.85 -2.91 -0.02 4.66 16 17 C 0.01 0.51 5.50 85.29 0.47 0.98 16 18 N -0.68 -40.41 8.98 21.84 0.20 -40.21 16 19 Si 0.97 41.76 29.56 68.60 2.03 43.78 16 20 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 23 N -0.50 -30.02 5.73 -186.37 -1.07 -31.09 16 24 C 0.14 2.05 5.10 87.37 0.45 2.50 16 25 C -0.52 -9.57 5.75 72.31 0.42 -9.15 16 26 S 1.35 23.24 12.38 -56.49 -0.70 22.54 16 27 O -0.93 -30.11 17.82 -148.98 -2.65 -32.77 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.20 8.04 -2.39 -0.02 1.19 16 30 H 0.03 0.69 8.00 -2.39 -0.02 0.67 16 31 H 0.10 1.09 7.66 -2.38 -0.02 1.07 16 32 H 0.13 0.22 7.78 -2.39 -0.02 0.20 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 1.41 6.88 -2.39 -0.02 1.39 16 35 H 0.41 12.44 6.34 -92.71 -0.59 11.85 16 36 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 37 H 0.14 4.98 8.06 -2.91 -0.02 4.95 16 38 H 0.10 5.10 8.06 -2.91 -0.02 5.07 16 39 H 0.27 15.03 8.29 -92.71 -0.77 14.26 16 40 H 0.09 1.21 6.45 -2.39 -0.02 1.19 16 41 H 0.16 0.45 7.92 -2.39 -0.02 0.43 16 42 H 0.05 1.53 7.75 -4.12 -0.03 1.50 16 43 H 0.15 1.98 8.14 -4.18 -0.03 1.95 16 Total: -1.00 -96.56 354.21 0.71 -95.85 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.42 Total: 28.24 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 6.27 Total: -12.55 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -4.61 Total: -117.84 kcal Atomic # 8 Polarization: -57.33 SS G_CDS: -2.70 Total: -60.03 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 23.24 SS G_CDS: -0.70 Total: 22.54 kcal Total: -96.56 0.71 -95.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.607 kcal (2) G-P(sol) polarization free energy of solvation -96.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds