Wall clock time and date at job start Tue Mar 31 2020 20:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81401 * 103.00225 * 2 1 4 4 C 1.52998 * 109.47303 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46863 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47298 * 304.99498 * 5 4 3 7 7 C 1.53002 * 109.47096 * 185.00257 * 5 4 3 8 8 N 1.46498 * 109.47535 * 65.00223 * 5 4 3 9 9 C 1.34774 * 119.99954 * 205.00063 * 8 5 4 10 10 O 1.21357 * 120.00435 * 359.97438 * 9 8 5 11 11 C 1.49371 * 119.99627 * 180.02562 * 9 8 5 12 12 O 1.21358 * 119.99900 * 359.97438 * 11 9 8 13 13 N 1.34780 * 119.99689 * 180.27753 * 11 9 8 14 14 C 1.39112 * 119.99618 * 174.12415 * 13 11 9 15 15 C 1.39708 * 119.58018 * 341.02656 * 14 13 11 16 16 C 1.38656 * 119.49191 * 179.70947 * 15 14 13 17 17 C 1.38347 * 118.67075 * 0.56062 * 16 15 14 18 18 C 1.40596 * 119.13480 * 359.72962 * 17 16 15 19 19 C 1.41341 * 119.78116 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00105 * 6.33038 * 19 18 17 21 21 C 1.40034 * 119.99663 * 186.34081 * 19 18 17 22 22 N 1.30746 * 119.99822 * 353.64847 * 21 19 18 23 23 Si 1.86794 * 119.99906 * 173.65150 * 21 19 18 24 24 H 1.48491 * 109.47325 * 94.98473 * 23 21 19 25 25 H 1.48500 * 109.47038 * 214.98442 * 23 21 19 26 26 H 1.48505 * 109.47025 * 334.98020 * 23 21 19 27 27 N 1.31939 * 119.57618 * 161.30730 * 14 13 11 28 28 H 1.09004 * 109.47241 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46920 * 299.99877 * 1 2 3 30 30 H 1.08994 * 109.47446 * 59.99800 * 1 2 3 31 31 H 1.09003 * 109.46615 * 60.00290 * 3 2 1 32 32 H 1.09000 * 109.47201 * 300.00719 * 3 2 1 33 33 H 1.09003 * 109.47189 * 60.00468 * 4 3 2 34 34 H 1.08999 * 109.47299 * 299.99866 * 4 3 2 35 35 H 1.08996 * 109.47437 * 180.02562 * 7 5 4 36 36 H 1.09008 * 109.47017 * 300.00122 * 7 5 4 37 37 H 1.09006 * 109.47256 * 59.99507 * 7 5 4 38 38 H 0.97001 * 119.99772 * 24.99959 * 8 5 4 39 39 H 0.96993 * 119.99926 * 354.11580 * 13 11 9 40 40 H 1.07998 * 120.25131 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.66127 * 180.29028 * 16 15 14 42 42 H 1.07993 * 120.42876 * 179.74943 * 17 16 15 43 43 H 0.97003 * 119.99607 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0864 3.4307 0.0000 6 1 3.5935 3.9178 -0.8414 7 6 5.6013 3.6045 -0.1264 8 7 3.6282 4.0372 1.2523 9 6 3.3510 5.3553 1.3009 10 8 3.4815 6.0398 0.3074 11 6 2.8844 5.9737 2.5780 12 8 2.7543 5.2892 3.5716 13 7 2.6019 7.2907 2.6251 14 6 2.0518 7.8432 3.7772 15 6 1.4322 7.0113 4.7131 16 6 0.8899 7.5632 5.8637 17 6 0.9700 8.9325 6.0445 18 6 1.6009 9.7169 5.0629 19 6 1.6908 11.1170 5.2339 20 1 1.3686 11.5697 6.1600 21 6 2.1975 11.9172 4.2025 22 7 2.7020 11.3616 3.1318 23 14 2.1528 13.7782 4.3563 24 1 3.4510 14.2622 4.8905 25 1 1.9122 14.3797 3.0201 26 1 1.0593 14.1723 5.2806 27 7 2.1171 9.1469 3.9695 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8031 2.2370 0.8901 32 1 1.8030 2.2372 -0.8899 33 1 4.1608 1.4705 -0.8909 34 1 4.1616 1.4703 0.8891 35 1 5.8465 4.6665 -0.1255 36 1 6.0943 3.1174 0.7149 37 1 5.9423 3.1532 -1.0582 38 1 3.5242 3.4901 2.0466 39 1 2.7822 7.8532 1.8558 40 1 1.3798 5.9460 4.5436 41 1 0.4108 6.9372 6.6019 42 1 0.5535 9.3928 6.9282 43 1 3.0527 11.9160 2.4172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889940828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:00 Heat of formation + Delta-G solvation = -32.708751 kcal Electronic energy + Delta-G solvation = -26002.567049 eV Core-core repulsion = 22174.303255 eV Total energy + Delta-G solvation = -3828.263794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74012 -39.15358 -37.67610 -36.81446 -34.53401 -33.34599 -32.57522 -30.51255 -30.32102 -29.40767 -29.23599 -25.99618 -25.06981 -24.09976 -21.92661 -21.66646 -20.93550 -19.99489 -18.48413 -17.60680 -16.92866 -16.55802 -16.23967 -15.90893 -15.60894 -14.95042 -14.85110 -14.71249 -14.42868 -14.31908 -14.15472 -13.83141 -13.59015 -13.54619 -13.18575 -12.97015 -12.75489 -12.50833 -12.35870 -12.07933 -11.83742 -11.73090 -11.55171 -11.30834 -11.16535 -11.06279 -10.74000 -10.63920 -10.36652 -10.17170 -9.97145 -9.41678 -9.29486 -9.05124 -8.14410 -8.04917 -7.78369 -7.24625 -6.48421 -4.57589 1.29603 1.45021 2.21155 2.42929 2.69194 2.91248 3.07091 3.09818 3.18203 3.51791 3.79855 3.91624 4.27771 4.46934 4.52070 4.66733 4.71654 4.78493 4.80294 4.98626 5.08310 5.15336 5.34113 5.35779 5.42671 5.56271 5.70849 5.80237 5.95173 6.05316 6.15960 6.27771 6.60039 6.64192 6.71253 7.01456 7.09566 7.31303 7.37940 7.63143 7.75805 7.87350 7.99423 8.17738 8.38015 8.62578 8.86646 9.93899 10.25194 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017911 B = 0.002312 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.931138 B =12105.826311 C =13034.122878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.268 6.268 3 C -0.087 4.087 4 C -0.110 4.110 5 C 0.145 3.855 6 H 0.095 0.905 7 C -0.165 4.165 8 N -0.701 5.701 9 C 0.514 3.486 10 O -0.515 6.515 11 C 0.503 3.497 12 O -0.503 6.503 13 N -0.611 5.611 14 C 0.351 3.649 15 C -0.312 4.312 16 C -0.049 4.049 17 C -0.283 4.283 18 C 0.277 3.723 19 C -0.432 4.432 20 H 0.087 0.913 21 C 0.069 3.931 22 N -0.719 5.719 23 Si 0.909 3.091 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.261 1.261 27 N -0.502 5.502 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.413 0.587 39 H 0.419 0.581 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 -17.082 -8.687 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.042 6.042 3 C -0.236 4.236 4 C -0.149 4.149 5 C 0.040 3.960 6 H 0.113 0.887 7 C -0.223 4.223 8 N -0.356 5.356 9 C 0.295 3.705 10 O -0.389 6.389 11 C 0.283 3.717 12 O -0.378 6.378 13 N -0.257 5.257 14 C 0.117 3.883 15 C -0.337 4.337 16 C -0.073 4.073 17 C -0.305 4.305 18 C 0.151 3.849 19 C -0.463 4.463 20 H 0.105 0.895 21 C -0.156 4.156 22 N -0.340 5.340 23 Si 0.733 3.267 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.185 1.185 27 N -0.221 5.221 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.249 0.751 39 H 0.257 0.743 40 H 0.147 0.853 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.120 -17.388 -9.565 19.959 hybrid contribution -1.232 1.382 0.645 1.960 sum 0.888 -16.007 -8.920 18.346 Atomic orbital electron populations 1.23382 0.93817 1.06535 1.05198 1.86823 1.07861 1.11431 1.98123 1.23461 1.00166 0.94230 1.05715 1.21666 0.93162 0.95290 1.04817 1.21073 0.95657 0.92190 0.87122 0.88695 1.22188 0.94362 1.03322 1.02454 1.45862 1.66828 1.08522 1.14396 1.20186 0.78346 0.83083 0.88899 1.90774 1.50744 1.61421 1.35990 1.19886 0.80033 0.83233 0.88562 1.90684 1.50260 1.61870 1.35034 1.42883 1.58060 1.07879 1.16857 1.18431 0.92696 0.91300 0.85852 1.21535 1.12799 1.00577 0.98779 1.20803 0.96330 0.94523 0.95668 1.21758 1.11966 0.93939 1.02882 1.18199 0.87742 0.93313 0.85672 1.19590 1.35690 0.90020 1.01038 0.89492 1.26071 0.93589 1.01075 0.94848 1.70105 1.22744 1.36822 1.04362 0.86294 0.79590 0.82095 0.78754 1.19500 1.20070 1.18452 1.68040 1.23404 1.06523 1.24097 0.88069 0.90247 0.90442 0.89548 0.89758 0.88985 0.89934 0.91450 0.91985 0.91176 0.75080 0.74310 0.85273 0.88106 0.88000 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.76 101.05 1.09 0.30 16 2 S -0.27 -2.27 22.38 -107.50 -2.41 -4.68 16 3 C -0.09 -0.67 5.83 37.16 0.22 -0.46 16 4 C -0.11 -0.75 4.76 -26.73 -0.13 -0.88 16 5 C 0.15 1.26 2.57 -67.93 -0.17 1.08 16 6 H 0.10 0.91 7.58 -51.93 -0.39 0.52 16 7 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 8 N -0.70 -7.66 4.52 -54.26 -0.25 -7.91 16 9 C 0.51 7.65 7.85 -11.62 -0.09 7.56 16 10 O -0.51 -8.62 16.15 5.49 0.09 -8.53 16 11 C 0.50 9.12 7.73 -11.62 -0.09 9.03 16 12 O -0.50 -9.74 13.28 5.49 0.07 -9.66 16 13 N -0.61 -12.75 5.39 -11.83 -0.06 -12.81 16 14 C 0.35 8.65 7.50 -155.09 -1.16 7.49 16 15 C -0.31 -7.37 8.83 -38.88 -0.34 -7.71 16 16 C -0.05 -1.11 10.15 -39.39 -0.40 -1.51 16 17 C -0.28 -6.92 9.83 -38.65 -0.38 -7.30 16 18 C 0.28 7.52 6.54 -85.00 -0.56 6.97 16 19 C -0.43 -11.36 9.13 -37.73 -0.34 -11.70 16 20 H 0.09 2.13 7.85 -52.49 -0.41 1.72 16 21 C 0.07 1.74 5.49 -17.34 -0.10 1.64 16 22 N -0.72 -18.74 11.49 55.55 0.64 -18.10 16 23 Si 0.91 18.33 29.56 -169.99 -5.03 13.30 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 27 N -0.50 -13.66 7.92 -10.28 -0.08 -13.74 16 28 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.73 7.75 -51.92 -0.40 0.32 16 32 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.41 4.13 8.07 -40.82 -0.33 3.80 16 39 H 0.42 8.51 8.31 -40.82 -0.34 8.17 16 40 H 0.13 2.92 5.34 -52.50 -0.28 2.64 16 41 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 42 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 43 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -30.62 381.05 -9.33 -39.95 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -5.94 Total: 12.94 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.11 Total: 3.51 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.25 Total: -52.56 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.16 Total: -18.19 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.41 Total: -4.68 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.62 -9.33 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889940828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.239 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds