Wall clock time and date at job start Tue Mar 31 2020 20:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81401 * 103.00225 * 2 1 4 4 C 1.52998 * 109.47303 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46863 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47298 * 304.99498 * 5 4 3 7 7 C 1.53002 * 109.47096 * 185.00257 * 5 4 3 8 8 N 1.46498 * 109.47535 * 65.00223 * 5 4 3 9 9 C 1.34774 * 119.99954 * 205.00063 * 8 5 4 10 10 O 1.21357 * 120.00435 * 359.97438 * 9 8 5 11 11 C 1.49371 * 119.99627 * 180.02562 * 9 8 5 12 12 O 1.21358 * 119.99900 * 359.97438 * 11 9 8 13 13 N 1.34780 * 119.99689 * 180.27753 * 11 9 8 14 14 C 1.39112 * 119.99618 * 174.12415 * 13 11 9 15 15 C 1.39708 * 119.58018 * 341.02656 * 14 13 11 16 16 C 1.38656 * 119.49191 * 179.70947 * 15 14 13 17 17 C 1.38347 * 118.67075 * 0.56062 * 16 15 14 18 18 C 1.40596 * 119.13480 * 359.72962 * 17 16 15 19 19 C 1.41341 * 119.78116 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00105 * 6.33038 * 19 18 17 21 21 C 1.40034 * 119.99663 * 186.34081 * 19 18 17 22 22 N 1.30746 * 119.99822 * 353.64847 * 21 19 18 23 23 Si 1.86794 * 119.99906 * 173.65150 * 21 19 18 24 24 H 1.48491 * 109.47325 * 94.98473 * 23 21 19 25 25 H 1.48500 * 109.47038 * 214.98442 * 23 21 19 26 26 H 1.48505 * 109.47025 * 334.98020 * 23 21 19 27 27 N 1.31939 * 119.57618 * 161.30730 * 14 13 11 28 28 H 1.09004 * 109.47241 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46920 * 299.99877 * 1 2 3 30 30 H 1.08994 * 109.47446 * 59.99800 * 1 2 3 31 31 H 1.09003 * 109.46615 * 60.00290 * 3 2 1 32 32 H 1.09000 * 109.47201 * 300.00719 * 3 2 1 33 33 H 1.09003 * 109.47189 * 60.00468 * 4 3 2 34 34 H 1.08999 * 109.47299 * 299.99866 * 4 3 2 35 35 H 1.08996 * 109.47437 * 180.02562 * 7 5 4 36 36 H 1.09008 * 109.47017 * 300.00122 * 7 5 4 37 37 H 1.09006 * 109.47256 * 59.99507 * 7 5 4 38 38 H 0.97001 * 119.99772 * 24.99959 * 8 5 4 39 39 H 0.96993 * 119.99926 * 354.11580 * 13 11 9 40 40 H 1.07998 * 120.25131 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.66127 * 180.29028 * 16 15 14 42 42 H 1.07993 * 120.42876 * 179.74943 * 17 16 15 43 43 H 0.97003 * 119.99607 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0864 3.4307 0.0000 6 1 3.5935 3.9178 -0.8414 7 6 5.6013 3.6045 -0.1264 8 7 3.6282 4.0372 1.2523 9 6 3.3510 5.3553 1.3009 10 8 3.4815 6.0398 0.3074 11 6 2.8844 5.9737 2.5780 12 8 2.7543 5.2892 3.5716 13 7 2.6019 7.2907 2.6251 14 6 2.0518 7.8432 3.7772 15 6 1.4322 7.0113 4.7131 16 6 0.8899 7.5632 5.8637 17 6 0.9700 8.9325 6.0445 18 6 1.6009 9.7169 5.0629 19 6 1.6908 11.1170 5.2339 20 1 1.3686 11.5697 6.1600 21 6 2.1975 11.9172 4.2025 22 7 2.7020 11.3616 3.1318 23 14 2.1528 13.7782 4.3563 24 1 3.4510 14.2622 4.8905 25 1 1.9122 14.3797 3.0201 26 1 1.0593 14.1723 5.2806 27 7 2.1171 9.1469 3.9695 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8031 2.2370 0.8901 32 1 1.8030 2.2372 -0.8899 33 1 4.1608 1.4705 -0.8909 34 1 4.1616 1.4703 0.8891 35 1 5.8465 4.6665 -0.1255 36 1 6.0943 3.1174 0.7149 37 1 5.9423 3.1532 -1.0582 38 1 3.5242 3.4901 2.0466 39 1 2.7822 7.8532 1.8558 40 1 1.3798 5.9460 4.5436 41 1 0.4108 6.9372 6.6019 42 1 0.5535 9.3928 6.9282 43 1 3.0527 11.9160 2.4172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889940828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:59 Heat of formation + Delta-G solvation = -51.500403 kcal Electronic energy + Delta-G solvation = -26003.381916 eV Core-core repulsion = 22174.303255 eV Total energy + Delta-G solvation = -3829.078661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.14007 -40.60079 -39.35639 -37.79227 -36.20256 -35.15784 -33.50724 -32.39589 -31.32605 -30.96349 -29.76352 -27.74322 -26.49248 -24.92450 -23.60140 -23.26754 -21.90206 -21.45565 -19.91583 -19.37497 -18.22610 -17.81313 -17.39671 -17.10095 -16.84510 -16.54703 -16.38735 -15.88922 -15.65707 -15.37692 -15.21940 -14.86578 -14.82789 -14.69621 -14.22710 -14.14081 -13.89417 -13.85312 -13.41953 -13.27029 -13.15008 -12.95856 -12.75317 -12.63341 -12.44845 -12.37106 -12.11922 -11.86994 -11.83398 -11.68711 -11.08656 -10.98688 -10.59206 -10.39659 -10.04599 -9.69968 -9.10855 -8.70024 -8.34561 -6.54233 0.02507 0.70128 0.90828 1.11509 1.17407 1.42091 1.52598 1.57789 1.62481 2.05947 2.22856 2.50551 2.83845 3.27205 3.64549 3.82621 3.86027 3.90717 4.28427 4.29096 4.30537 4.31623 4.39815 4.52077 4.54944 4.70395 4.76798 4.80368 4.84349 4.86598 4.86941 4.91581 5.07214 5.19686 5.23729 5.31268 5.50137 5.54696 5.80069 5.88013 6.08479 6.17957 6.33678 6.63522 6.72475 6.81950 6.95321 8.03316 8.41781 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017911 B = 0.002312 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.931138 B =12105.826311 C =13034.122878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.299 6.299 3 C -0.083 4.083 4 C -0.100 4.100 5 C 0.145 3.855 6 H 0.089 0.911 7 C -0.162 4.162 8 N -0.679 5.679 9 C 0.524 3.476 10 O -0.535 6.535 11 C 0.505 3.495 12 O -0.513 6.513 13 N -0.619 5.619 14 C 0.339 3.661 15 C -0.319 4.319 16 C -0.045 4.045 17 C -0.299 4.299 18 C 0.242 3.758 19 C -0.462 4.462 20 H 0.095 0.905 21 C 0.024 3.976 22 N -0.755 5.755 23 Si 0.989 3.011 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.253 1.253 27 N -0.533 5.533 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.419 0.581 39 H 0.419 0.581 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.118 0.882 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.011 -18.034 -8.966 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.073 6.073 3 C -0.231 4.231 4 C -0.138 4.138 5 C 0.041 3.959 6 H 0.107 0.893 7 C -0.220 4.220 8 N -0.333 5.333 9 C 0.304 3.696 10 O -0.412 6.412 11 C 0.286 3.714 12 O -0.389 6.389 13 N -0.264 5.264 14 C 0.104 3.896 15 C -0.344 4.344 16 C -0.070 4.070 17 C -0.322 4.322 18 C 0.116 3.884 19 C -0.494 4.494 20 H 0.113 0.887 21 C -0.198 4.198 22 N -0.377 5.377 23 Si 0.809 3.191 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.177 1.177 27 N -0.253 5.253 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.257 0.743 39 H 0.257 0.743 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.136 0.864 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.169 -18.420 -9.843 20.997 hybrid contribution -1.248 1.488 0.720 2.072 sum 0.921 -16.931 -9.122 19.254 Atomic orbital electron populations 1.23434 0.92017 1.07421 1.05546 1.86896 1.10002 1.12208 1.98171 1.23439 1.00733 0.93529 1.05399 1.21614 0.92640 0.93593 1.05982 1.21277 0.96085 0.93154 0.85425 0.89301 1.22173 0.93683 1.02052 1.04141 1.45884 1.64829 1.06912 1.15712 1.19543 0.78831 0.84174 0.87080 1.90778 1.52203 1.62161 1.36019 1.20501 0.78894 0.82219 0.89755 1.90649 1.50466 1.61827 1.35943 1.42935 1.58640 1.08936 1.15899 1.18800 0.92667 0.91029 0.87057 1.21802 1.12612 1.01017 0.98985 1.21209 0.95369 0.94377 0.96015 1.21958 1.12375 0.94710 1.03109 1.18726 0.88619 0.94423 0.86605 1.19982 1.36854 0.90447 1.02114 0.88663 1.27016 0.92581 1.06179 0.94030 1.70201 1.23330 1.38959 1.05191 0.85091 0.79802 0.75259 0.78940 1.18862 1.19425 1.17689 1.68035 1.24623 1.07818 1.24814 0.86972 0.90235 0.89750 0.90386 0.89552 0.87308 0.89253 0.93810 0.91140 0.88847 0.74266 0.74347 0.84220 0.84433 0.86418 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 10.76 113.37 1.22 -0.12 16 2 S -0.30 -4.61 22.38 -56.49 -1.26 -5.88 16 3 C -0.08 -1.14 5.83 71.98 0.42 -0.72 16 4 C -0.10 -1.12 4.76 30.59 0.15 -0.97 16 5 C 0.15 2.25 2.57 44.99 0.12 2.37 16 6 H 0.09 1.57 7.58 -2.39 -0.02 1.55 16 7 C -0.16 -2.35 9.48 71.98 0.68 -1.66 16 8 N -0.68 -13.98 4.52 -443.95 -2.01 -15.99 16 9 C 0.52 15.39 7.85 87.24 0.68 16.08 16 10 O -0.53 -17.90 16.15 -3.27 -0.05 -17.95 16 11 C 0.50 18.35 7.73 87.24 0.67 19.03 16 12 O -0.51 -19.61 13.28 -3.27 -0.04 -19.66 16 13 N -0.62 -26.42 5.39 -309.69 -1.67 -28.09 16 14 C 0.34 17.05 7.50 133.30 1.00 18.05 16 15 C -0.32 -15.05 8.83 22.73 0.20 -14.85 16 16 C -0.05 -2.04 10.15 22.40 0.23 -1.82 16 17 C -0.30 -14.72 9.83 22.87 0.22 -14.50 16 18 C 0.24 13.51 6.54 40.20 0.26 13.77 16 19 C -0.46 -24.82 9.13 23.47 0.21 -24.61 16 20 H 0.10 4.73 7.85 -2.91 -0.02 4.70 16 21 C 0.02 1.20 5.49 85.29 0.47 1.67 16 22 N -0.75 -40.31 11.49 21.84 0.25 -40.06 16 23 Si 0.99 37.69 29.56 68.60 2.03 39.71 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 25 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 27 N -0.53 -29.93 7.92 -186.42 -1.48 -31.41 16 28 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.20 7.75 -2.39 -0.02 1.18 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.42 7.71 8.07 -92.71 -0.75 6.97 16 39 H 0.42 17.69 8.31 -92.71 -0.77 16.92 16 40 H 0.14 6.22 5.34 -3.14 -0.02 6.20 16 41 H 0.14 5.05 8.06 -2.91 -0.02 5.03 16 42 H 0.12 5.24 8.06 -2.91 -0.02 5.21 16 43 H 0.28 13.50 8.29 -92.71 -0.77 12.73 16 Total: -1.00 -67.32 381.05 1.84 -65.48 By element: Atomic # 1 Polarization: 42.61 SS G_CDS: -0.46 Total: 42.14 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 6.54 Total: 11.71 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -4.90 Total: -115.56 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.10 Total: -37.61 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.71 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -1.26 Total: -5.88 kcal Total: -67.32 1.84 -65.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889940828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.977 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds