Wall clock time and date at job start Tue Mar 31 2020 20:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81406 * 102.99997 * 2 1 4 4 C 1.53001 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46873 * 180.02562 * 4 3 2 6 6 H 1.08990 * 109.47655 * 54.99257 * 5 4 3 7 7 C 1.53003 * 109.46900 * 174.99936 * 5 4 3 8 8 N 1.46508 * 109.46730 * 294.99181 * 5 4 3 9 9 C 1.34781 * 119.99526 * 155.00334 * 8 5 4 10 10 O 1.21354 * 120.00061 * 0.02562 * 9 8 5 11 11 C 1.49370 * 119.99483 * 180.02562 * 9 8 5 12 12 O 1.21349 * 120.00037 * 0.02562 * 11 9 8 13 13 N 1.34781 * 119.99483 * 180.02562 * 11 9 8 14 14 C 1.39112 * 119.99422 * 185.53310 * 13 11 9 15 15 C 1.39713 * 119.57392 * 174.99171 * 14 13 11 16 16 C 1.38647 * 119.48904 * 179.97438 * 15 14 13 17 17 C 1.38347 * 118.67509 * 359.74392 * 16 15 14 18 18 C 1.40595 * 119.13208 * 0.47752 * 17 16 15 19 19 C 1.41340 * 119.77999 * 179.78878 * 18 17 16 20 20 H 1.07994 * 120.00278 * 5.84458 * 19 18 17 21 21 C 1.40032 * 119.99759 * 185.84223 * 19 18 17 22 22 N 1.30747 * 119.99900 * 5.91343 * 21 19 18 23 23 Si 1.86795 * 120.00036 * 185.91484 * 21 19 18 24 24 H 1.48503 * 109.47008 * 265.00320 * 23 21 19 25 25 H 1.48497 * 109.47495 * 25.00047 * 23 21 19 26 26 H 1.48499 * 109.47256 * 145.00530 * 23 21 19 27 27 N 1.31929 * 119.58070 * 354.96475 * 14 13 11 28 28 H 1.08997 * 109.47201 * 59.99476 * 1 2 3 29 29 H 1.08999 * 109.46933 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46692 * 300.00056 * 1 2 3 31 31 H 1.09004 * 109.47205 * 59.99761 * 3 2 1 32 32 H 1.09002 * 109.47140 * 300.00053 * 3 2 1 33 33 H 1.08992 * 109.47270 * 59.99720 * 4 3 2 34 34 H 1.09002 * 109.46781 * 299.99852 * 4 3 2 35 35 H 1.09001 * 109.47125 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.46827 * 299.99521 * 7 5 4 37 37 H 1.09001 * 109.47120 * 59.99447 * 7 5 4 38 38 H 0.96997 * 119.99875 * 335.00722 * 8 5 4 39 39 H 0.97001 * 120.00163 * 5.53171 * 13 11 9 40 40 H 1.08002 * 120.25175 * 359.97438 * 15 14 13 41 41 H 1.08006 * 120.66033 * 179.97438 * 16 15 14 42 42 H 1.07997 * 120.43189 * 180.26556 * 17 16 15 43 43 H 0.96998 * 119.99933 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7424 1.9400 -0.0006 5 6 4.0864 3.4308 0.0000 6 1 3.5942 3.9170 0.8421 7 6 5.6014 3.6045 0.1251 8 7 3.6270 4.0385 -1.2514 9 6 3.3498 5.3567 -1.2984 10 8 3.4812 6.0402 -0.3043 11 6 2.8809 5.9761 -2.5742 12 8 2.7490 5.2925 -3.5681 13 7 2.6042 7.2944 -2.6213 14 6 2.0587 7.8497 -3.7742 15 6 1.6777 9.1939 -3.7786 16 6 1.1348 9.7457 -4.9288 17 6 0.9911 8.9429 -6.0463 18 6 1.3891 7.5962 -5.9774 19 6 1.2443 6.7626 -7.1095 20 1 0.9183 7.1811 -8.0502 21 6 1.5235 5.3939 -7.0115 22 7 1.8058 4.8659 -5.8491 23 14 1.4928 4.3225 -8.5413 24 1 0.1600 3.6801 -8.6690 25 1 1.7548 5.1611 -9.7384 26 1 2.5391 3.2742 -8.4326 27 7 1.9081 7.1005 -4.8497 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8031 2.2372 0.8900 32 1 1.8032 2.2372 -0.8900 33 1 4.1609 1.4705 -0.8908 34 1 4.1616 1.4703 0.8892 35 1 5.8467 4.6665 0.1251 36 1 5.9433 3.1523 1.0561 37 1 6.0937 3.1182 -0.7172 38 1 3.5223 3.4922 -2.0460 39 1 2.7854 7.8558 -1.8513 40 1 1.8053 9.7985 -2.8927 41 1 0.8334 10.7826 -4.9530 42 1 0.5755 9.3445 -6.9586 43 1 1.9988 3.9178 -5.7811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889940829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:02 Heat of formation + Delta-G solvation = -21.894628 kcal Electronic energy + Delta-G solvation = -26695.522633 eV Core-core repulsion = 22867.727775 eV Total energy + Delta-G solvation = -3827.794858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33765 -38.82182 -37.37242 -36.58190 -34.35006 -33.16242 -32.33223 -30.41978 -30.15755 -29.22688 -29.11859 -25.86121 -24.94551 -23.92576 -21.94781 -21.31511 -20.76135 -19.66477 -18.34028 -17.19703 -16.82823 -16.42462 -16.07448 -15.46790 -15.22922 -14.82256 -14.67955 -14.50982 -14.27853 -14.12812 -13.78971 -13.71888 -13.50201 -13.34492 -13.07551 -12.91268 -12.64967 -12.38360 -12.04776 -12.02837 -11.70875 -11.52379 -11.23512 -11.06715 -11.01870 -10.99138 -10.71883 -10.55178 -10.24962 -10.03181 -9.78846 -9.22175 -9.10695 -9.02518 -8.07207 -7.92693 -7.36105 -7.08622 -6.29204 -4.46426 1.42134 1.87656 2.33323 2.73563 2.79984 3.06010 3.12786 3.15243 3.21653 3.92742 3.99904 4.03456 4.41002 4.60064 4.66326 4.83461 4.89398 4.92271 4.96552 5.10632 5.21070 5.27862 5.45497 5.47341 5.54370 5.68871 5.82996 5.93672 6.04123 6.04647 6.34878 6.41449 6.54855 6.72539 6.77430 7.13477 7.24359 7.46936 7.49810 7.73873 7.87074 8.01546 8.14319 8.34526 8.60627 8.89551 8.98852 10.11169 10.37986 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.003514 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.106600 B = 7965.299265 C = 9756.686685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.270 6.270 3 C -0.086 4.086 4 C -0.110 4.110 5 C 0.146 3.854 6 H 0.092 0.908 7 C -0.163 4.163 8 N -0.702 5.702 9 C 0.510 3.490 10 O -0.533 6.533 11 C 0.466 3.534 12 O -0.389 6.389 13 N -0.639 5.639 14 C 0.368 3.632 15 C -0.349 4.349 16 C -0.036 4.036 17 C -0.301 4.301 18 C 0.273 3.727 19 C -0.426 4.426 20 H 0.084 0.916 21 C 0.062 3.938 22 N -0.666 5.666 23 Si 0.898 3.102 24 H -0.272 1.272 25 H -0.262 1.262 26 H -0.277 1.277 27 N -0.477 5.477 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.414 0.586 39 H 0.411 0.589 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -8.290 12.079 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.044 6.044 3 C -0.234 4.234 4 C -0.149 4.149 5 C 0.040 3.960 6 H 0.110 0.890 7 C -0.222 4.222 8 N -0.357 5.357 9 C 0.292 3.708 10 O -0.410 6.410 11 C 0.243 3.757 12 O -0.252 6.252 13 N -0.287 5.287 14 C 0.130 3.870 15 C -0.374 4.374 16 C -0.060 4.060 17 C -0.324 4.324 18 C 0.148 3.852 19 C -0.456 4.456 20 H 0.102 0.898 21 C -0.167 4.167 22 N -0.285 5.285 23 Si 0.722 3.278 24 H -0.197 1.197 25 H -0.186 1.186 26 H -0.202 1.202 27 N -0.196 5.196 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.250 0.750 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.500 -10.383 12.181 16.384 hybrid contribution -1.130 1.517 -0.546 1.969 sum 2.371 -8.867 11.634 14.819 Atomic orbital electron populations 1.23376 0.93840 1.06460 1.05212 1.86780 1.07866 1.11618 1.98126 1.23452 1.00154 0.94088 1.05737 1.21659 0.93174 0.95430 1.04656 1.21016 0.95420 0.92110 0.87463 0.88973 1.22174 0.94619 1.03101 1.02286 1.45899 1.66737 1.08870 1.14201 1.20813 0.77524 0.82869 0.89596 1.90692 1.51934 1.61731 1.36620 1.20134 0.82672 0.84169 0.88744 1.91189 1.41745 1.59728 1.32520 1.42999 1.61675 1.08259 1.15807 1.18521 0.92509 0.88667 0.87282 1.20512 1.21671 0.94980 1.00283 1.20590 0.95407 0.97284 0.92710 1.21657 1.15246 0.96787 0.98705 1.18347 0.87493 0.89048 0.90288 1.19584 1.38019 0.92135 0.95864 0.89818 1.26125 0.94755 0.98978 0.96800 1.70231 1.23099 1.12189 1.22972 0.86472 0.78571 0.80030 0.82723 1.19733 1.18627 1.20171 1.68574 1.19945 1.33406 0.97659 0.90169 0.88132 0.90519 0.89902 0.89380 0.89955 0.89207 0.91616 0.91393 0.92032 0.74955 0.75319 0.88721 0.88353 0.88357 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.76 101.05 1.09 0.10 16 2 S -0.27 -2.74 22.38 -107.50 -2.41 -5.14 16 3 C -0.09 -0.82 5.83 37.16 0.22 -0.60 16 4 C -0.11 -0.93 4.76 -26.73 -0.13 -1.06 16 5 C 0.15 1.48 2.57 -67.92 -0.17 1.30 16 6 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 7 C -0.16 -1.53 9.48 37.16 0.35 -1.17 16 8 N -0.70 -9.06 4.52 -54.26 -0.25 -9.31 16 9 C 0.51 8.33 7.85 -11.62 -0.09 8.24 16 10 O -0.53 -9.22 16.15 5.49 0.09 -9.13 16 11 C 0.47 9.37 7.84 -11.62 -0.09 9.28 16 12 O -0.39 -9.04 12.35 5.50 0.07 -8.97 16 13 N -0.64 -13.06 5.37 -11.83 -0.06 -13.12 16 14 C 0.37 8.91 7.42 -155.09 -1.15 7.76 16 15 C -0.35 -7.78 9.95 -38.88 -0.39 -8.17 16 16 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 17 C -0.30 -7.40 9.83 -38.65 -0.38 -7.78 16 18 C 0.27 7.48 6.53 -85.00 -0.55 6.93 16 19 C -0.43 -11.36 9.13 -37.73 -0.34 -11.70 16 20 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 21 C 0.06 1.57 5.48 -17.34 -0.10 1.48 16 22 N -0.67 -17.49 9.18 55.55 0.51 -16.98 16 23 Si 0.90 18.61 29.56 -169.99 -5.03 13.58 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 27 N -0.48 -13.02 5.77 -10.28 -0.06 -13.08 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.09 0.95 7.75 -51.92 -0.40 0.55 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.41 5.31 8.07 -40.82 -0.33 4.98 16 39 H 0.41 7.19 8.18 -40.82 -0.33 6.86 16 40 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -31.15 379.37 -9.64 -40.78 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.08 Total: 12.26 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.14 Total: 3.39 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.14 Total: -52.49 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.16 Total: -18.10 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.41 Total: -5.14 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.15 -9.64 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889940829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.889 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds