Wall clock time and date at job start Tue Mar 31 2020 20:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47203 * 2 1 4 4 S 1.81405 * 109.46985 * 119.99640 * 2 1 3 5 5 C 1.81400 * 103.00009 * 175.00230 * 4 2 1 6 6 C 1.52998 * 109.47342 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.47452 * 180.02562 * 6 5 4 8 8 C 1.34775 * 119.99944 * 179.97438 * 7 6 5 9 9 O 1.21348 * 120.00209 * 0.02562 * 8 7 6 10 10 C 1.49371 * 119.99920 * 179.97438 * 8 7 6 11 11 O 1.21362 * 119.99781 * 0.02562 * 10 8 7 12 12 N 1.34775 * 119.99920 * 179.97438 * 10 8 7 13 13 C 1.39117 * 119.99568 * 185.60784 * 12 10 8 14 14 C 1.39708 * 119.57852 * 18.94636 * 13 12 10 15 15 C 1.38649 * 119.49082 * 180.02562 * 14 13 12 16 16 C 1.38354 * 118.67491 * 359.72950 * 15 14 13 17 17 C 1.40597 * 119.12796 * 0.53083 * 16 15 14 18 18 C 1.41346 * 119.78200 * 179.72961 * 17 16 15 19 19 H 1.08000 * 119.99622 * 7.00235 * 18 17 16 20 20 C 1.40024 * 119.99818 * 187.00431 * 18 17 16 21 21 N 1.30740 * 119.99814 * 181.90660 * 20 18 17 22 22 Si 1.86797 * 120.00331 * 1.90544 * 20 18 17 23 23 H 1.48499 * 109.47090 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47238 * 300.00224 * 22 20 18 25 25 H 1.48506 * 109.46836 * 59.99940 * 22 20 18 26 26 N 1.31931 * 119.57822 * 198.96091 * 13 12 10 27 27 H 1.08998 * 109.47061 * 300.00147 * 1 2 3 28 28 H 1.09003 * 109.46761 * 60.00407 * 1 2 3 29 29 H 1.08998 * 109.46756 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47393 * 239.99464 * 2 1 3 31 31 H 1.08995 * 109.47034 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46641 * 299.99944 * 3 2 1 33 33 H 1.08999 * 109.46975 * 59.99221 * 3 2 1 34 34 H 1.08996 * 109.47154 * 60.00119 * 5 4 2 35 35 H 1.09004 * 109.47101 * 300.00047 * 5 4 2 36 36 H 1.09002 * 109.46888 * 59.99488 * 6 5 4 37 37 H 1.09004 * 109.46993 * 300.00030 * 6 5 4 38 38 H 0.97001 * 119.99523 * 359.97438 * 7 6 5 39 39 H 0.96991 * 120.00352 * 5.61391 * 12 10 8 40 40 H 1.08000 * 120.25769 * 359.97438 * 14 13 12 41 41 H 1.08002 * 120.66570 * 180.02562 * 15 14 13 42 42 H 1.07993 * 120.43559 * 180.28061 * 16 15 14 43 43 H 0.97007 * 120.00076 * 354.82632 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 3.9308 -0.8873 1.2292 6 6 4.5994 -1.5889 2.4131 7 7 6.0500 -1.6144 2.2098 8 6 6.8497 -2.1862 3.1318 9 8 6.3681 -2.6802 4.1301 10 6 8.3287 -2.2127 2.9243 11 8 8.8102 -1.7190 1.9257 12 7 9.1284 -2.7840 3.8465 13 6 10.5109 -2.7066 3.7120 14 6 11.0694 -1.7331 2.8801 15 6 12.4474 -1.6580 2.7470 16 6 13.2323 -2.5530 3.4521 17 6 12.6098 -3.5133 4.2689 18 6 13.3981 -4.4380 4.9909 19 1 14.4732 -4.3360 5.0048 20 6 12.7852 -5.4863 5.6881 21 7 13.5113 -6.3197 6.3863 22 14 10.9300 -5.6941 5.6205 23 1 10.5336 -6.8700 6.4363 24 1 10.2754 -4.4745 6.1583 25 1 10.5064 -5.9035 4.2126 26 7 11.2777 -3.5538 4.3715 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 4.3053 0.1334 1.1525 35 1 4.1591 -1.4281 0.3107 36 1 4.2248 -2.6096 2.4893 37 1 4.3711 -1.0485 3.3318 38 1 6.4349 -1.2198 1.4116 39 1 8.7401 -3.2491 4.6039 40 1 10.4327 -1.0448 2.3442 41 1 12.8994 -0.9126 2.1093 42 1 14.3087 -2.5170 3.3730 43 1 14.4791 -6.2581 6.3616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890284357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:06 Heat of formation + Delta-G solvation = -48.611826 kcal Electronic energy + Delta-G solvation = -25430.888932 eV Core-core repulsion = 21601.935529 eV Total energy + Delta-G solvation = -3828.953403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92375 -39.30170 -38.01088 -36.00710 -35.29583 -34.68887 -33.55554 -31.28902 -31.15780 -29.75061 -27.83462 -26.02036 -25.17911 -23.51348 -22.17349 -21.93986 -21.52062 -20.09041 -18.93926 -18.21842 -17.14587 -16.86920 -16.52712 -16.26064 -16.00416 -15.46052 -15.30261 -15.15587 -14.76346 -14.43852 -14.12960 -14.07356 -13.82251 -13.59094 -13.13584 -12.84499 -12.77647 -12.67742 -12.32879 -12.28505 -12.06464 -12.00100 -11.82434 -11.78897 -11.68024 -10.97383 -10.79488 -10.43021 -10.31823 -10.12861 -9.69184 -9.56222 -9.35327 -9.20464 -8.65851 -8.16808 -7.87199 -7.53048 -7.30033 -4.85101 0.97236 1.21800 1.98328 2.31386 2.46281 2.55476 3.24986 3.54430 3.60091 3.66450 3.97347 4.14527 4.20923 4.29479 4.35674 4.35894 4.41080 4.58534 4.67890 4.84777 5.02746 5.12389 5.18632 5.25924 5.29198 5.38518 5.44449 5.58367 5.59225 5.72867 5.85330 5.92742 6.29349 6.34027 6.42409 6.78412 6.97037 7.06041 7.33335 7.40017 7.46296 7.62709 7.65198 7.97938 8.06515 8.26494 8.56613 9.29799 9.95276 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.025019 B = 0.002064 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.860379 B =13561.256443 C =14545.846714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C -0.150 4.150 4 S -0.235 6.235 5 C -0.107 4.107 6 C 0.135 3.865 7 N -0.702 5.702 8 C 0.515 3.485 9 O -0.509 6.509 10 C 0.510 3.490 11 O -0.495 6.495 12 N -0.622 5.622 13 C 0.382 3.618 14 C -0.310 4.310 15 C -0.034 4.034 16 C -0.270 4.270 17 C 0.272 3.728 18 C -0.472 4.472 19 H 0.085 0.915 20 C 0.043 3.957 21 N -0.801 5.801 22 Si 1.153 2.847 23 H -0.330 1.330 24 H -0.282 1.282 25 H -0.293 1.293 26 N -0.594 5.594 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.414 0.586 39 H 0.420 0.580 40 H 0.138 0.862 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.050 12.529 -12.216 28.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.191 4.191 3 C -0.209 4.209 4 S -0.009 6.009 5 C -0.256 4.256 6 C 0.011 3.989 7 N -0.357 5.357 8 C 0.295 3.705 9 O -0.383 6.383 10 C 0.290 3.710 11 O -0.369 6.369 12 N -0.268 5.268 13 C 0.152 3.848 14 C -0.335 4.335 15 C -0.058 4.058 16 C -0.292 4.292 17 C 0.148 3.852 18 C -0.504 4.504 19 H 0.103 0.897 20 C -0.178 4.178 21 N -0.423 5.423 22 Si 0.989 3.011 23 H -0.263 1.263 24 H -0.211 1.211 25 H -0.221 1.221 26 N -0.320 5.320 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.250 0.750 39 H 0.258 0.742 40 H 0.156 0.844 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.124 10.596 -10.194 28.252 hybrid contribution 2.716 1.962 -2.197 4.007 sum -21.408 12.558 -12.392 27.741 Atomic orbital electron populations 1.21612 0.91514 1.03170 1.02931 1.23141 0.99964 0.98613 0.97372 1.22124 1.01287 0.94365 1.03154 1.86998 1.03810 1.77473 1.32615 1.23547 0.95202 1.04757 1.02102 1.21061 0.78413 1.02117 0.97273 1.45634 1.06639 1.59080 1.24372 1.20027 0.87533 0.79320 0.83623 1.90804 1.76134 1.43798 1.27605 1.19865 0.87247 0.80292 0.83597 1.90694 1.75204 1.43918 1.27132 1.42933 1.05114 1.52479 1.26311 1.18020 0.81478 0.91776 0.93568 1.21459 0.95540 1.05496 1.10958 1.20918 0.93146 0.96143 0.95641 1.21653 0.99115 1.02540 1.05928 1.18277 0.85947 0.91309 0.89643 1.20763 0.95535 1.08412 1.25649 0.89671 1.27786 1.10585 0.90637 0.88815 1.70645 1.09450 1.33488 1.28710 0.81841 0.70216 0.73062 0.76012 1.26296 1.21050 1.22141 1.65960 1.06755 1.28319 1.30927 0.91534 0.90939 0.91504 0.89328 0.92396 0.91564 0.91161 0.88956 0.89031 0.89736 0.89753 0.74950 0.74197 0.84424 0.87353 0.87434 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 9.20 37.16 0.34 -0.25 16 2 C -0.06 -0.32 3.38 -26.73 -0.09 -0.41 16 3 C -0.15 -0.68 9.10 37.16 0.34 -0.34 16 4 S -0.24 -1.73 21.15 -107.50 -2.27 -4.01 16 5 C -0.11 -0.68 5.75 37.16 0.21 -0.47 16 6 C 0.14 1.17 5.68 -4.04 -0.02 1.15 16 7 N -0.70 -7.15 5.55 -60.76 -0.34 -7.48 16 8 C 0.52 7.26 7.89 -11.62 -0.09 7.17 16 9 O -0.51 -8.28 16.48 5.50 0.09 -8.19 16 10 C 0.51 8.55 7.73 -11.62 -0.09 8.46 16 11 O -0.50 -8.72 13.27 5.49 0.07 -8.65 16 12 N -0.62 -12.12 5.40 -11.83 -0.06 -12.18 16 13 C 0.38 8.73 7.50 -155.09 -1.16 7.57 16 14 C -0.31 -6.71 8.83 -38.88 -0.34 -7.05 16 15 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 16 C -0.27 -6.27 9.83 -38.65 -0.38 -6.65 16 17 C 0.27 7.07 6.39 -85.00 -0.54 6.52 16 18 C -0.47 -12.73 9.58 -37.73 -0.36 -13.09 16 19 H 0.09 2.27 8.05 -52.49 -0.42 1.85 16 20 C 0.04 1.18 5.52 -17.35 -0.10 1.08 16 21 N -0.80 -21.73 13.65 55.55 0.76 -20.97 16 22 Si 1.15 28.50 25.53 -169.99 -4.34 24.16 16 23 H -0.33 -8.07 7.11 56.52 0.40 -7.67 16 24 H -0.28 -6.80 6.70 56.52 0.38 -6.42 16 25 H -0.29 -7.32 7.10 56.52 0.40 -6.92 16 26 N -0.59 -15.08 4.59 -10.28 -0.05 -15.13 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.26 6.92 -51.93 -0.36 -0.10 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.50 7.14 -51.93 -0.37 0.13 16 35 H 0.09 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.41 3.53 7.94 -40.82 -0.32 3.21 16 39 H 0.42 7.87 8.31 -40.82 -0.34 7.53 16 40 H 0.14 2.81 5.33 -52.50 -0.28 2.53 16 41 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 43 H 0.28 7.33 8.72 -40.82 -0.36 6.97 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -30.51 374.87 -9.10 -39.61 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.92 Total: 4.63 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.69 Total: 2.57 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.31 Total: -55.77 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.16 Total: -16.84 kcal Atomic # 14 Polarization: 28.50 SS G_CDS: -4.34 Total: 24.16 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.27 Total: -4.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.51 -9.10 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890284357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.998 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds