Wall clock time and date at job start Tue Mar 31 2020 20:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.50327 * 2 1 4 4 C 1.53196 * 109.49609 * 239.93225 * 2 1 3 5 5 N 1.46932 * 108.77534 * 185.41740 * 4 2 1 6 6 C 1.36930 * 120.62866 * 233.58984 * 5 4 2 7 7 H 1.08004 * 120.00251 * 152.61473 * 6 5 4 8 8 C 1.38817 * 120.00119 * 332.61213 * 6 5 4 9 9 N 1.31621 * 120.00079 * 159.31758 * 8 6 5 10 10 Si 1.86796 * 119.99855 * 339.31485 * 8 6 5 11 11 H 1.48504 * 109.47139 * 92.97115 * 10 8 6 12 12 H 1.48504 * 109.47073 * 212.97249 * 10 8 6 13 13 H 1.48500 * 109.47382 * 332.96892 * 10 8 6 14 14 C 1.46921 * 118.73553 * 53.60690 * 5 4 2 15 15 C 1.53187 * 108.78334 * 306.39187 * 14 5 4 16 16 C 1.53043 * 109.33534 * 54.61946 * 15 14 5 17 17 H 1.09000 * 109.43318 * 58.69417 * 16 15 14 18 18 N 1.46505 * 109.48324 * 178.64929 * 16 15 14 19 19 C 1.34772 * 120.00111 * 275.08351 * 18 16 15 20 20 O 1.21631 * 119.99736 * 0.02562 * 19 18 16 21 21 C 1.47162 * 120.00256 * 180.02562 * 19 18 16 22 22 C 1.36620 * 125.16479 * 179.72308 * 21 19 18 23 23 C 1.36791 * 114.74698 * 179.78762 * 22 21 19 24 24 C 1.36617 * 114.74491 * 0.50243 * 23 22 21 25 25 C 1.47164 * 125.16091 * 179.76484 * 24 23 22 26 26 N 1.34779 * 119.99820 * 179.97438 * 25 24 23 27 27 O 1.21621 * 120.00288 * 359.97438 * 25 24 23 28 28 S 1.75838 * 109.67678 * 359.72414 * 24 23 22 29 29 H 1.08998 * 109.47182 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46823 * 59.99382 * 1 2 3 31 31 H 1.09007 * 109.46825 * 300.00411 * 1 2 3 32 32 H 1.08997 * 109.58940 * 305.20488 * 4 2 1 33 33 H 1.08996 * 109.58534 * 65.48848 * 4 2 1 34 34 H 0.96996 * 119.99804 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.58844 * 66.18405 * 14 5 4 36 36 H 1.09001 * 109.58256 * 186.60256 * 14 5 4 37 37 H 1.08995 * 109.50155 * 174.58779 * 15 14 5 38 38 H 1.09001 * 109.49726 * 294.65647 * 15 14 5 39 39 H 0.96994 * 119.99716 * 95.08551 * 18 16 15 40 40 H 1.08004 * 122.62200 * 359.97438 * 22 21 19 41 41 H 1.08000 * 122.62929 * 180.23426 * 23 22 21 42 42 H 0.97001 * 120.00352 * 359.97438 * 26 25 24 43 43 H 0.97004 * 120.00091 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5046 -0.8290 -1.1698 6 6 4.2936 -0.3789 -2.1945 7 1 5.3005 -0.0440 -1.9938 8 6 3.7991 -0.3531 -3.4914 9 7 4.3572 0.4265 -4.3931 10 14 2.3419 -1.4251 -3.9568 11 1 1.0855 -0.6501 -3.7946 12 1 2.4774 -1.8580 -5.3708 13 1 2.3041 -2.6193 -3.0750 14 6 4.1052 -1.4269 0.0304 15 6 3.5709 -0.6956 1.2659 16 6 2.0408 -0.7228 1.2486 17 1 1.6966 -1.7570 1.2358 18 7 1.5265 -0.0523 2.4453 19 6 1.3984 -0.7372 3.5990 20 8 1.7101 -1.9119 3.6466 21 6 0.8813 -0.0638 4.8010 22 6 0.7038 -0.6557 6.0195 23 6 0.2135 0.1719 6.9920 24 6 -0.0291 1.4529 6.5840 25 6 -0.5606 2.5278 7.4371 26 7 -0.7601 3.7584 6.9248 27 8 -0.8199 2.3058 8.6045 28 16 0.3911 1.6228 4.8850 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 1.6052 -1.7213 -1.2985 33 1 1.7616 -0.1587 -2.1390 34 1 4.0119 0.4442 -5.2993 35 1 3.8374 -2.4820 0.0861 36 1 5.1895 -1.3248 -0.0141 37 1 3.9334 -1.1905 2.1668 38 1 3.9164 0.3382 1.2545 39 1 1.2783 0.8846 2.4074 40 1 0.9355 -1.6948 6.2013 41 1 0.0284 -0.1623 8.0022 42 1 -0.5530 3.9357 5.9939 43 1 -1.1108 4.4669 7.4870 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943496231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:15 Heat of formation + Delta-G solvation = -19.484616 kcal Electronic energy + Delta-G solvation = -26550.656974 eV Core-core repulsion = 22722.966622 eV Total energy + Delta-G solvation = -3827.690352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.24178 -39.95192 -38.26288 -37.21792 -34.82383 -34.28429 -32.66688 -32.04924 -30.79358 -29.79368 -26.62063 -26.16059 -24.84109 -22.92322 -22.24020 -21.37394 -20.96297 -20.05975 -19.55545 -18.87759 -17.56018 -17.12388 -16.77707 -16.29534 -15.93372 -15.47209 -15.20105 -15.11893 -14.79735 -14.37064 -14.17584 -13.82549 -13.55747 -13.39868 -13.33446 -12.96329 -12.78655 -12.64256 -12.42479 -11.99605 -11.71608 -11.63893 -11.53616 -10.99541 -10.79853 -10.73950 -10.59818 -10.38999 -10.32507 -10.28982 -10.03900 -9.79009 -9.53155 -9.37522 -9.15314 -8.96100 -8.68055 -7.04966 -5.99929 -3.36160 -0.35926 0.79406 1.17177 1.66073 2.62953 2.86608 2.92976 2.96421 3.26630 3.45395 3.48089 4.30321 4.47307 4.48428 4.72154 4.84673 4.89485 4.91892 5.20674 5.25162 5.38667 5.45517 5.56224 5.61305 5.78396 5.79023 5.81312 5.93309 6.01018 6.04769 6.16244 6.17667 6.28499 6.31656 6.53781 6.55145 6.60942 6.63036 6.66094 6.84892 7.32828 7.60901 7.90353 7.97832 8.27977 8.88302 9.66528 10.03604 11.15933 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.002540 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.991208 B =11022.655335 C =11387.683226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 H 0.079 0.921 4 C 0.136 3.864 5 N -0.606 5.606 6 C -0.260 4.260 7 H 0.087 0.913 8 C 0.024 3.976 9 N -0.907 5.907 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.269 1.269 14 C 0.151 3.849 15 C -0.143 4.143 16 C 0.157 3.843 17 H 0.088 0.912 18 N -0.713 5.713 19 C 0.583 3.417 20 O -0.519 6.519 21 C -0.212 4.212 22 C -0.077 4.077 23 C -0.060 4.060 24 C -0.245 4.245 25 C 0.597 3.403 26 N -0.848 5.848 27 O -0.527 6.527 28 S 0.185 5.815 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.263 0.737 35 H 0.026 0.974 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.394 0.606 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.401 0.599 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.200 5.468 20.427 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 H 0.097 0.903 4 C 0.009 3.991 5 N -0.329 5.329 6 C -0.389 4.389 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.550 5.550 10 Si 0.710 3.290 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.194 1.194 14 C 0.024 3.976 15 C -0.183 4.183 16 C 0.054 3.946 17 H 0.106 0.894 18 N -0.363 5.363 19 C 0.367 3.633 20 O -0.396 6.396 21 C -0.334 4.334 22 C -0.109 4.109 23 C -0.094 4.094 24 C -0.367 4.367 25 C 0.381 3.619 26 N -0.412 5.412 27 O -0.404 6.404 28 S 0.453 5.547 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.228 0.772 40 H 0.180 0.820 41 H 0.178 0.822 42 H 0.230 0.770 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -11.077 5.580 19.891 23.441 hybrid contribution -0.959 -0.747 0.319 1.256 sum -12.036 4.833 20.210 24.014 Atomic orbital electron populations 1.21811 0.95515 1.01823 1.01262 1.22006 0.94911 1.01104 0.95669 0.90258 1.21378 0.84957 0.97300 0.95451 1.44406 1.00602 1.70018 1.17879 1.18924 0.98584 1.36212 0.85134 0.89584 1.25287 0.98001 0.98587 0.95650 1.69834 1.43235 1.37755 1.04161 0.87000 0.82536 0.82546 0.76927 1.21562 1.23077 1.19443 1.20900 0.97449 0.94181 0.85047 1.22416 0.94185 1.02002 0.99723 1.21131 0.94281 0.97225 0.82000 0.89427 1.46172 1.65690 1.14110 1.10343 1.17047 0.78284 0.86230 0.81747 1.90846 1.49716 1.15062 1.84024 1.25090 1.11181 0.97591 0.99575 1.20626 0.98082 1.02201 0.90018 1.20614 0.96632 0.90627 1.01511 1.24762 1.14283 0.99437 0.98218 1.17032 0.76915 0.81766 0.86191 1.43685 1.69329 1.12071 1.16163 1.90879 1.51267 1.81990 1.16268 1.83911 1.58499 1.07674 1.04623 0.92746 0.92269 0.93278 0.95394 0.90399 0.92726 0.95576 0.91423 0.92024 0.91676 0.77176 0.82007 0.82203 0.77050 0.75712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.03 37.16 0.34 -1.59 16 2 C -0.12 -1.84 2.46 -90.50 -0.22 -2.07 16 3 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 4 C 0.14 2.79 3.49 -3.71 -0.01 2.77 16 5 N -0.61 -13.82 2.77 -172.32 -0.48 -14.30 16 6 C -0.26 -7.05 10.03 -15.06 -0.15 -7.20 16 7 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 8 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 9 N -0.91 -27.17 13.97 55.49 0.78 -26.39 16 10 Si 0.88 21.77 24.35 -169.99 -4.14 17.63 16 11 H -0.29 -6.78 6.62 56.52 0.37 -6.40 16 12 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 13 H -0.27 -6.59 6.64 56.52 0.38 -6.22 16 14 C 0.15 2.91 6.52 -3.72 -0.02 2.88 16 15 C -0.14 -2.32 5.65 -26.61 -0.15 -2.47 16 16 C 0.16 2.37 1.88 -67.88 -0.13 2.24 16 17 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 18 N -0.71 -8.75 4.36 -54.92 -0.24 -8.99 16 19 C 0.58 7.62 7.77 -12.64 -0.10 7.52 16 20 O -0.52 -8.58 16.48 5.25 0.09 -8.49 16 21 C -0.21 -2.17 6.46 -36.54 -0.24 -2.41 16 22 C -0.08 -0.72 9.88 -40.69 -0.40 -1.12 16 23 C -0.06 -0.52 9.88 -40.69 -0.40 -0.92 16 24 C -0.25 -2.07 6.46 -36.55 -0.24 -2.31 16 25 C 0.60 5.29 8.07 -12.64 -0.10 5.19 16 26 N -0.85 -4.24 8.87 30.37 0.27 -3.97 16 27 O -0.53 -6.56 17.65 5.26 0.09 -6.47 16 28 S 0.18 1.33 21.40 -107.50 -2.30 -0.97 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 32 H 0.03 0.58 7.08 -51.93 -0.37 0.21 16 33 H 0.08 1.76 4.50 -51.93 -0.23 1.52 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.39 3.92 7.41 -40.82 -0.30 3.62 16 40 H 0.16 1.42 8.04 -52.48 -0.42 1.00 16 41 H 0.16 1.21 8.04 -52.49 -0.42 0.79 16 42 H 0.40 1.19 7.93 -40.82 -0.32 0.87 16 43 H 0.41 1.42 8.93 -40.82 -0.36 1.06 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -33.97 363.03 -8.15 -42.13 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.77 Total: 3.26 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.92 Total: 1.09 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.33 Total: -53.65 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.18 Total: -14.96 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.63 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.30 Total: -0.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.97 -8.15 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943496231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.641 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds