Wall clock time and date at job start Tue Mar 31 2020 20:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.52492 * 2 1 4 4 C 1.53188 * 109.49626 * 120.08442 * 2 1 3 5 5 N 1.46927 * 108.89428 * 174.65500 * 4 2 1 6 6 C 1.36933 * 120.63022 * 126.33925 * 5 4 2 7 7 H 1.08000 * 120.00191 * 331.82823 * 6 5 4 8 8 C 1.38816 * 120.00216 * 151.82741 * 6 5 4 9 9 N 1.31624 * 119.99356 * 343.07025 * 8 6 5 10 10 Si 1.86793 * 120.00395 * 163.07047 * 8 6 5 11 11 H 1.48493 * 109.47484 * 90.00085 * 10 8 6 12 12 H 1.48503 * 109.47169 * 210.00310 * 10 8 6 13 13 H 1.48506 * 109.47138 * 329.99723 * 10 8 6 14 14 C 1.46927 * 118.73625 * 306.32307 * 5 4 2 15 15 C 1.53183 * 108.78012 * 53.60636 * 14 5 4 16 16 C 1.53047 * 109.31066 * 305.36665 * 15 14 5 17 17 H 1.09000 * 109.45542 * 181.37267 * 16 15 14 18 18 N 1.46502 * 109.45670 * 301.34073 * 16 15 14 19 19 C 1.34772 * 120.00176 * 274.99996 * 18 16 15 20 20 O 1.21627 * 120.00234 * 0.02562 * 19 18 16 21 21 C 1.47172 * 120.00159 * 180.02562 * 19 18 16 22 22 C 1.36611 * 125.16499 * 179.72452 * 21 19 18 23 23 C 1.36800 * 114.74498 * 179.78475 * 22 21 19 24 24 C 1.36610 * 114.74150 * 0.50345 * 23 22 21 25 25 C 1.47169 * 125.15819 * 179.70842 * 24 23 22 26 26 N 1.34776 * 120.00114 * 179.97438 * 25 24 23 27 27 O 1.21630 * 119.99852 * 359.97438 * 25 24 23 28 28 S 1.75829 * 109.67987 * 359.72283 * 24 23 22 29 29 H 1.09003 * 109.47274 * 299.91782 * 1 2 3 30 30 H 1.09001 * 109.46916 * 59.91635 * 1 2 3 31 31 H 1.09000 * 109.47533 * 179.91479 * 1 2 3 32 32 H 1.09007 * 109.58820 * 54.79676 * 4 2 1 33 33 H 1.09000 * 109.58865 * 294.51392 * 4 2 1 34 34 H 0.96997 * 119.99488 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.58424 * 173.39841 * 14 5 4 36 36 H 1.08997 * 109.58254 * 293.81449 * 14 5 4 37 37 H 1.08998 * 109.49908 * 65.31471 * 15 14 5 38 38 H 1.08998 * 109.50222 * 185.38326 * 15 14 5 39 39 H 0.97005 * 119.99670 * 95.00532 * 18 16 15 40 40 H 1.08002 * 122.62243 * 359.97438 * 22 21 19 41 41 H 1.08000 * 122.62284 * 180.20830 * 23 22 21 42 42 H 0.96992 * 119.99720 * 0.02562 * 26 25 24 43 43 H 0.97006 * 119.99944 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5048 -0.8292 1.1730 6 6 4.2913 -0.3783 2.1992 7 1 3.9462 0.4274 2.8303 8 6 5.5322 -0.9568 2.4285 9 7 5.8194 -2.1284 1.9020 10 14 6.7943 -0.0725 3.4841 11 1 6.6217 -0.4743 4.9032 12 1 8.1609 -0.4348 3.0297 13 1 6.6038 1.3950 3.3585 14 6 4.1082 -1.4278 -0.0254 15 6 3.5766 -0.6975 -1.2626 16 6 2.0465 -0.7256 -1.2483 17 1 1.6659 -0.2277 -2.1402 18 7 1.5841 -2.1156 -1.2306 19 6 1.4573 -2.7985 -2.3855 20 8 1.7273 -2.2609 -3.4427 21 6 0.9923 -4.1947 -2.3677 22 6 0.8211 -4.9811 -3.4716 23 6 0.3833 -6.2501 -3.2083 24 6 0.1781 -6.5211 -1.8851 25 6 -0.2957 -7.8063 -1.3469 26 7 -0.4618 -7.9603 -0.0183 27 8 -0.5373 -8.7295 -2.1010 28 16 0.5657 -5.1015 -0.9229 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3634 -1.0276 -0.0015 32 1 1.6051 -1.7217 1.2979 33 1 1.7616 -0.1593 2.1390 34 1 6.6863 -2.5328 2.0626 35 1 5.1924 -1.3257 0.0215 36 1 3.8407 -2.4830 -0.0809 37 1 3.9215 0.3364 -1.2509 38 1 3.9417 -1.1926 -2.1623 39 1 1.3691 -2.5445 -0.3874 40 1 1.0190 -4.6294 -4.4734 41 1 0.2087 -6.9789 -3.9859 42 1 -0.2695 -7.2240 0.5831 43 1 -0.7745 -8.8073 0.3365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943496233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:20 Heat of formation + Delta-G solvation = -23.590366 kcal Electronic energy + Delta-G solvation = -27088.069948 eV Core-core repulsion = 23260.201557 eV Total energy + Delta-G solvation = -3827.868391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.09187 -39.76759 -38.04650 -36.93592 -34.35806 -34.08075 -32.69623 -31.27631 -30.58410 -29.62161 -26.33804 -25.80349 -25.06932 -22.53360 -22.00770 -21.48347 -21.12153 -19.49987 -18.95573 -18.67542 -17.31672 -16.87515 -16.74864 -15.92149 -15.42910 -15.22602 -15.02832 -14.84740 -14.67494 -14.15610 -13.94393 -13.84466 -13.43288 -13.32590 -13.11653 -12.72454 -12.60992 -12.49875 -12.19378 -11.57363 -11.44663 -11.36384 -11.15198 -10.90841 -10.74194 -10.59320 -10.43307 -10.30380 -10.14381 -10.12741 -9.96239 -9.82549 -9.51004 -9.15373 -8.91091 -8.73069 -8.52808 -6.75447 -5.86314 -3.29746 -0.12376 1.04390 1.42886 1.87603 2.83678 3.07770 3.16035 3.25738 3.32568 3.40592 3.42338 4.42711 4.52014 4.73327 4.94519 5.07405 5.10922 5.23165 5.28897 5.41493 5.51971 5.65842 5.74696 5.83732 5.89274 5.99413 6.00368 6.06297 6.18557 6.23051 6.35695 6.35883 6.53118 6.57850 6.65519 6.79987 6.85199 6.86443 7.28308 7.58653 7.60017 7.72870 7.80639 8.22807 8.36846 9.13019 9.76055 10.31915 11.21817 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.003362 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.671898 B = 8326.252930 C = 9312.283838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.085 0.915 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.256 4.256 7 H 0.065 0.935 8 C 0.005 3.995 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.287 1.287 12 H -0.289 1.289 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.156 4.156 16 C 0.160 3.840 17 H 0.077 0.923 18 N -0.702 5.702 19 C 0.584 3.416 20 O -0.528 6.528 21 C -0.211 4.211 22 C -0.080 4.080 23 C -0.062 4.062 24 C -0.250 4.250 25 C 0.598 3.402 26 N -0.848 5.848 27 O -0.530 6.530 28 S 0.197 5.803 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.011 0.989 33 H 0.058 0.942 34 H 0.254 0.746 35 H 0.087 0.913 36 H 0.017 0.983 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.399 0.601 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.402 0.598 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.473 -5.578 -4.799 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 H 0.103 0.897 4 C 0.024 3.976 5 N -0.313 5.313 6 C -0.386 4.386 7 H 0.083 0.917 8 C -0.194 4.194 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.205 1.205 14 C 0.048 3.952 15 C -0.196 4.196 16 C 0.057 3.943 17 H 0.095 0.905 18 N -0.353 5.353 19 C 0.368 3.632 20 O -0.407 6.407 21 C -0.333 4.333 22 C -0.113 4.113 23 C -0.095 4.095 24 C -0.372 4.372 25 C 0.382 3.618 26 N -0.412 5.412 27 O -0.408 6.408 28 S 0.466 5.534 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.035 0.965 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.235 0.765 40 H 0.178 0.822 41 H 0.176 0.824 42 H 0.231 0.769 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -13.228 -5.399 -4.512 14.983 hybrid contribution 0.708 -0.170 -0.019 0.729 sum -12.520 -5.569 -4.531 14.432 Atomic orbital electron populations 1.21770 0.95651 1.01292 1.01321 1.22025 0.94617 1.00884 0.96563 0.89683 1.20909 0.86205 0.95975 0.94474 1.44056 0.99065 1.71523 1.16638 1.19144 0.98688 1.12032 1.08700 0.91684 1.25036 0.99892 0.95314 0.99122 1.70025 1.22237 1.14450 1.47742 0.86322 0.81111 0.79471 0.79996 1.21391 1.21550 1.20458 1.20727 0.99400 0.92855 0.82218 1.22587 0.93898 1.02202 1.00883 1.21053 0.95324 0.79638 0.98314 0.90481 1.46033 1.66563 1.14762 1.07971 1.17011 0.77997 0.83535 0.84672 1.90802 1.50690 1.68675 1.30484 1.25095 1.11355 0.99562 0.97280 1.20574 0.98626 0.92072 1.00004 1.20568 0.97080 0.96724 0.95154 1.24772 1.14964 0.98937 0.98514 1.17035 0.76543 0.85725 0.82458 1.43687 1.71022 1.19338 1.07170 1.90864 1.50979 1.40954 1.57972 1.84108 1.59622 1.01992 1.07725 0.92539 0.93122 0.93219 0.97174 0.92317 0.93584 0.89480 0.96469 0.91477 0.92537 0.76535 0.82164 0.82372 0.76938 0.75809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.07 37.16 0.34 -1.41 16 2 C -0.12 -1.85 2.69 -90.34 -0.24 -2.09 16 3 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 4 C 0.15 2.80 5.49 -3.71 -0.02 2.77 16 5 N -0.59 -13.64 2.99 -172.32 -0.52 -14.16 16 6 C -0.26 -6.64 9.58 -15.06 -0.14 -6.79 16 7 H 0.07 1.66 7.88 -52.49 -0.41 1.24 16 8 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 9 N -0.90 -25.11 11.20 55.49 0.62 -24.49 16 10 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.17 3.93 5.04 -3.71 -0.02 3.92 16 15 C -0.16 -2.95 5.77 -26.61 -0.15 -3.10 16 16 C 0.16 2.61 2.23 -67.72 -0.15 2.46 16 17 H 0.08 1.26 7.57 -51.93 -0.39 0.86 16 18 N -0.70 -10.74 3.60 -54.76 -0.20 -10.93 16 19 C 0.58 9.15 7.77 -12.64 -0.10 9.05 16 20 O -0.53 -9.69 16.48 5.25 0.09 -9.60 16 21 C -0.21 -2.75 6.46 -36.54 -0.24 -2.99 16 22 C -0.08 -0.93 9.88 -40.69 -0.40 -1.34 16 23 C -0.06 -0.67 9.88 -40.69 -0.40 -1.07 16 24 C -0.25 -2.76 6.46 -36.55 -0.24 -2.99 16 25 C 0.60 6.69 8.08 -12.63 -0.10 6.59 16 26 N -0.85 -6.31 8.87 30.37 0.27 -6.04 16 27 O -0.53 -7.65 17.65 5.25 0.09 -7.56 16 28 S 0.20 2.08 21.40 -107.50 -2.30 -0.22 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.58 7.55 -51.93 -0.39 0.19 16 32 H 0.01 0.19 6.64 -51.93 -0.34 -0.16 16 33 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 34 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 36 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.40 5.81 5.84 -40.82 -0.24 5.57 16 40 H 0.16 1.72 8.04 -52.49 -0.42 1.30 16 41 H 0.16 1.51 8.04 -52.49 -0.42 1.09 16 42 H 0.40 2.32 7.93 -40.82 -0.32 2.00 16 43 H 0.41 2.32 8.93 -40.82 -0.36 1.96 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -32.00 365.58 -9.11 -41.11 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.69 Total: 7.40 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.96 Total: 3.06 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.18 Total: -55.62 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.18 Total: -17.16 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.30 Total: -0.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.00 -9.11 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943496233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.517 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds