Wall clock time and date at job start Tue Mar 31 2020 20:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.52492 * 2 1 4 4 C 1.53188 * 109.49626 * 120.08442 * 2 1 3 5 5 N 1.46927 * 108.89428 * 174.65500 * 4 2 1 6 6 C 1.36933 * 120.63022 * 126.33925 * 5 4 2 7 7 H 1.08000 * 120.00191 * 331.82823 * 6 5 4 8 8 C 1.38816 * 120.00216 * 151.82741 * 6 5 4 9 9 N 1.31624 * 119.99356 * 343.07025 * 8 6 5 10 10 Si 1.86793 * 120.00395 * 163.07047 * 8 6 5 11 11 H 1.48493 * 109.47484 * 90.00085 * 10 8 6 12 12 H 1.48503 * 109.47169 * 210.00310 * 10 8 6 13 13 H 1.48506 * 109.47138 * 329.99723 * 10 8 6 14 14 C 1.46927 * 118.73625 * 306.32307 * 5 4 2 15 15 C 1.53183 * 108.78012 * 53.60636 * 14 5 4 16 16 C 1.53047 * 109.31066 * 305.36665 * 15 14 5 17 17 H 1.09000 * 109.45542 * 181.37267 * 16 15 14 18 18 N 1.46502 * 109.45670 * 301.34073 * 16 15 14 19 19 C 1.34772 * 120.00176 * 274.99996 * 18 16 15 20 20 O 1.21627 * 120.00234 * 0.02562 * 19 18 16 21 21 C 1.47172 * 120.00159 * 180.02562 * 19 18 16 22 22 C 1.36611 * 125.16499 * 179.72452 * 21 19 18 23 23 C 1.36800 * 114.74498 * 179.78475 * 22 21 19 24 24 C 1.36610 * 114.74150 * 0.50345 * 23 22 21 25 25 C 1.47169 * 125.15819 * 179.70842 * 24 23 22 26 26 N 1.34776 * 120.00114 * 179.97438 * 25 24 23 27 27 O 1.21630 * 119.99852 * 359.97438 * 25 24 23 28 28 S 1.75829 * 109.67987 * 359.72283 * 24 23 22 29 29 H 1.09003 * 109.47274 * 299.91782 * 1 2 3 30 30 H 1.09001 * 109.46916 * 59.91635 * 1 2 3 31 31 H 1.09000 * 109.47533 * 179.91479 * 1 2 3 32 32 H 1.09007 * 109.58820 * 54.79676 * 4 2 1 33 33 H 1.09000 * 109.58865 * 294.51392 * 4 2 1 34 34 H 0.96997 * 119.99488 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.58424 * 173.39841 * 14 5 4 36 36 H 1.08997 * 109.58254 * 293.81449 * 14 5 4 37 37 H 1.08998 * 109.49908 * 65.31471 * 15 14 5 38 38 H 1.08998 * 109.50222 * 185.38326 * 15 14 5 39 39 H 0.97005 * 119.99670 * 95.00532 * 18 16 15 40 40 H 1.08002 * 122.62243 * 359.97438 * 22 21 19 41 41 H 1.08000 * 122.62284 * 180.20830 * 23 22 21 42 42 H 0.96992 * 119.99720 * 0.02562 * 26 25 24 43 43 H 0.97006 * 119.99944 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5048 -0.8292 1.1730 6 6 4.2913 -0.3783 2.1992 7 1 3.9462 0.4274 2.8303 8 6 5.5322 -0.9568 2.4285 9 7 5.8194 -2.1284 1.9020 10 14 6.7943 -0.0725 3.4841 11 1 6.6217 -0.4743 4.9032 12 1 8.1609 -0.4348 3.0297 13 1 6.6038 1.3950 3.3585 14 6 4.1082 -1.4278 -0.0254 15 6 3.5766 -0.6975 -1.2626 16 6 2.0465 -0.7256 -1.2483 17 1 1.6659 -0.2277 -2.1402 18 7 1.5841 -2.1156 -1.2306 19 6 1.4573 -2.7985 -2.3855 20 8 1.7273 -2.2609 -3.4427 21 6 0.9923 -4.1947 -2.3677 22 6 0.8211 -4.9811 -3.4716 23 6 0.3833 -6.2501 -3.2083 24 6 0.1781 -6.5211 -1.8851 25 6 -0.2957 -7.8063 -1.3469 26 7 -0.4618 -7.9603 -0.0183 27 8 -0.5373 -8.7295 -2.1010 28 16 0.5657 -5.1015 -0.9229 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3634 -1.0276 -0.0015 32 1 1.6051 -1.7217 1.2979 33 1 1.7616 -0.1593 2.1390 34 1 6.6863 -2.5328 2.0626 35 1 5.1924 -1.3257 0.0215 36 1 3.8407 -2.4830 -0.0809 37 1 3.9215 0.3364 -1.2509 38 1 3.9417 -1.1926 -2.1623 39 1 1.3691 -2.5445 -0.3874 40 1 1.0190 -4.6294 -4.4734 41 1 0.2087 -6.9789 -3.9859 42 1 -0.2695 -7.2240 0.5831 43 1 -0.7745 -8.8073 0.3365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943496233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:19 Heat of formation + Delta-G solvation = -45.869643 kcal Electronic energy + Delta-G solvation = -27089.036050 eV Core-core repulsion = 23260.201557 eV Total energy + Delta-G solvation = -3828.834493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35958 -40.69005 -39.36349 -37.99681 -36.01042 -34.89505 -34.08619 -32.89840 -32.08304 -30.78438 -27.49828 -27.37030 -26.45721 -23.97674 -23.05713 -22.82125 -22.46231 -20.51113 -20.07069 -19.94642 -18.66701 -18.07397 -17.89382 -16.90079 -16.81773 -16.54016 -16.33137 -16.02650 -15.87357 -15.61428 -15.45796 -15.07657 -14.75705 -14.65170 -14.40700 -14.10749 -13.68450 -13.55522 -13.40749 -13.14780 -12.94238 -12.70999 -12.52755 -12.37636 -12.27418 -12.20250 -11.96402 -11.67700 -11.54942 -11.50074 -11.23257 -11.09322 -10.90616 -10.51766 -10.24212 -9.94036 -9.75049 -8.65106 -7.85898 -5.30667 -1.07153 0.13743 0.51332 0.93324 1.47122 1.50463 1.58368 1.88397 2.00969 2.12262 2.31899 2.52409 3.30096 3.56147 3.69071 3.76550 3.82359 4.04142 4.06184 4.12425 4.23661 4.40418 4.58562 4.65138 4.76502 4.79205 4.81790 4.89274 4.99433 5.01788 5.08537 5.13577 5.16388 5.31496 5.42024 5.46614 5.54695 5.66498 5.70627 5.74295 6.14429 6.36823 6.40422 7.00849 7.05553 7.16315 7.87548 8.38544 9.19877 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.003362 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.671898 B = 8326.252930 C = 9312.283838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 H 0.082 0.918 4 C 0.148 3.852 5 N -0.606 5.606 6 C -0.260 4.260 7 H 0.069 0.931 8 C -0.046 4.046 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.284 1.284 12 H -0.298 1.298 13 H -0.272 1.272 14 C 0.187 3.813 15 C -0.145 4.145 16 C 0.166 3.834 17 H 0.084 0.916 18 N -0.699 5.699 19 C 0.585 3.415 20 O -0.560 6.560 21 C -0.245 4.245 22 C -0.069 4.069 23 C -0.066 4.066 24 C -0.251 4.251 25 C 0.597 3.403 26 N -0.828 5.828 27 O -0.566 6.566 28 S 0.240 5.760 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.061 0.939 34 H 0.248 0.752 35 H 0.047 0.953 36 H 0.001 0.999 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.402 0.598 40 H 0.166 0.834 41 H 0.171 0.829 42 H 0.412 0.588 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.272 -5.303 -4.131 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 H 0.100 0.900 4 C 0.023 3.977 5 N -0.329 5.329 6 C -0.390 4.390 7 H 0.086 0.914 8 C -0.242 4.242 9 N -0.578 5.578 10 Si 0.789 3.211 11 H -0.211 1.211 12 H -0.224 1.224 13 H -0.197 1.197 14 C 0.061 3.939 15 C -0.185 4.185 16 C 0.062 3.938 17 H 0.102 0.898 18 N -0.350 5.350 19 C 0.371 3.629 20 O -0.441 6.441 21 C -0.367 4.367 22 C -0.102 4.102 23 C -0.100 4.100 24 C -0.373 4.373 25 C 0.381 3.619 26 N -0.393 5.393 27 O -0.447 6.447 28 S 0.509 5.491 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.019 0.981 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.239 0.761 40 H 0.184 0.816 41 H 0.188 0.812 42 H 0.243 0.757 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -15.070 -5.104 -3.781 16.353 hybrid contribution 1.225 -0.298 -0.188 1.274 sum -13.845 -5.401 -3.969 15.382 Atomic orbital electron populations 1.21712 0.92636 1.02247 1.02678 1.21883 0.96945 0.99875 0.94116 0.90002 1.21097 0.83464 0.96945 0.96229 1.44249 1.01027 1.71501 1.16147 1.19477 0.99180 1.11673 1.08695 0.91356 1.25707 1.01661 0.95989 1.00847 1.70167 1.22167 1.15855 1.49571 0.85388 0.78485 0.78710 0.78515 1.21076 1.22425 1.19673 1.20408 0.97184 0.92461 0.83853 1.22417 0.96203 1.01337 0.98564 1.20937 0.93109 0.80563 0.99202 0.89783 1.45953 1.66420 1.14418 1.08213 1.17290 0.77176 0.84340 0.84086 1.90777 1.52166 1.69712 1.31434 1.24922 1.13735 0.98873 0.99143 1.20694 0.97401 0.92056 1.00055 1.20684 0.97092 0.96611 0.95590 1.24953 1.14212 0.99192 0.98919 1.17093 0.76362 0.85239 0.83246 1.43559 1.69393 1.20254 1.06078 1.90852 1.52836 1.41962 1.59041 1.83877 1.58531 1.00762 1.05915 0.91085 0.91917 0.92485 0.96138 0.92038 0.94299 0.93445 0.98114 0.91596 0.93214 0.76087 0.81640 0.81190 0.75723 0.74522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.07 71.98 0.65 -2.22 16 2 C -0.11 -3.09 2.69 -10.61 -0.03 -3.12 16 3 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.15 5.24 5.49 86.36 0.47 5.72 16 5 N -0.61 -27.93 2.99 -699.11 -2.09 -30.02 16 6 C -0.26 -13.46 9.58 84.04 0.81 -12.65 16 7 H 0.07 3.43 7.88 -2.91 -0.02 3.40 16 8 C -0.05 -2.49 4.92 84.86 0.42 -2.07 16 9 N -0.93 -53.18 11.20 21.65 0.24 -52.94 16 10 Si 0.96 43.45 29.59 68.60 2.03 45.48 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 C 0.19 8.64 5.04 86.36 0.44 9.07 16 15 C -0.15 -5.53 5.77 30.67 0.18 -5.35 16 16 C 0.17 5.22 2.23 45.12 0.10 5.32 16 17 H 0.08 2.60 7.57 -2.39 -0.02 2.59 16 18 N -0.70 -20.60 3.60 -445.42 -1.60 -22.20 16 19 C 0.58 17.91 7.77 86.59 0.67 18.58 16 20 O -0.56 -20.37 16.48 -4.12 -0.07 -20.44 16 21 C -0.24 -6.13 6.46 24.24 0.16 -5.98 16 22 C -0.07 -1.53 9.88 21.55 0.21 -1.31 16 23 C -0.07 -1.35 9.88 21.55 0.21 -1.14 16 24 C -0.25 -5.11 6.46 24.24 0.16 -4.95 16 25 C 0.60 12.36 8.08 86.59 0.70 13.06 16 26 N -0.83 -10.54 8.87 -176.06 -1.56 -12.11 16 27 O -0.57 -15.75 17.65 -4.13 -0.07 -15.83 16 28 S 0.24 4.64 21.40 -56.49 -1.21 3.43 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.14 7.55 -2.39 -0.02 1.12 16 32 H 0.02 0.70 6.64 -2.38 -0.02 0.68 16 33 H 0.06 2.14 7.93 -2.39 -0.02 2.12 16 34 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.05 2.57 6.06 -2.39 -0.01 2.55 16 36 H 0.00 0.04 7.74 -2.39 -0.02 0.02 16 37 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.40 11.12 5.84 -92.70 -0.54 10.58 16 40 H 0.17 3.43 8.04 -2.91 -0.02 3.41 16 41 H 0.17 3.03 8.04 -2.91 -0.02 3.00 16 42 H 0.41 3.72 7.93 -92.71 -0.74 2.98 16 43 H 0.42 3.85 8.93 -92.70 -0.83 3.03 16 Total: -1.00 -69.57 365.58 -0.22 -69.78 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -1.03 Total: 21.89 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 5.14 Total: 12.96 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -5.02 Total: -117.27 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.14 Total: -36.27 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -1.21 Total: 3.43 kcal Total: -69.57 -0.22 -69.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943496233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.913 kcal (2) G-P(sol) polarization free energy of solvation -69.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds