Wall clock time and date at job start Tue Mar 31 2020 20:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.49622 * 2 1 4 4 C 1.53185 * 109.52757 * 239.91342 * 2 1 3 5 5 N 1.46930 * 108.77765 * 185.39676 * 4 2 1 6 6 C 1.36936 * 120.63266 * 233.61128 * 5 4 2 7 7 H 1.08001 * 119.99910 * 27.68042 * 6 5 4 8 8 C 1.38807 * 120.00306 * 207.67831 * 6 5 4 9 9 N 1.31625 * 119.99767 * 17.35734 * 8 6 5 10 10 Si 1.86794 * 120.00363 * 197.35990 * 8 6 5 11 11 H 1.48496 * 109.47436 * 89.99879 * 10 8 6 12 12 H 1.48501 * 109.47164 * 210.00211 * 10 8 6 13 13 H 1.48504 * 109.47013 * 329.99630 * 10 8 6 14 14 C 1.46926 * 118.73541 * 53.60354 * 5 4 2 15 15 C 1.53188 * 108.78005 * 306.39686 * 14 5 4 16 16 C 1.53033 * 109.31351 * 54.63549 * 15 14 5 17 17 H 1.09006 * 109.46268 * 178.61841 * 16 15 14 18 18 N 1.46497 * 109.45280 * 58.64659 * 16 15 14 19 19 C 1.34780 * 119.99558 * 84.93609 * 18 16 15 20 20 O 1.21623 * 120.00158 * 0.02562 * 19 18 16 21 21 C 1.47174 * 119.99583 * 180.02562 * 19 18 16 22 22 C 1.36617 * 125.15823 * 180.02562 * 21 19 18 23 23 C 1.36799 * 114.74290 * 179.97438 * 22 21 19 24 24 C 1.36613 * 114.74731 * 0.02562 * 23 22 21 25 25 C 1.47167 * 125.16377 * 179.97438 * 24 23 22 26 26 N 1.34778 * 119.99974 * 179.97438 * 25 24 23 27 27 O 1.21624 * 119.99675 * 0.02562 * 25 24 23 28 28 S 1.75838 * 125.16431 * 359.70035 * 21 19 18 29 29 H 1.08998 * 109.47517 * 300.00248 * 1 2 3 30 30 H 1.09004 * 109.47079 * 60.00797 * 1 2 3 31 31 H 1.09000 * 109.46981 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.58970 * 305.18541 * 4 2 1 33 33 H 1.09000 * 109.58848 * 65.61009 * 4 2 1 34 34 H 0.96994 * 120.00034 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.58384 * 186.60443 * 14 5 4 36 36 H 1.09006 * 109.58352 * 66.18838 * 14 5 4 37 37 H 1.09002 * 109.49439 * 294.68290 * 15 14 5 38 38 H 1.08999 * 109.50037 * 174.58965 * 15 14 5 39 39 H 0.96996 * 120.00650 * 264.94442 * 18 16 15 40 40 H 1.08001 * 122.62760 * 359.95343 * 22 21 19 41 41 H 1.07995 * 122.62559 * 180.02562 * 23 22 21 42 42 H 0.96996 * 120.00304 * 0.02562 * 26 25 24 43 43 H 0.97005 * 119.99353 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0420 -0.7238 -1.2492 5 7 3.5054 -0.8284 -1.1688 6 6 4.2945 -0.3779 -2.1933 7 1 3.9474 0.4218 -2.8308 8 6 5.5405 -0.9490 -2.4124 9 7 5.8299 -2.1196 -1.8846 10 14 6.8065 -0.0565 -3.4563 11 1 7.6358 0.8180 -2.5887 12 1 7.6775 -1.0496 -4.1349 13 1 6.1129 0.7716 -4.4753 14 6 4.1060 -1.4253 0.0319 15 6 3.5708 -0.6937 1.2668 16 6 2.0408 -0.7226 1.2487 17 1 1.6576 -0.2240 2.1391 18 7 1.5793 -2.1128 1.2311 19 6 1.4512 -2.7950 2.3864 20 8 1.7183 -2.2562 3.4436 21 6 0.9880 -4.1918 2.3687 22 6 0.8204 -4.9791 3.4725 23 6 0.3787 -6.2470 3.2098 24 6 0.1777 -6.5198 1.8864 25 6 -0.2925 -7.8062 1.3481 26 7 -0.4556 -7.9615 0.0193 27 8 -0.5348 -8.7289 2.1025 28 16 0.5588 -5.0982 0.9243 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6065 -1.7218 -1.2977 33 1 1.7645 -0.1582 -2.1387 34 1 6.7007 -2.5185 -2.0374 35 1 5.1902 -1.3227 -0.0123 36 1 3.8388 -2.4806 0.0880 37 1 3.9153 0.3403 1.2548 38 1 3.9333 -1.1880 2.1681 39 1 1.3659 -2.5425 0.3880 40 1 1.0210 -4.6282 4.4740 41 1 0.2028 -6.9751 3.9877 42 1 -0.2628 -7.2255 -0.5823 43 1 -0.7660 -8.8094 -0.3354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943496234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:21 Heat of formation + Delta-G solvation = -45.744845 kcal Electronic energy + Delta-G solvation = -27091.761734 eV Core-core repulsion = 23262.932652 eV Total energy + Delta-G solvation = -3828.829081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36883 -40.69127 -39.37353 -37.99716 -36.01889 -34.89487 -34.08681 -32.89564 -32.08834 -30.78526 -27.49575 -27.37559 -26.45946 -23.98075 -23.05874 -22.82178 -22.46414 -20.51165 -20.06962 -19.94679 -18.66779 -18.07384 -17.89471 -16.90311 -16.82175 -16.54079 -16.33469 -16.02772 -15.87368 -15.61499 -15.45507 -15.07732 -14.76002 -14.65268 -14.40862 -14.10860 -13.68503 -13.55277 -13.40802 -13.14657 -12.96954 -12.69755 -12.54595 -12.38903 -12.27664 -12.16349 -11.95362 -11.67741 -11.54947 -11.49946 -11.23253 -11.09963 -10.90589 -10.52204 -10.24201 -9.94016 -9.75002 -8.66290 -7.85790 -5.30405 -1.07189 0.13747 0.51292 0.93316 1.47618 1.50558 1.57548 1.88351 2.00972 2.12265 2.31929 2.52305 3.29651 3.56212 3.68913 3.76929 3.82965 4.04110 4.05798 4.12158 4.23653 4.40389 4.58646 4.65153 4.76380 4.79208 4.81807 4.89297 4.99400 5.01705 5.08432 5.13571 5.16331 5.31515 5.41941 5.46668 5.54720 5.66392 5.70656 5.74328 6.14471 6.36802 6.40092 7.00850 7.05580 7.16087 7.87414 8.38154 9.19852 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.003360 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.998871 B = 8330.883210 C = 9312.065839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 H 0.082 0.918 4 C 0.148 3.852 5 N -0.606 5.606 6 C -0.259 4.259 7 H 0.070 0.930 8 C -0.047 4.047 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.291 1.291 12 H -0.298 1.298 13 H -0.267 1.267 14 C 0.186 3.814 15 C -0.145 4.145 16 C 0.166 3.834 17 H 0.084 0.916 18 N -0.699 5.699 19 C 0.585 3.415 20 O -0.560 6.560 21 C -0.245 4.245 22 C -0.069 4.069 23 C -0.066 4.066 24 C -0.251 4.251 25 C 0.597 3.403 26 N -0.828 5.828 27 O -0.566 6.566 28 S 0.240 5.760 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.062 0.938 34 H 0.248 0.752 35 H 0.047 0.953 36 H 0.001 0.999 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.402 0.598 40 H 0.166 0.834 41 H 0.171 0.829 42 H 0.412 0.588 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.366 -5.326 4.049 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 H 0.100 0.900 4 C 0.023 3.977 5 N -0.329 5.329 6 C -0.389 4.389 7 H 0.087 0.913 8 C -0.242 4.242 9 N -0.578 5.578 10 Si 0.789 3.211 11 H -0.218 1.218 12 H -0.225 1.225 13 H -0.191 1.191 14 C 0.060 3.940 15 C -0.185 4.185 16 C 0.062 3.938 17 H 0.102 0.898 18 N -0.350 5.350 19 C 0.371 3.629 20 O -0.441 6.441 21 C -0.367 4.367 22 C -0.102 4.102 23 C -0.100 4.100 24 C -0.373 4.373 25 C 0.381 3.619 26 N -0.393 5.393 27 O -0.447 6.447 28 S 0.509 5.491 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.019 0.981 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.239 0.761 40 H 0.184 0.816 41 H 0.188 0.812 42 H 0.243 0.757 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -15.181 -5.127 3.686 16.441 hybrid contribution 1.252 -0.280 0.226 1.303 sum -13.929 -5.407 3.912 15.445 Atomic orbital electron populations 1.21718 0.92657 1.02246 1.02673 1.21834 0.96970 0.99917 0.94130 0.89984 1.21099 0.83427 0.96955 0.96225 1.44263 1.01044 1.71532 1.16096 1.19501 0.98740 1.12052 1.08631 0.91279 1.25691 1.01612 0.96004 1.00923 1.70169 1.21803 1.15993 1.49808 0.85370 0.79395 0.77681 0.78619 1.21772 1.22468 1.19140 1.20418 0.97237 0.92471 0.83830 1.22421 0.96231 1.01322 0.98568 1.20879 0.93119 0.80582 0.99207 0.89773 1.45954 1.66463 1.14396 1.08195 1.17292 0.77159 0.84351 0.84089 1.90776 1.52198 1.69670 1.31439 1.24925 1.13724 0.98867 0.99163 1.20694 0.97385 0.92081 1.00051 1.20682 0.97092 0.96616 0.95587 1.24955 1.14266 0.99144 0.98908 1.17091 0.76346 0.85250 0.83251 1.43560 1.69474 1.20203 1.06052 1.90851 1.52768 1.42037 1.59032 1.83873 1.58644 1.00597 1.05950 0.91933 0.91089 0.92485 0.96090 0.91990 0.94306 0.93406 0.98100 0.91615 0.93235 0.76083 0.81648 0.81196 0.75719 0.74523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.06 71.98 0.65 -2.22 16 2 C -0.11 -3.10 2.67 -10.72 -0.03 -3.12 16 3 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 4 C 0.15 5.24 5.50 86.36 0.48 5.71 16 5 N -0.61 -27.89 3.00 -699.10 -2.09 -29.99 16 6 C -0.26 -13.39 9.58 84.03 0.81 -12.58 16 7 H 0.07 3.47 7.89 -2.91 -0.02 3.44 16 8 C -0.05 -2.50 4.91 84.86 0.42 -2.08 16 9 N -0.93 -53.21 11.19 21.65 0.24 -52.97 16 10 Si 0.96 43.50 29.59 68.60 2.03 45.53 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 13 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 14 C 0.19 8.62 5.05 86.36 0.44 9.05 16 15 C -0.15 -5.54 5.77 30.67 0.18 -5.36 16 16 C 0.17 5.22 2.21 45.02 0.10 5.32 16 17 H 0.08 2.61 7.58 -2.38 -0.02 2.59 16 18 N -0.70 -20.57 3.59 -445.92 -1.60 -22.18 16 19 C 0.58 17.90 7.77 86.59 0.67 18.57 16 20 O -0.56 -20.37 16.48 -4.10 -0.07 -20.44 16 21 C -0.24 -6.13 6.46 24.24 0.16 -5.97 16 22 C -0.07 -1.53 9.88 21.55 0.21 -1.32 16 23 C -0.07 -1.35 9.88 21.55 0.21 -1.14 16 24 C -0.25 -5.10 6.46 24.24 0.16 -4.95 16 25 C 0.60 12.35 8.07 86.59 0.70 13.05 16 26 N -0.83 -10.53 8.87 -176.07 -1.56 -12.09 16 27 O -0.57 -15.75 17.65 -4.11 -0.07 -15.82 16 28 S 0.24 4.63 21.40 -56.49 -1.21 3.42 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.14 7.54 -2.39 -0.02 1.12 16 32 H 0.02 0.71 6.64 -2.39 -0.02 0.70 16 33 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 34 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.05 2.59 6.04 -2.39 -0.01 2.58 16 36 H 0.00 0.05 7.74 -2.38 -0.02 0.03 16 37 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.40 11.10 5.83 -92.71 -0.54 10.56 16 40 H 0.17 3.43 8.04 -2.91 -0.02 3.41 16 41 H 0.17 3.02 8.04 -2.91 -0.02 3.00 16 42 H 0.41 3.70 7.93 -92.71 -0.74 2.97 16 43 H 0.42 3.85 8.93 -92.70 -0.83 3.02 16 Total: -1.00 -69.56 365.50 -0.21 -69.77 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -1.02 Total: 21.79 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 5.14 Total: 12.96 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -5.02 Total: -117.22 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.14 Total: -36.26 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -1.21 Total: 3.42 kcal Total: -69.56 -0.21 -69.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943496234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.029 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds