Wall clock time and date at job start Tue Mar 31 2020 20:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.49923 * 2 1 4 4 C 1.53189 * 109.49950 * 239.93597 * 2 1 3 5 5 N 1.46929 * 108.77894 * 185.38136 * 4 2 1 6 6 C 1.36936 * 120.63137 * 233.58774 * 5 4 2 7 7 H 1.07998 * 119.99901 * 27.69386 * 6 5 4 8 8 C 1.38808 * 119.99799 * 207.68682 * 6 5 4 9 9 N 1.31615 * 119.99919 * 17.37347 * 8 6 5 10 10 Si 1.86803 * 119.99890 * 197.36546 * 8 6 5 11 11 H 1.48503 * 109.47142 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46750 * 120.00271 * 10 8 6 13 13 H 1.48496 * 109.47304 * 240.00264 * 10 8 6 14 14 C 1.46929 * 118.73367 * 53.60804 * 5 4 2 15 15 C 1.53185 * 108.77590 * 306.39079 * 14 5 4 16 16 C 1.53040 * 109.52234 * 120.08263 * 2 1 3 17 17 H 1.09003 * 109.45947 * 301.35093 * 16 2 1 18 18 N 1.46501 * 109.46277 * 61.32900 * 16 2 1 19 19 C 1.34774 * 120.00032 * 205.00160 * 18 16 2 20 20 O 1.21684 * 119.99959 * 359.97438 * 19 18 16 21 21 C 1.46730 * 119.99929 * 179.97438 * 19 18 16 22 22 C 1.34880 * 125.05802 * 179.71881 * 21 19 18 23 23 C 1.38934 * 113.65360 * 179.80223 * 22 21 19 24 24 C 1.47336 * 122.95786 * 180.19726 * 23 22 21 25 25 N 1.34776 * 119.99969 * 180.28495 * 24 23 22 26 26 O 1.21620 * 120.00067 * 0.29334 * 24 23 22 27 27 C 1.36654 * 114.07947 * 0.48525 * 23 22 21 28 28 S 1.70597 * 110.53110 * 359.73705 * 27 23 22 29 29 H 1.09003 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47571 * 300.06353 * 1 2 3 31 31 H 1.08997 * 109.47245 * 60.06590 * 1 2 3 32 32 H 1.09000 * 109.58654 * 65.59387 * 4 2 1 33 33 H 1.09003 * 109.59112 * 305.17235 * 4 2 1 34 34 H 0.97007 * 119.99487 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.58814 * 66.18105 * 14 5 4 36 36 H 1.09006 * 109.58020 * 186.60828 * 14 5 4 37 37 H 1.09004 * 109.49840 * 174.58962 * 15 14 5 38 38 H 1.08995 * 109.50335 * 294.68586 * 15 14 5 39 39 H 0.96997 * 119.99939 * 24.99137 * 18 16 2 40 40 H 1.07999 * 123.16755 * 359.96453 * 22 21 19 41 41 H 0.97003 * 120.00149 * 0.02562 * 25 24 23 42 42 H 0.97000 * 120.00135 * 180.02562 * 25 24 23 43 43 H 1.07999 * 124.73369 * 179.75444 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5047 -0.8281 -1.1702 6 6 4.2932 -0.3778 -2.1952 7 1 3.9458 0.4220 -2.8324 8 6 5.5389 -0.9492 -2.4151 9 7 5.8283 -2.1198 -1.8877 10 14 6.8046 -0.0567 -3.4597 11 1 6.2369 1.2317 -3.9319 12 1 8.0198 0.2062 -2.6478 13 1 7.1633 -0.8984 -4.6294 14 6 4.1059 -1.4255 0.0300 15 6 3.5715 -0.6942 1.2654 16 6 2.0414 -0.7230 1.2481 17 1 1.6588 -0.2247 2.1389 18 7 1.5799 -2.1133 1.2304 19 6 1.4523 -2.7958 2.3855 20 8 1.7210 -2.2574 3.4432 21 6 0.9896 -4.1881 2.3678 22 6 0.8308 -4.9657 3.4584 23 6 0.3758 -6.2461 3.1686 24 6 0.1277 -7.2625 4.2059 25 7 -0.3084 -8.4891 3.8570 26 8 0.3162 -6.9946 5.3772 27 6 0.1847 -6.4816 1.8361 28 16 0.5672 -5.0928 0.9222 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8905 32 1 1.7633 -0.1576 -2.1389 33 1 1.6057 -1.7214 -1.2983 34 1 6.6988 -2.5193 -2.0417 35 1 3.8386 -2.4808 0.0859 36 1 5.1902 -1.3229 -0.0148 37 1 3.9345 -1.1888 2.1664 38 1 3.9160 0.3398 1.2535 39 1 1.3660 -2.5426 0.3873 40 1 1.0353 -4.6243 4.4623 41 1 -0.4585 -8.7029 2.9228 42 1 -0.4721 -9.1581 4.5399 43 1 -0.1607 -7.4164 1.4198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000945183783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:27 Heat of formation + Delta-G solvation = -25.022037 kcal Electronic energy + Delta-G solvation = -27054.328267 eV Core-core repulsion = 23226.397794 eV Total energy + Delta-G solvation = -3827.930473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.24814 -39.77183 -37.90039 -36.77089 -34.30907 -34.04508 -32.63091 -31.22889 -30.54424 -29.51646 -26.06539 -25.75040 -25.27097 -23.49039 -21.95446 -21.16490 -20.61356 -19.36154 -18.98718 -18.54536 -17.36018 -17.23592 -16.72691 -15.72891 -15.46671 -15.19395 -14.92686 -14.77132 -14.48592 -14.08418 -13.82705 -13.73369 -13.37389 -13.32386 -13.07715 -12.88255 -12.72615 -12.55033 -12.14839 -11.53610 -11.44148 -11.40040 -11.11861 -10.86318 -10.73908 -10.37129 -10.33659 -10.25125 -10.09797 -10.04085 -9.86385 -9.78331 -9.46504 -9.21754 -8.88943 -8.66076 -8.49981 -6.73031 -5.83437 -3.26300 0.16425 1.14883 1.51095 1.53820 3.00946 3.13245 3.34307 3.34846 3.42819 3.43727 3.44465 4.45071 4.47854 4.70662 4.87079 4.94904 5.14200 5.26790 5.32764 5.45320 5.51445 5.56548 5.77114 5.88388 5.94259 5.99036 6.03988 6.11378 6.23225 6.29066 6.40576 6.43873 6.58957 6.62219 6.71042 6.84299 6.92097 6.97574 7.32821 7.63060 7.69570 7.75964 7.94755 8.34413 8.39445 9.15872 9.79149 10.34875 11.24532 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.003049 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.364887 B = 9179.707541 C = 9847.077053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.084 0.916 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.900 5.900 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.174 3.826 15 C -0.156 4.156 16 C 0.161 3.839 17 H 0.077 0.923 18 N -0.705 5.705 19 C 0.587 3.413 20 O -0.531 6.531 21 C -0.260 4.260 22 C -0.019 4.019 23 C -0.165 4.165 24 C 0.584 3.416 25 N -0.851 5.851 26 O -0.535 6.535 27 C -0.211 4.211 28 S 0.264 5.736 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.011 0.989 34 H 0.253 0.747 35 H 0.017 0.983 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.398 0.602 40 H 0.163 0.837 41 H 0.400 0.600 42 H 0.406 0.594 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.905 -9.636 4.631 18.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 H 0.103 0.897 4 C 0.025 3.975 5 N -0.313 5.313 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.544 5.544 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.048 3.952 15 C -0.196 4.196 16 C 0.057 3.943 17 H 0.095 0.905 18 N -0.356 5.356 19 C 0.372 3.628 20 O -0.409 6.409 21 C -0.380 4.380 22 C -0.050 4.050 23 C -0.183 4.183 24 C 0.368 3.632 25 N -0.415 5.415 26 O -0.413 6.413 27 C -0.351 4.351 28 S 0.532 5.468 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.029 0.971 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.234 0.766 40 H 0.181 0.819 41 H 0.228 0.772 42 H 0.237 0.763 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.376 -8.600 4.455 17.334 hybrid contribution 0.518 -0.847 0.311 1.041 sum -13.858 -9.447 4.766 17.435 Atomic orbital electron populations 1.21775 0.95704 1.01298 1.01264 1.21969 0.94617 1.00883 0.96604 0.89742 1.20912 0.86175 0.95995 0.94458 1.44083 0.99097 1.71555 1.16607 1.19199 0.98227 1.12368 1.08531 0.91609 1.25025 0.99864 0.95371 0.99244 1.70042 1.21825 1.14614 1.47951 0.86250 0.81754 0.79252 0.79645 1.20265 1.21565 1.21769 1.20734 0.99406 0.92876 0.82192 1.22587 0.94014 1.02126 1.00864 1.20967 0.95284 0.79795 0.98224 0.90532 1.46002 1.66973 1.14684 1.07929 1.16881 0.77772 0.83579 0.84590 1.90818 1.50819 1.68799 1.30494 1.24371 1.15734 1.00268 0.97666 1.20295 0.93824 0.90401 1.00462 1.18999 1.10381 0.96288 0.92647 1.17627 0.75967 0.81845 0.87719 1.43663 1.70966 1.14273 1.12606 1.90860 1.51587 1.79869 1.18945 1.26105 1.05906 1.05439 0.97642 1.83335 1.56472 1.00001 1.06951 0.93191 0.93138 0.92611 0.92333 0.97105 0.93677 0.96447 0.89466 0.92537 0.91552 0.76646 0.81910 0.77153 0.76325 0.80742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.06 37.16 0.34 -1.47 16 2 C -0.12 -1.90 2.67 -90.50 -0.24 -2.14 16 3 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 4 C 0.15 2.85 5.50 -3.71 -0.02 2.83 16 5 N -0.59 -13.85 3.00 -172.32 -0.52 -14.36 16 6 C -0.25 -6.64 9.59 -15.06 -0.14 -6.79 16 7 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 8 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 9 N -0.90 -25.32 11.19 55.49 0.62 -24.70 16 10 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.17 4.01 5.05 -3.71 -0.02 3.99 16 15 C -0.16 -3.05 5.77 -26.61 -0.15 -3.20 16 16 C 0.16 2.72 2.21 -67.89 -0.15 2.57 16 17 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 18 N -0.70 -11.18 3.59 -55.05 -0.20 -11.38 16 19 C 0.59 9.74 7.75 -12.83 -0.10 9.64 16 20 O -0.53 -10.45 16.45 5.20 0.09 -10.36 16 21 C -0.26 -3.58 6.37 -37.34 -0.24 -3.82 16 22 C -0.02 -0.26 9.47 -40.52 -0.38 -0.64 16 23 C -0.16 -1.82 5.82 -106.51 -0.62 -2.44 16 24 C 0.58 6.54 8.06 -12.56 -0.10 6.44 16 25 N -0.85 -5.28 8.84 30.41 0.27 -5.01 16 26 O -0.54 -8.29 17.53 5.26 0.09 -8.20 16 27 C -0.21 -1.72 10.41 30.16 0.31 -1.40 16 28 S 0.26 2.63 22.09 -107.50 -2.37 0.25 16 29 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 33 H 0.01 0.20 6.64 -51.93 -0.34 -0.14 16 34 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 36 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.40 5.93 5.81 -40.82 -0.24 5.70 16 40 H 0.16 2.43 7.95 -52.49 -0.42 2.02 16 41 H 0.40 1.24 7.29 -40.82 -0.30 0.94 16 42 H 0.41 1.98 8.93 -40.82 -0.36 1.62 16 43 H 0.18 0.69 6.99 -52.49 -0.37 0.32 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -33.64 363.56 -8.78 -42.42 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.60 Total: 6.15 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -1.61 Total: 3.57 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.18 Total: -55.45 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.18 Total: -18.57 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.37 Total: 0.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.64 -8.78 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945183783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.399 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds