Wall clock time and date at job start Tue Mar 31 2020 20:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.52146 * 2 1 4 4 C 1.53187 * 109.49874 * 239.91973 * 2 1 3 5 5 N 1.46930 * 108.77582 * 185.41182 * 4 2 1 6 6 C 1.36934 * 120.63186 * 233.63337 * 5 4 2 7 7 H 1.07996 * 120.00598 * 27.65913 * 6 5 4 8 8 C 1.38816 * 119.99980 * 207.66357 * 6 5 4 9 9 N 1.31624 * 120.00023 * 17.35929 * 8 6 5 10 10 Si 1.86800 * 120.00129 * 197.35520 * 8 6 5 11 11 H 1.48504 * 109.46582 * 60.00137 * 10 8 6 12 12 H 1.48499 * 109.47097 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47463 * 300.00335 * 10 8 6 14 14 C 1.46924 * 118.73950 * 53.60491 * 5 4 2 15 15 C 1.53199 * 108.77739 * 306.39391 * 14 5 4 16 16 C 1.53038 * 109.30741 * 54.63531 * 15 14 5 17 17 H 1.08996 * 109.46724 * 58.64113 * 16 15 14 18 18 N 1.46508 * 109.45917 * 178.61542 * 16 15 14 19 19 C 1.34767 * 119.99891 * 275.00017 * 18 16 15 20 20 O 1.21686 * 120.00343 * 359.97438 * 19 18 16 21 21 C 1.46732 * 119.99821 * 179.97438 * 19 18 16 22 22 C 1.34885 * 125.05586 * 179.71737 * 21 19 18 23 23 C 1.38935 * 113.65518 * 179.80234 * 22 21 19 24 24 C 1.47332 * 122.96444 * 180.21952 * 23 22 21 25 25 N 1.34769 * 120.00141 * 180.31134 * 24 23 22 26 26 O 1.21620 * 119.99506 * 0.31795 * 24 23 22 27 27 C 1.36660 * 114.07426 * 0.49110 * 23 22 21 28 28 S 1.70598 * 110.53295 * 359.73229 * 27 23 22 29 29 H 1.08998 * 109.47586 * 299.91769 * 1 2 3 30 30 H 1.09000 * 109.47410 * 59.92190 * 1 2 3 31 31 H 1.09001 * 109.46955 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.58853 * 65.62527 * 4 2 1 33 33 H 1.09004 * 109.70744 * 305.26539 * 4 2 1 34 34 H 0.96994 * 119.99880 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.59035 * 186.60778 * 14 5 4 36 36 H 1.09006 * 109.58693 * 66.18272 * 14 5 4 37 37 H 1.08997 * 109.49579 * 294.68217 * 15 14 5 38 38 H 1.08996 * 109.49933 * 174.58115 * 15 14 5 39 39 H 0.97008 * 119.99717 * 94.99527 * 18 16 15 40 40 H 1.07997 * 123.17149 * 0.02562 * 22 21 19 41 41 H 0.97000 * 120.00417 * 0.02562 * 25 24 23 42 42 H 0.97002 * 119.99890 * 179.97438 * 25 24 23 43 43 H 1.08004 * 124.73276 * 179.73437 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5046 -0.8290 -1.1695 6 6 4.2936 -0.3783 -2.1940 7 1 3.9466 0.4216 -2.8312 8 6 5.5395 -0.9497 -2.4136 9 7 5.8287 -2.1206 -1.8863 10 14 6.8056 -0.0571 -3.4574 11 1 7.1174 1.2574 -2.8407 12 1 8.0444 -0.8720 -3.5375 13 1 6.2617 0.1534 -4.8231 14 6 4.1053 -1.4265 0.0308 15 6 3.5708 -0.6948 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 1.6967 -1.7572 1.2351 18 7 1.5264 -0.0529 2.4453 19 6 1.3971 -0.7385 3.5983 20 8 1.7072 -1.9142 3.6452 21 6 0.8824 -0.0671 4.7973 22 6 0.7068 -0.6543 5.9989 23 6 0.2093 0.2041 6.9714 24 6 -0.0551 -0.2214 8.3570 25 7 -0.5443 0.6605 9.2510 26 8 0.1682 -1.3684 8.6938 27 6 -0.0188 1.4765 6.5280 28 16 0.3958 1.6190 4.8793 29 1 -0.3634 0.5125 0.8907 30 1 -0.3634 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7638 -0.1579 -2.1389 33 1 1.6055 -1.7216 -1.3006 34 1 6.6991 -2.5200 -2.0401 35 1 5.1896 -1.3243 -0.0136 36 1 3.8377 -2.4817 0.0868 37 1 3.9159 0.3390 1.2541 38 1 3.9334 -1.1895 2.1672 39 1 1.2789 0.8843 2.4079 40 1 0.9351 -1.6928 6.1881 41 1 -0.7227 1.5753 8.9822 42 1 -0.7187 0.3802 10.1631 43 1 -0.4073 2.2798 7.1365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000945183784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:29 Heat of formation + Delta-G solvation = -26.521445 kcal Electronic energy + Delta-G solvation = -26468.273284 eV Core-core repulsion = 22640.277792 eV Total energy + Delta-G solvation = -3827.995492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.34498 -39.76067 -37.88764 -36.91849 -34.58530 -34.16351 -32.74867 -31.25248 -30.57775 -29.48525 -26.12623 -25.85419 -25.17601 -23.41549 -21.87544 -21.01099 -20.55213 -19.72265 -19.34297 -18.68912 -17.46526 -17.31868 -16.68577 -15.97563 -15.74085 -15.32249 -14.92427 -14.73131 -14.68389 -13.99314 -13.83913 -13.62539 -13.51188 -13.33554 -13.03461 -13.01646 -12.76832 -12.63173 -12.11174 -11.64971 -11.51175 -11.32656 -11.07081 -10.82550 -10.66759 -10.46564 -10.38134 -10.26131 -10.14960 -10.08907 -9.96514 -9.80005 -9.52736 -9.36984 -9.06374 -8.75521 -8.42940 -6.69661 -5.78706 -3.21548 -0.00698 0.96123 1.33586 1.38227 2.88604 3.00107 3.22425 3.27623 3.38487 3.44563 3.45193 4.31355 4.48795 4.57396 4.72158 4.78855 5.10138 5.28266 5.36122 5.39106 5.47242 5.58498 5.65764 5.85109 5.88194 5.95052 6.07482 6.22107 6.23597 6.30362 6.33068 6.42370 6.58061 6.65502 6.76459 6.85893 6.87373 6.94294 7.36272 7.55307 7.68058 7.79021 7.83420 8.22542 8.44360 9.20329 9.83754 10.40172 11.29834 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023424 B = 0.002400 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.055093 B =11664.210327 C =11988.787432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.072 0.928 4 C 0.155 3.845 5 N -0.592 5.592 6 C -0.256 4.256 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.903 3.097 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.173 3.827 15 C -0.148 4.148 16 C 0.157 3.843 17 H 0.086 0.914 18 N -0.716 5.716 19 C 0.584 3.416 20 O -0.520 6.520 21 C -0.258 4.258 22 C -0.018 4.018 23 C -0.161 4.161 24 C 0.583 3.417 25 N -0.851 5.851 26 O -0.532 6.532 27 C -0.209 4.209 28 S 0.249 5.751 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.255 0.745 35 H 0.091 0.909 36 H 0.021 0.979 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.391 0.609 40 H 0.165 0.835 41 H 0.399 0.601 42 H 0.406 0.594 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.404 12.734 18.071 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.544 5.544 10 Si 0.732 3.268 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.047 3.953 15 C -0.189 4.189 16 C 0.055 3.945 17 H 0.104 0.896 18 N -0.366 5.366 19 C 0.368 3.632 20 O -0.397 6.397 21 C -0.378 4.378 22 C -0.049 4.049 23 C -0.180 4.180 24 C 0.367 3.633 25 N -0.415 5.415 26 O -0.409 6.409 27 C -0.348 4.348 28 S 0.517 5.483 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.224 0.776 40 H 0.183 0.817 41 H 0.228 0.772 42 H 0.238 0.762 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.828 12.180 16.996 25.633 hybrid contribution 0.388 0.260 0.972 1.078 sum -14.440 12.440 17.968 26.193 Atomic orbital electron populations 1.21783 0.95753 1.01719 1.00820 1.21985 0.94548 1.00629 0.96425 0.90998 1.20887 0.86018 0.96677 0.93652 1.44099 0.99263 1.71444 1.16653 1.19116 0.98241 1.12421 1.08737 0.91669 1.25055 0.99925 0.95342 0.99268 1.70026 1.22018 1.14508 1.47894 0.86372 0.81107 0.79099 0.80185 1.21068 1.21638 1.20880 1.20774 0.99510 0.93135 0.81886 1.22599 0.93635 1.01659 1.00978 1.21152 0.94731 0.96980 0.81669 0.89625 1.46198 1.65996 1.13819 1.10560 1.16921 0.78246 0.86283 0.81736 1.90873 1.49711 1.15122 1.84016 1.24409 1.15090 0.98573 0.99756 1.20357 0.93575 1.01783 0.89211 1.19039 1.09541 0.93559 0.95819 1.17617 0.76305 0.84931 0.84479 1.43660 1.68993 1.14414 1.14414 1.90877 1.51673 1.18655 1.79725 1.26068 1.05973 1.00779 1.02029 1.83068 1.55464 1.06759 1.03018 0.93591 0.92593 0.92760 0.92322 0.96096 0.93486 0.89130 0.96041 0.92565 0.92639 0.77554 0.81746 0.77195 0.76230 0.80703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.03 37.16 0.34 -1.49 16 2 C -0.11 -1.84 2.46 -90.50 -0.22 -2.06 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.15 3.11 5.80 -3.71 -0.02 3.09 16 5 N -0.59 -14.56 2.99 -172.31 -0.52 -15.08 16 6 C -0.26 -6.89 9.59 -15.06 -0.14 -7.03 16 7 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 8 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 10 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 C 0.17 4.18 5.31 -3.71 -0.02 4.16 16 15 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 16 C 0.16 2.68 1.88 -67.88 -0.13 2.56 16 17 H 0.09 1.65 7.57 -51.93 -0.39 1.26 16 18 N -0.72 -9.95 4.36 -55.06 -0.24 -10.19 16 19 C 0.58 8.88 7.75 -12.83 -0.10 8.78 16 20 O -0.52 -10.10 16.45 5.20 0.09 -10.01 16 21 C -0.26 -3.05 6.37 -37.34 -0.24 -3.29 16 22 C -0.02 -0.22 9.47 -40.51 -0.38 -0.61 16 23 C -0.16 -1.52 5.82 -106.51 -0.62 -2.14 16 24 C 0.58 5.77 8.06 -12.56 -0.10 5.67 16 25 N -0.85 -4.18 8.84 30.41 0.27 -3.91 16 26 O -0.53 -7.71 17.52 5.26 0.09 -7.62 16 27 C -0.21 -1.27 10.41 30.16 0.31 -0.95 16 28 S 0.25 1.77 22.09 -107.50 -2.37 -0.60 16 29 H 0.05 0.50 7.36 -51.93 -0.38 0.12 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.09 2.44 6.03 -51.93 -0.31 2.13 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.39 4.31 7.39 -40.82 -0.30 4.01 16 40 H 0.17 2.28 7.95 -52.49 -0.42 1.87 16 41 H 0.40 0.65 7.29 -40.82 -0.30 0.35 16 42 H 0.41 1.53 8.93 -40.82 -0.36 1.17 16 43 H 0.18 0.34 6.99 -52.48 -0.37 -0.03 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -35.08 367.49 -8.87 -43.96 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.76 Total: 3.40 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -1.56 Total: 3.61 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.13 Total: -54.75 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.18 Total: -17.63 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.37 Total: -0.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.08 -8.87 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945183784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.434 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds