Wall clock time and date at job start Tue Mar 31 2020 20:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.58744 * 2 1 4 4 C 1.53192 * 109.70445 * 120.35721 * 2 1 3 5 5 C 1.53040 * 109.31382 * 174.48746 * 4 2 1 6 6 H 1.09005 * 109.44280 * 58.65222 * 5 4 2 7 7 N 1.46502 * 109.46315 * 178.61232 * 5 4 2 8 8 C 1.34772 * 120.00421 * 205.07292 * 7 5 4 9 9 O 1.21626 * 120.00009 * 0.02562 * 8 7 5 10 10 C 1.47168 * 120.00268 * 179.97438 * 8 7 5 11 11 C 1.36615 * 125.16621 * 180.29482 * 10 8 7 12 12 C 1.36793 * 114.74486 * 180.19767 * 11 10 8 13 13 C 1.36613 * 114.74851 * 359.54833 * 12 11 10 14 14 C 1.47162 * 125.16270 * 180.22888 * 13 12 11 15 15 N 1.34783 * 120.00228 * 180.02562 * 14 13 12 16 16 O 1.21632 * 120.00198 * 359.97438 * 14 13 12 17 17 S 1.75838 * 109.67513 * 0.24447 * 13 12 11 18 18 C 1.53030 * 109.54177 * 298.63811 * 5 4 2 19 19 C 1.53196 * 109.31263 * 61.36390 * 18 5 4 20 20 N 1.46927 * 108.77303 * 305.36072 * 19 18 5 21 21 C 1.36936 * 120.63524 * 233.62951 * 20 19 18 22 22 H 1.07994 * 119.99950 * 150.16304 * 21 20 19 23 23 C 1.38811 * 119.99604 * 330.16137 * 21 20 19 24 24 N 1.31612 * 120.00527 * 344.48904 * 23 21 20 25 25 Si 1.86806 * 119.99703 * 164.49195 * 23 21 20 26 26 H 1.48498 * 109.47064 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47203 * 119.99975 * 25 23 21 28 28 H 1.48506 * 109.47170 * 240.00134 * 25 23 21 29 29 H 1.09007 * 109.47437 * 180.28562 * 1 2 3 30 30 H 1.09007 * 109.47187 * 300.27954 * 1 2 3 31 31 H 1.08998 * 109.47761 * 60.27999 * 1 2 3 32 32 H 1.09006 * 109.49534 * 54.54173 * 4 2 1 33 33 H 1.08995 * 109.49990 * 294.44477 * 4 2 1 34 34 H 0.97008 * 119.99733 * 25.06878 * 7 5 4 35 35 H 1.08002 * 122.62385 * 359.97438 * 11 10 8 36 36 H 1.08005 * 122.62531 * 179.81219 * 12 11 10 37 37 H 0.97003 * 119.99547 * 359.97438 * 15 14 13 38 38 H 0.97000 * 119.99844 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.49932 * 181.31595 * 18 5 4 40 40 H 1.09001 * 109.49640 * 301.40962 * 18 5 4 41 41 H 1.08991 * 109.58927 * 65.15495 * 19 18 5 42 42 H 1.09002 * 109.58430 * 185.58449 * 19 18 5 43 43 H 0.97006 * 120.00268 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 3.5705 -0.8445 1.1673 6 1 4.0068 0.1519 1.0963 7 7 4.0711 -1.5117 2.3717 8 6 5.3349 -1.2947 2.7864 9 8 6.0598 -0.5445 2.1611 10 6 5.8375 -1.9646 3.9966 11 6 7.0935 -1.8171 4.5134 12 6 7.3356 -2.5448 5.6462 13 6 6.2790 -3.2931 6.0819 14 6 6.2854 -4.1546 7.2751 15 7 5.1807 -4.8503 7.6100 16 8 7.2880 -4.2395 7.9585 17 16 4.9104 -3.0711 5.0006 18 6 3.9601 -1.6608 -0.0671 19 6 3.4653 -0.9424 -1.3264 20 7 2.0224 -0.6981 -1.1954 21 6 1.1532 -1.1133 -2.1686 22 1 0.1402 -1.3826 -1.9086 23 6 1.5742 -1.1880 -3.4892 24 7 2.6829 -0.5846 -3.8617 25 14 0.5668 -2.1449 -4.7379 26 1 -0.6259 -2.7260 -4.0709 27 1 0.1310 -1.2328 -5.8258 28 1 1.3949 -3.2370 -5.3095 29 1 -0.3634 -1.0277 0.0051 30 1 -0.3634 0.5182 0.8875 31 1 -0.3634 0.5094 -0.8924 32 1 1.6079 -1.7258 1.2904 33 1 1.7689 -0.1673 2.1364 34 1 3.4928 -2.1097 2.8707 35 1 7.8381 -1.1789 4.0609 36 1 8.2863 -2.5257 6.1585 37 1 4.3812 -4.7828 7.0647 38 1 5.1848 -5.4178 8.3966 39 1 5.0446 -1.7625 -0.1086 40 1 3.5036 -2.6489 -0.0087 41 1 3.9885 0.0076 -1.4346 42 1 3.6522 -1.5665 -2.2003 43 1 2.9773 -0.6371 -4.7845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947795394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:04 Heat of formation + Delta-G solvation = -23.246638 kcal Electronic energy + Delta-G solvation = -26298.389085 eV Core-core repulsion = 22470.535599 eV Total energy + Delta-G solvation = -3827.853486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.09405 -39.83850 -37.98905 -37.13597 -34.71848 -34.24986 -32.49901 -31.61069 -30.38882 -29.37993 -26.58809 -26.07443 -24.71646 -22.54438 -22.12307 -21.68015 -20.34882 -19.83425 -19.46099 -18.72694 -17.49525 -16.97292 -16.35936 -16.16228 -15.67152 -15.39635 -15.20281 -14.91830 -14.86302 -14.08916 -13.96880 -13.72672 -13.47586 -13.33982 -13.11034 -12.84375 -12.68736 -12.62665 -11.65182 -11.58895 -11.28287 -11.18061 -10.98251 -10.95675 -10.75424 -10.70433 -10.35757 -10.29428 -10.24999 -10.12774 -10.05602 -9.80076 -9.46018 -9.30660 -9.09545 -8.83925 -8.47029 -6.67415 -5.80318 -3.24861 -0.29737 0.85187 1.22943 1.72351 2.67707 2.90475 3.03222 3.07292 3.35036 3.42995 3.44481 4.34814 4.46234 4.57494 4.78350 4.95563 5.18699 5.30547 5.38351 5.50166 5.51526 5.64522 5.69486 5.85279 5.91673 6.09572 6.12990 6.19310 6.26506 6.30930 6.36739 6.43537 6.56667 6.69343 6.72812 6.77248 6.98263 7.05204 7.32320 7.45127 7.64401 7.64787 7.80264 8.09870 8.43972 9.19198 9.82622 10.39791 11.28441 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.002351 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.953466 B =11906.066089 C =12142.219286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.028 0.972 4 C -0.135 4.135 5 C 0.151 3.849 6 H 0.086 0.914 7 N -0.716 5.716 8 C 0.580 3.420 9 O -0.517 6.517 10 C -0.209 4.209 11 C -0.079 4.079 12 C -0.059 4.059 13 C -0.247 4.247 14 C 0.597 3.403 15 N -0.849 5.849 16 O -0.527 6.527 17 S 0.183 5.817 18 C -0.148 4.148 19 C 0.175 3.825 20 N -0.587 5.587 21 C -0.252 4.252 22 H 0.070 0.930 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.290 1.290 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.392 0.608 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.401 0.599 38 H 0.411 0.589 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.022 0.978 42 H 0.089 0.911 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.442 -6.411 21.244 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.048 3.952 6 H 0.104 0.896 7 N -0.366 5.366 8 C 0.364 3.636 9 O -0.394 6.394 10 C -0.331 4.331 11 C -0.111 4.111 12 C -0.093 4.093 13 C -0.369 4.369 14 C 0.381 3.619 15 N -0.413 5.413 16 O -0.405 6.405 17 S 0.450 5.550 18 C -0.188 4.188 19 C 0.049 3.951 20 N -0.311 5.311 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.216 1.216 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.225 0.775 35 H 0.180 0.820 36 H 0.178 0.822 37 H 0.229 0.771 38 H 0.242 0.758 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.107 0.893 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.201 -6.367 20.861 21.922 hybrid contribution 0.315 -0.505 -0.373 0.703 sum 2.516 -6.872 20.488 21.756 Atomic orbital electron populations 1.21789 0.95663 1.01402 1.00416 1.20352 0.93138 0.93595 0.86535 0.95473 1.22403 0.93357 1.01792 0.99914 1.21161 0.94479 0.96878 0.82687 0.89610 1.46268 1.12469 1.48309 1.29513 1.17065 0.82457 0.81422 0.82617 1.90857 1.56311 1.36514 1.55719 1.25138 0.99490 1.06167 1.02333 1.20637 0.95835 0.99635 0.94988 1.20613 0.99512 0.93874 0.95264 1.24737 0.99814 1.09234 1.03106 1.17038 0.83281 0.78642 0.82896 1.43681 1.14980 1.49822 1.32795 1.90879 1.32615 1.64672 1.52292 1.83858 1.13374 1.40376 1.17352 1.22595 0.99881 0.99635 0.96676 1.20739 0.83277 0.97342 0.93739 1.44176 1.02913 1.64934 1.19049 1.19188 0.95267 1.37638 0.86062 0.91199 1.25118 0.97899 0.99506 0.97040 1.70027 1.24205 1.43632 1.16652 0.86270 0.79596 0.79613 0.81548 1.20280 1.21745 1.21629 0.92781 0.94295 0.91767 0.91711 0.92558 0.77458 0.81974 0.82223 0.77068 0.75754 0.92745 0.92544 0.96027 0.89273 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.96 37.15 0.30 -2.08 16 2 C 0.17 3.34 3.49 -67.60 -0.24 3.10 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.12 4.85 -26.61 -0.13 -2.25 16 5 C 0.15 2.49 2.42 -67.89 -0.16 2.32 16 6 H 0.09 1.59 7.57 -51.93 -0.39 1.20 16 7 N -0.72 -9.59 5.07 -54.93 -0.28 -9.86 16 8 C 0.58 8.33 7.77 -12.64 -0.10 8.24 16 9 O -0.52 -9.39 16.48 5.25 0.09 -9.30 16 10 C -0.21 -2.33 6.46 -36.54 -0.24 -2.56 16 11 C -0.08 -0.80 9.88 -40.69 -0.40 -1.20 16 12 C -0.06 -0.54 9.88 -40.69 -0.40 -0.95 16 13 C -0.25 -2.21 6.46 -36.55 -0.24 -2.45 16 14 C 0.60 5.50 8.07 -12.63 -0.10 5.39 16 15 N -0.85 -4.43 8.87 30.37 0.27 -4.16 16 16 O -0.53 -6.74 17.65 5.25 0.09 -6.65 16 17 S 0.18 1.41 21.40 -107.50 -2.30 -0.89 16 18 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 19 C 0.18 4.10 5.28 -3.71 -0.02 4.09 16 20 N -0.59 -13.90 2.99 -164.78 -0.49 -14.39 16 21 C -0.25 -6.52 8.57 -15.06 -0.13 -6.65 16 22 H 0.07 1.76 6.24 -52.49 -0.33 1.43 16 23 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 24 N -0.90 -25.70 11.23 55.49 0.62 -25.08 16 25 Si 0.90 21.15 29.58 -169.99 -5.03 16.12 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H 0.05 0.95 7.43 -51.92 -0.39 0.56 16 30 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.06 1.24 7.63 -51.93 -0.40 0.84 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.39 4.15 7.71 -40.82 -0.31 3.84 16 35 H 0.16 1.57 8.04 -52.49 -0.42 1.15 16 36 H 0.16 1.30 8.04 -52.48 -0.42 0.87 16 37 H 0.40 1.27 7.93 -40.82 -0.32 0.94 16 38 H 0.41 1.49 8.93 -40.82 -0.36 1.13 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 2.35 6.15 -51.93 -0.32 2.03 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -32.99 367.24 -9.35 -42.34 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.76 Total: 4.29 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -2.09 Total: 2.04 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.12 Total: -53.49 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.18 Total: -15.95 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.30 Total: -0.89 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.99 -9.35 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947795394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.090 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds